Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN14G3690 Fragaria x ananassa HOM05D003238 ORTHO05D003571 3.5e-36 154.5 79 100.0
FvH4_6g33970 Fragaria vesca HOM05D003238 ORTHO05D003571 1.3e-35 152.5 79 98.7
FAN09G2388 Fragaria x ananassa HOM05D003238 ORTHO05D003571 1.3e-35 152.5 79 98.7
FAN05G5076 Fragaria x ananassa HOM05D003238 ORTHO05D003571 3.0e-35 151.4 79 97.5
RcHm_v2.0_Chr2g0144001 Rosa chinensis HOM05D003238 ORTHO05D003571 2.3e-27 125.2 79 82.3
Prupe.3G046400 Prunus persica HOM05D003238 ORTHO05D003571 1.1e-24 116.3 83 75.9
MD09G1190500 Malus domestica HOM05D003238 ORTHO05D003571 4.4e-23 110.9 72 80.6
MSTRG.4775 Avicennia marina HOM05D003238 ORTHO05D003571 4.8e-17 90.9 62 69.4
TAR624G0020 Trochodendron aralioides HOM05D003238 ORTHO05D003571 5.8e-15 84.0 64 64.1
SGA_v2.0_scaffold10G05235 Striga asiatica HOM05D002348 ORTHO05D002512 1.3e-14 82.8 78 61.5
CiPaw.02G138700 Carya illinoinensis HOM05D003238 ORTHO05D003571 2.2e-14 82.0 61 67.2
HPP92_006473 Vanilla planifolia HOM05D003238 ORTHO05D003571 1.4e-13 79.3 71 60.6
TAR362G1092 Trochodendron aralioides HOM05D003238 ORTHO05D003571 2.4e-13 78.6 62 62.9
THA.LOC104813494 Tarenaya hassleriana HOM05D003238 ORTHO05D003571 5.4e-13 77.4 78 57.7
TAR375G0996 Trochodendron aralioides HOM05D003238 ORTHO05D003571 9.3e-13 76.6 64 59.4
Lsat_1_v5_gn_1_35700 Lactuca sativa HOM05D003238 ORTHO05D003571 1.6e-12 75.9 66 65.2
MSTRG.6003 Avicennia marina HOM05D003238 ORTHO05D003571 2.1e-12 75.5 56 71.4
Oeu004201.1 Olea europaea HOM05D003238 ORTHO05D003571 2.1e-12 75.5 64 64.1
Potri.004G095300 Populus trichocarpa HOM05D003238 ORTHO05D003571 2.7e-12 75.1 61 63.9
Medtr2g039890 Medicago truncatula HOM05D003238 ORTHO05D003571 6.0e-12 73.9 67 61.2
BraA10t43522Z Brassica rapa HOM05D003238 ORTHO05D003571 7.9e-12 73.6 79 53.2
GSVIVG01015179001 Vitis vinifera HOM05D003238 ORTHO05D003571 7.9e-12 73.6 76 53.9
Psat1g140480 Pisum sativum HOM05D003238 ORTHO05D003571 1.0e-11 73.2 70 57.1
FAN23G0786 Fragaria x ananassa HOM05D003238 ORTHO05D003571 1.8e-11 72.4 64 59.4
SalBow7G1866 Salvia bowleyana HOM05D003238 ORTHO05D003571 1.8e-11 72.4 46 73.9
HanXRQChr02g0031751 Helianthus annuus HOM05D003238 ORTHO05D003571 2.3e-11 72.0 52 75.0
Os09g0363700 Oryza sativa ssp. japonica HOM05D003238 ORTHO05D003571 3.0e-11 71.6 69 58.0
RcHm_v2.0_Chr2g0093691 Rosa chinensis HOM05D003238 ORTHO05D003571 3.0e-11 71.6 65 58.5
Zm00001eb310990 Zea mays HOM05D003238 ORTHO05D003571 3.0e-11 71.6 54 68.5
Carub.0002s1954 Capsella rubella HOM05D003238 ORTHO05D003571 5.1e-11 70.9 54 61.1
FvH4_1g07820 Fragaria vesca HOM05D003238 ORTHO05D003571 5.1e-11 70.9 64 59.4
FAN19G2918 Fragaria x ananassa HOM05D003238 ORTHO05D003571 5.1e-11 70.9 64 59.4
FAN26G0800 Fragaria x ananassa HOM05D003238 ORTHO05D003571 5.1e-11 70.9 64 59.4
FAN28G2679 Fragaria x ananassa HOM05D003238 ORTHO05D003571 5.1e-11 70.9 64 59.4
TPR.G13426 Trifolium pratense HOM05D003238 ORTHO05D003571 5.1e-11 70.9 67 59.7
Migut.D00960 Erythranthe guttata HOM05D003238 ORTHO05D003571 6.7e-11 70.5 52 67.3
FAN26G1453 Fragaria x ananassa HOM05D003238 ORTHO05D003571 6.7e-11 70.5 64 59.4
Sed0010916 Sechium edule HOM05D003238 ORTHO05D003571 6.7e-11 70.5 61 59.0
A03p13050 Brassica napus HOM05D003238 ORTHO05D003571 8.7e-11 70.1 63 50.8
C09p48650 Brassica napus HOM05D003238 ORTHO05D003571 8.7e-11 70.1 69 59.4
BraA03t10615Z Brassica rapa HOM05D003238 ORTHO05D003571 8.7e-11 70.1 63 50.8
CANSAT56G2721 Cannabis sativa HOM05D003238 ORTHO05D003571 8.7e-11 70.1 55 67.3
Thhalv10014757m.g Eutrema salsugineum HOM05D003238 ORTHO05D003571 1.1e-10 69.7 66 56.1
PGR142G0437 Punica granatum HOM05D003238 ORTHO05D003571 1.1e-10 69.7 69 56.5
BcaB08g36028 Brassica carinata HOM05D003238 ORTHO05D003571 1.5e-10 69.3 66 59.1
BcaC04g20028 Brassica carinata HOM05D003238 ORTHO05D003571 1.5e-10 69.3 71 57.7
BolC9t57711H Brassica oleracea HOM05D003238 ORTHO05D003571 1.5e-10 69.3 71 57.7
SalBow6G6091 Salvia bowleyana HOM05D003238 ORTHO05D003571 1.5e-10 69.3 64 56.2
Ca_26161_v3 Cicer arietinum L. HOM05D003238 ORTHO05D003571 1.9e-10 68.9 66 56.1
Migut.J00580 Erythranthe guttata HOM05D003238 ORTHO05D003571 1.9e-10 68.9 50 68.0
RcHm_v2.0_Chr3g0459511 Rosa chinensis HOM05D003238 ORTHO05D003571 1.9e-10 68.9 58 60.3
TWI63G0468 Tripterygium wilfordii HOM05D003238 ORTHO05D003571 1.9e-10 68.9 62 62.9
Actinidia25242 Actinidia chinensis HOM05D003238 ORTHO05D003571 2.5e-10 68.6 64 56.2
HPP92_006471 Vanilla planifolia HOM05D003238 ORTHO05D003571 2.5e-10 68.6 52 69.2
ClCG05G000830 Citrullus lanatus HOM05D003238 ORTHO05D003571 3.3e-10 68.2 73 49.3
Glyma.15G170900 Glycine max HOM05D003238 ORTHO05D003571 3.3e-10 68.2 68 54.4
HanXRQChr04g0126171 Helianthus annuus HOM05D003238 ORTHO05D003571 3.3e-10 68.2 63 58.7
unitig_26.g9174 Utricularia gibba HOM05D003238 ORTHO05D003571 3.3e-10 68.2 60 60.0
Ciclev10009462m.g Citrus clementina HOM05D003238 ORTHO05D003571 4.3e-10 67.8 67 50.7
ECA236G3496 Erigeron canadensis HOM05D003238 ORTHO05D003571 4.3e-10 67.8 54 66.7
Cfa003064 Carpinus fangiana HOM05D003238 ORTHO05D003571 5.6e-10 67.4 68 54.4
arahy.Tifrunner.gnm1.ann1.57GLQM Arachis hypogaea HOM05D003238 ORTHO05D003571 7.4e-10 67.0 70 51.4
Lj4C292G2 Lonicera japonica HOM05D003238 ORTHO05D003571 7.4e-10 67.0 63 58.7
Lalb_Chr08g0232341 Lupinus albus HOM05D003238 ORTHO05D003571 7.4e-10 67.0 66 54.5
Phvul.009G231100 Phaseolus vulgaris HOM05D003238 ORTHO05D003571 7.4e-10 67.0 65 55.4
TWI32G0644 Tripterygium wilfordii HOM05D003238 ORTHO05D003571 7.4e-10 67.0 62 59.7
CiPaw.03G213000 Carya illinoinensis HOM05D003238 ORTHO05D003571 9.6e-10 66.6 62 50.0
COL.COLO4_18181 Corchorus olitorius HOM05D003238 ORTHO05D003571 9.6e-10 66.6 47 70.2
Thhalv10019375m.g Eutrema salsugineum HOM05D003238 ORTHO05D003571 1.3e-09 66.2 50 60.0
PGSC0003DMG400000275 Solanum tuberosum HOM05D003238 ORTHO05D003571 1.6e-09 65.9 52 65.4
TAR624G1148 Trochodendron aralioides HOM05D003238 ORTHO05D003571 1.6e-09 65.9 97 44.3
CSS0012761 Camellia sinensis var. sinensis HOM05D003238 ORTHO05D003571 2.1e-09 65.5 76 47.4
A09p28910 Brassica napus HOM05D003238 ORTHO05D003571 2.8e-09 65.1 55 60.0
BraA09t38454Z Brassica rapa HOM05D003238 ORTHO05D003571 2.8e-09 65.1 55 60.0
MD15G1209800 Malus domestica HOM05D003238 ORTHO05D003571 3.7e-09 64.7 87 47.1
Prupe.7G206700 Prunus persica HOM05D003238 ORTHO05D003571 4.8e-09 64.3 88 51.1
CARHR270740 Cardamine hirsuta HOM05D003238 ORTHO05D003571 6.2e-09 63.9 61 59.0
Eucgr.C00871 Eucalyptus grandis HOM05D003238 ORTHO05D003571 6.2e-09 63.9 57 56.1
C02p14700 Brassica napus HOM05D003238 ORTHO05D003571 8.1e-09 63.5 69 55.1
BolC2t07595H Brassica oleracea HOM05D003238 ORTHO05D003571 8.1e-09 63.5 69 55.1
Lj6g0026431 Lotus japonicus HOM05D003238 ORTHO05D003571 8.1e-09 63.5 68 52.9
Sp1g15630 Schrenkiella parvula HOM05D003238 ORTHO05D003571 8.1e-09 63.5 54 63.0
BcaB05g22307 Brassica carinata HOM05D003238 ORTHO05D003571 1.1e-08 63.2 75 52.0
Sp6g18700 Schrenkiella parvula HOM05D003238 ORTHO05D003571 1.1e-08 63.2 55 61.8
Solyc12g008950.2 Solanum lycopersicum HOM05D003238 ORTHO05D003571 1.1e-08 63.2 52 61.5
Aa31LG7G2200 Aethionema arabicum HOM05D003238 ORTHO05D003571 1.4e-08 62.8 63 52.4
BcaC03g14186 Brassica carinata HOM05D003238 ORTHO05D003571 1.4e-08 62.8 81 50.6
A06p13430 Brassica napus HOM05D003238 ORTHO05D003571 1.4e-08 62.8 59 54.2
BraA06t24495Z Brassica rapa HOM05D003238 ORTHO05D003571 1.4e-08 62.8 59 54.2
DCAR_031339 Daucus carota HOM05D003238 ORTHO05D003571 1.4e-08 62.8 63 55.6
DCAR_031341 Daucus carota HOM05D003238 ORTHO05D003571 1.4e-08 62.8 63 55.6
MD02G1082200 Malus domestica HOM05D003238 ORTHO05D003571 1.4e-08 62.8 76 48.7
Sopen12g003880 Solanum pennellii HOM05D003238 ORTHO05D003571 1.4e-08 62.8 74 48.6
MELO3C006025.2 Cucumis melo HOM05D003238 ORTHO05D003571 1.8e-08 62.4 56 58.9
Peaxi162Scf00498g00436 Petunia axillaris HOM05D003238 ORTHO05D003571 2.4e-08 62.0 67 50.7
BcaNung05568 Brassica carinata HOM05D003238 ORTHO05D003571 3.1e-08 61.6 58 58.6
arahy.Tifrunner.gnm1.ann1.ZSY109 Arachis hypogaea HOM05D003238 ORTHO05D003571 4.0e-08 61.2 46 65.2
HanXRQChr06g0178591 Helianthus annuus HOM05D003238 ORTHO05D003571 4.0e-08 61.2 72 47.2
CSS0032672 Camellia sinensis var. sinensis HOM05D003238 ORTHO05D003571 5.3e-08 60.8 55 56.4
Lsat_1_v5_gn_8_86760 Lactuca sativa HOM05D003238 ORTHO05D003571 5.3e-08 60.8 72 50.0
AL1G29780 Arabidopsis lyrata HOM05D003238 ORTHO05D003571 6.9e-08 60.5 67 55.2
Ciclev10026836m.g Citrus clementina HOM05D003238 ORTHO05D003571 6.9e-08 60.5 64 54.7
CsaV3_3G008070 Cucumis sativus L. HOM05D003238 ORTHO05D003571 1.2e-07 59.7 44 63.6
BcaNung05566 Brassica carinata HOM05D003238 ORTHO05D003571 1.5e-07 59.3 58 56.9
A02p08810 Brassica napus HOM05D003238 ORTHO05D003571 1.5e-07 59.3 81 50.6
C05p15920 Brassica napus HOM05D003238 ORTHO05D003571 1.5e-07 59.3 58 56.9
BolC5t30295H Brassica oleracea HOM05D003238 ORTHO05D003571 1.5e-07 59.3 58 56.9
BraA02t05948Z Brassica rapa HOM05D003238 ORTHO05D003571 1.5e-07 59.3 81 50.6
AUR62009849 Chenopodium quinoa HOM05D003238 ORTHO05D003571 1.5e-07 59.3 56 55.4
CARHR018090 Cardamine hirsuta HOM05D003238 ORTHO05D003571 2.0e-07 58.9 78 51.3
AT1G17490 Arabidopsis thaliana HOM05D003238 ORTHO05D003571 2.6e-07 58.5 77 51.9
Medtr8g017610 Medicago truncatula HOM05D003238 ORTHO05D003571 4.5e-07 57.8 98 43.9
Carub.0001s1726 Capsella rubella HOM05D003238 ORTHO05D003571 5.8e-07 57.4 67 53.7
Lalb_Chr04g0263271 Lupinus albus HOM05D003238 ORTHO05D003571 5.8e-07 57.4 64 51.6
Lj3g0007714 Lotus japonicus HOM05D003238 ORTHO05D003571 9.9e-07 56.6 64 51.6
Sabra04G0064600 Salix brachista HOM05D003238 ORTHO05D003571 1.3e-06 56.2 67 44.8
GSVIVG01016802001 Vitis vinifera HOM05D003238 ORTHO05D003571 2.2e-06 55.5 75 49.3
BcaB03g15008 Brassica carinata HOM05D003238 ORTHO05D003571 2.9e-06 55.1 50 52.0
arahy.Tifrunner.gnm1.ann1.HS5001 Arachis hypogaea HOM05D003238 ORTHO05D003571 3.8e-06 54.7 64 50.0
Sc14g0000680 Simmondsia chinensis HOM05D051806 ORTHO05D003571 3.8e-06 54.7 65 50.8
QL05p009982 Quercus lobata HOM05D003238 ORTHO05D003571 4.9e-06 54.3 63 47.6
Aqoxy7G04029 Aquilegia oxysepala HOM05D003238 ORTHO05D003571 6.4e-06 53.9 63 49.2
MELO3C024380.2 Cucumis melo HOM05D003238 ORTHO05D003571 6.4e-06 53.9 58 53.4
arahy.Tifrunner.gnm1.ann1.7T9QNI Arachis hypogaea HOM05D003238 ORTHO05D003571 8.4e-06 53.5 64 50.0


User provided reference genes

Program Settings