Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G2923 Fragaria x ananassa HOM05D005200 ORTHO05D005760 8.6e-78 293.5 141 100.0
FAN14G3672 Fragaria x ananassa HOM05D005200 ORTHO05D005760 8.6e-78 293.5 141 100.0
FvH4_6g35780 Fragaria vesca HOM05D005200 ORTHO05D005760 1.6e-76 289.3 141 97.9
FAN14G2768 Fragaria x ananassa HOM05D005200 ORTHO05D005760 1.6e-76 289.3 141 97.9
FAN09G2652 Fragaria x ananassa HOM05D005200 ORTHO05D005760 2.8e-76 288.5 141 97.2
FAN05G3446 Fragaria x ananassa HOM05D005200 ORTHO05D005760 2.9e-73 278.5 141 96.5
RcHm_v2.0_Chr2g0147821 Rosa chinensis HOM05D005200 ORTHO05D005760 2.1e-63 245.7 141 86.5
Prupe.3G031300 Prunus persica HOM05D005200 ORTHO05D005760 3.2e-40 168.7 142 68.3
MD09G1173200 Malus domestica HOM05D005200 ORTHO05D005760 7.4e-37 157.5 144 61.8
MD17G1154100 Malus domestica HOM05D005200 ORTHO05D005760 5.3e-35 151.4 145 61.4
CANSAT56G3023 Cannabis sativa HOM05D005200 ORTHO05D005760 3.9e-30 135.2 140 52.9
Dinv20386 Davidia involucrata HOM05D005200 ORTHO05D005760 3.9e-30 135.2 141 53.9
Dinv37821 Davidia involucrata HOM05D005200 ORTHO05D005760 1.5e-26 123.2 138 51.4
Ciclev10026732m.g Citrus clementina HOM05D005200 ORTHO05D005760 2.5e-24 115.9 141 47.5
Oeu008400.1 Olea europaea HOM05D005200 ORTHO05D005760 3.6e-23 112.1 97 54.6
CiPaw.01G211800 Carya illinoinensis HOM05D005200 ORTHO05D005760 4.6e-23 111.7 139 47.5
CiPaw.02G131300 Carya illinoinensis HOM05D005200 ORTHO05D005760 5.1e-22 108.2 140 45.0
Haze_16132 Corylus avellana HOM05D005200 ORTHO05D005760 8.8e-22 107.5 139 48.9
Potri.001G163100 Populus trichocarpa HOM05D005200 ORTHO05D005760 8.8e-22 107.5 143 44.8
Eucgr.I02161 Eucalyptus grandis HOM05D005200 ORTHO05D005760 2.6e-21 105.9 141 42.6
COL.COLO4_30860 Corchorus olitorius HOM05D005200 ORTHO05D005760 7.4e-21 104.4 139 45.3
Sabra03G0043200 Salix brachista HOM05D005200 ORTHO05D005760 9.7e-21 104.0 138 43.5
TWI23G1266 Tripterygium wilfordii HOM05D005200 ORTHO05D005760 1.7e-20 103.2 141 42.6
Sabra01G0129600 Salix brachista HOM05D005200 ORTHO05D005760 2.2e-20 102.8 142 42.3
AUR62001409 Chenopodium quinoa HOM05D000001 ORTHO05D009753 4.8e-20 101.7 142 44.4
Sed0021338 Sechium edule HOM05D005200 ORTHO05D005760 4.8e-20 101.7 143 46.2
Duzib160G0856 Durio zibethinus HOM05D005200 ORTHO05D005760 1.4e-19 100.1 142 39.4
QL05p001275 Quercus lobata HOM05D005200 ORTHO05D005760 1.8e-19 99.8 143 44.8
ClCG09G001380 Citrullus lanatus HOM05D005200 ORTHO05D005760 5.3e-19 98.2 147 42.2
TWI14G0574 Tripterygium wilfordii HOM05D005200 ORTHO05D005760 5.3e-19 98.2 113 46.9
GSVIVG01016673001 Vitis vinifera HOM05D005200 ORTHO05D005760 6.9e-19 97.8 110 46.4
Atru.chr1.4140 Acer truncatum HOM05D005200 ORTHO05D005760 9.1e-19 97.4 148 41.9
Duzib235G1369 Durio zibethinus HOM05D005200 ORTHO05D005760 9.1e-19 97.4 124 43.5
Actinidia31148 Actinidia chinensis HOM05D005200 ORTHO05D005760 3.4e-18 95.5 141 45.4
Lalb_Chr04g0261221 Lupinus albus HOM05D005200 ORTHO05D005760 3.4e-18 95.5 129 39.5
PGR119G0182 Punica granatum HOM05D005200 ORTHO05D005760 4.5e-18 95.1 121 44.6
Gohir.A06G143500 Gossypium hirsutum HOM05D005200 ORTHO05D005760 7.7e-18 94.4 124 40.3
AUR62025618 Chenopodium quinoa HOM05D000001 ORTHO05D009753 1.0e-17 94.0 122 46.7
CsaV3_7G033950 Cucumis sativus L. HOM05D005200 ORTHO05D005760 1.0e-17 94.0 133 42.1
Gorai.010G173300 Gossypium raimondii HOM05D005200 ORTHO05D005760 2.9e-17 92.4 124 41.9
MELO3C024308.2 Cucumis melo HOM05D005200 ORTHO05D005760 5.0e-17 91.7 138 41.3
Manes.04G150600 Manihot esculenta HOM05D005200 ORTHO05D005760 6.5e-17 91.3 131 42.7
Thecc.06G129700 Theobroma cacao HOM05D005200 ORTHO05D005760 6.5e-17 91.3 124 41.9
Cfa003464 Carpinus fangiana HOM05D005200 ORTHO05D005760 8.5e-17 90.9 85 54.1
Manes.11G013000 Manihot esculenta HOM05D005200 ORTHO05D005760 1.1e-16 90.5 140 42.1
Lalb_Chr15g0076711 Lupinus albus HOM05D005200 ORTHO05D005760 1.4e-16 90.1 142 36.6
Glyma.19G262400 Glycine max HOM05D005200 ORTHO05D005760 1.9e-16 89.7 143 39.9
Gohir.A10G047648 Gossypium hirsutum HOM05D005200 ORTHO05D005760 1.9e-16 89.7 125 44.0
Gorai.011G055500 Gossypium raimondii HOM05D005200 ORTHO05D005760 1.9e-16 89.7 125 44.0
Actinidia26000 Actinidia chinensis HOM05D005200 ORTHO05D005760 4.2e-16 88.6 137 43.8
Gohir.D10G051950 Gossypium hirsutum HOM05D005200 ORTHO05D005760 1.2e-15 87.0 125 43.2
TAR626G1734 Trochodendron aralioides HOM05D005200 ORTHO05D005760 1.2e-15 87.0 137 40.9
arahy.Tifrunner.gnm1.ann1.7PP1M3 Arachis hypogaea HOM05D005200 ORTHO05D005760 1.6e-15 86.7 118 41.5
Glyma.03G263400 Glycine max HOM05D005200 ORTHO05D005760 2.1e-15 86.3 143 40.6
PSO135G0283 Papaver somniferum HOM05D005200 ORTHO05D005760 3.6e-15 85.5 123 37.4
THA.LOC104810392 Tarenaya hassleriana HOM05D005200 ORTHO05D005760 6.1e-15 84.7 126 40.5
Migut.I01128 Erythranthe guttata HOM05D005200 ORTHO05D005760 7.9e-15 84.3 87 51.7
arahy.Tifrunner.gnm1.ann1.F1PVR5 Arachis hypogaea HOM05D005200 ORTHO05D005760 1.0e-14 84.0 121 42.1
TPR.G18172 Trifolium pratense HOM05D005200 ORTHO05D005760 1.4e-14 83.6 132 37.9
Phvul.010G123400 Phaseolus vulgaris HOM05D005200 ORTHO05D005760 1.8e-14 83.2 128 39.8
VMungo0331G0914 Vigna mungo HOM05D005200 ORTHO05D005760 1.8e-14 83.2 125 40.0
Aqoxy7G04178 Aquilegia oxysepala HOM05D005200 ORTHO05D005760 3.9e-14 82.0 92 46.7
Glyma.16G013600 Glycine max HOM05D005200 ORTHO05D005760 3.9e-14 82.0 125 39.2
Lalb_Chr10g0101121 Lupinus albus HOM05D005200 ORTHO05D005760 3.9e-14 82.0 141 38.3
Cpa.g.sc25.187 Carica papaya HOM05D005200 ORTHO05D005760 5.2e-14 81.6 88 50.0
Solyc12g055700.3 Solanum lycopersicum HOM05D005200 ORTHO05D005760 5.2e-14 81.6 113 41.6
Sopen12g024150 Solanum pennellii HOM05D005200 ORTHO05D005760 5.2e-14 81.6 70 51.4
SalBow7G2254 Salvia bowleyana HOM05D005200 ORTHO05D005760 8.8e-14 80.9 114 36.8
Potri.003G072400 Populus trichocarpa HOM05D005200 ORTHO05D005760 1.1e-13 80.5 110 41.8
Actinidia21832 Actinidia chinensis HOM05D005200 ORTHO05D005760 2.0e-13 79.7 114 44.7
MSTRG.10915 Avicennia marina HOM05D005200 ORTHO05D005760 2.6e-13 79.3 112 42.0
THA.LOC104815599 Tarenaya hassleriana HOM05D005200 ORTHO05D005760 2.6e-13 79.3 127 41.7
Nitab4.5_0008798g0020 Nicotiana tabacum HOM05D005200 ORTHO05D005760 3.3e-13 79.0 84 46.4
Lj1g0005720 Lotus japonicus HOM05D005200 ORTHO05D005760 5.7e-13 78.2 149 34.2
Oeu015475.1 Olea europaea HOM05D005200 ORTHO05D005760 7.4e-13 77.8 99 40.4
VMungo1309G1714 Vigna mungo HOM05D005200 ORTHO05D005760 7.4e-13 77.8 103 40.8
THA.LOC104822615 Tarenaya hassleriana HOM05D005200 ORTHO05D005760 9.7e-13 77.4 127 39.4
MSTRG.4536 Avicennia marina HOM05D005200 ORTHO05D005760 1.3e-12 77.0 83 44.6
Medtr7g117550 Medicago truncatula HOM05D005200 ORTHO05D005760 1.3e-12 77.0 123 39.0
Peaxi162Scf00038g02243 Petunia axillaris HOM05D005200 ORTHO05D005760 1.3e-12 77.0 125 36.8
Ah.08g217360 Amaranthus hybridus HOM05D005200 ORTHO05D005760 2.2e-12 76.3 130 40.0
Gohir.D06G148800 Gossypium hirsutum HOM05D005200 ORTHO05D005760 2.2e-12 76.3 85 47.1
Solyc03g123580.4 Solanum lycopersicum HOM05D005200 ORTHO05D005760 2.2e-12 76.3 82 46.3
PGSC0003DMG400009175 Solanum tuberosum HOM05D005200 ORTHO05D005760 2.2e-12 76.3 94 41.5
PGSC0003DMG402028848 Solanum tuberosum HOM05D005200 ORTHO05D005760 2.2e-12 76.3 84 42.9
SalBow6G5493 Salvia bowleyana HOM05D005200 ORTHO05D005760 2.8e-12 75.9 65 56.9
Aa31LG8G1550 Aethionema arabicum HOM05D005200 ORTHO05D005760 3.7e-12 75.5 108 42.6
Phvul.009G261901 Phaseolus vulgaris HOM05D005200 ORTHO05D005760 3.7e-12 75.5 88 46.6
BcaB04g18835 Brassica carinata HOM05D005200 ORTHO05D005760 6.3e-12 74.7 100 43.0
Thhalv10021716m.g Eutrema salsugineum HOM05D005200 ORTHO05D005760 6.3e-12 74.7 124 39.5
Sopen03g041350 Solanum pennellii HOM05D005200 ORTHO05D005760 6.3e-12 74.7 82 46.3
CARHR089210 Cardamine hirsuta HOM05D005200 ORTHO05D005760 8.2e-12 74.3 62 56.5
DCAR_007659 Daucus carota HOM05D005200 ORTHO05D005760 8.2e-12 74.3 101 40.6
Cc04_g00760 Coffea canephora HOM05D005200 ORTHO05D005760 1.4e-11 73.6 110 43.6
AT3G14280 Arabidopsis thaliana HOM05D005200 ORTHO05D005760 1.8e-11 73.2 101 42.6
C01p50260 Brassica napus HOM05D005200 ORTHO05D005760 1.8e-11 73.2 92 44.6
BolC1t04981H Brassica oleracea HOM05D005200 ORTHO05D005760 1.8e-11 73.2 92 44.6
vmacro15084 Vaccinium macrocarpon HOM05D005200 ORTHO05D005760 1.8e-11 73.2 130 40.8
arahy.Tifrunner.gnm1.ann1.KXG0W2 Arachis hypogaea HOM05D005200 ORTHO05D005760 2.4e-11 72.8 146 37.7
BcaC05g29096 Brassica carinata HOM05D005200 ORTHO05D005760 2.4e-11 72.8 117 41.9
C05p53060 Brassica napus HOM05D005200 ORTHO05D005760 2.4e-11 72.8 117 41.9
BolC5t33987H Brassica oleracea HOM05D005200 ORTHO05D005760 2.4e-11 72.8 117 41.9
Carub.0003s1397 Capsella rubella HOM05D005200 ORTHO05D005760 2.4e-11 72.8 86 47.7
Lj3g0024707 Lotus japonicus HOM05D005200 ORTHO05D005760 2.4e-11 72.8 128 37.5
Hund18641 Selenicereus undatus HOM05D005200 ORTHO05D005760 2.4e-11 72.8 141 37.6
arahy.Tifrunner.gnm1.ann1.56RDUW Arachis hypogaea HOM05D005200 ORTHO05D005760 3.1e-11 72.4 146 37.7
A01p39430 Brassica napus HOM05D005200 ORTHO05D005760 3.1e-11 72.4 115 37.4
BraA01t03983Z Brassica rapa HOM05D005200 ORTHO05D005760 3.1e-11 72.4 115 37.4
Gohir.A09G075600 Gossypium hirsutum HOM05D005200 ORTHO05D005760 3.1e-11 72.4 131 37.4
Gohir.D09G075300 Gossypium hirsutum HOM05D005200 ORTHO05D005760 4.1e-11 72.0 135 35.6
Gorai.006G090400 Gossypium raimondii HOM05D005200 ORTHO05D005760 4.1e-11 72.0 135 35.6
AL3G26600 Arabidopsis lyrata HOM05D005200 ORTHO05D005760 5.3e-11 71.6 75 49.3
Nn6g35724 Nelumbo nucifera HOM05D005200 ORTHO05D005760 5.3e-11 71.6 103 38.8
Rhsim08G0244400 Rhododendron simsii HOM05D005200 ORTHO05D005760 7.0e-11 71.2 109 42.2
Sp3g12570 Schrenkiella parvula HOM05D005200 ORTHO05D005760 7.0e-11 71.2 101 41.6
BcaC09g48397 Brassica carinata HOM05D005200 ORTHO05D005760 9.1e-11 70.9 90 44.4
BraA05t22323Z Brassica rapa HOM05D005200 ORTHO05D005760 1.6e-10 70.1 107 40.2
BcaB06g25397 Brassica carinata HOM05D005200 ORTHO05D005760 2.6e-10 69.3 117 41.0
Glyma.07G045700 Glycine max HOM05D005200 ORTHO05D005760 4.5e-10 68.6 125 35.2
A05p35100 Brassica napus HOM05D005200 ORTHO05D005760 5.9e-10 68.2 107 39.3
Ah.15g094950 Amaranthus hybridus HOM05D005200 ORTHO05D005760 1.7e-09 66.6 135 34.1
ATR0099G034 Amborella trichopoda HOM05D005200 ORTHO05D005760 6.5e-09 64.7 81 43.2
Lalb_Chr17g0343251 Lupinus albus HOM05D005200 ORTHO05D005760 1.1e-08 63.9 138 34.1
ECA234G4728 Erigeron canadensis HOM05D005200 ORTHO05D005760 1.5e-08 63.5 115 35.7
HPP92_005865 Vanilla planifolia HOM05D005200 ORTHO05D005760 2.5e-08 62.8 94 38.3
Medtr8g023100 Medicago truncatula HOM05D005200 ORTHO05D005760 4.2e-08 62.0 133 33.1
MBI19_g32869_MAGBIO Magnolia biondii HOM05D005200 ORTHO05D005760 9.4e-08 60.8 109 40.4
ClCG07G014310 Citrullus lanatus HOM05D005200 ORTHO05D005760 1.2e-07 60.5 147 36.1
HanXRQChr09g0277231 Helianthus annuus HOM05D005200 ORTHO05D005760 1.6e-07 60.1 56 48.2
Lsat_1_v5_gn_4_92221 Lactuca sativa HOM05D005200 ORTHO05D005760 2.7e-07 59.3 64 46.9
Psat4g165560 Pisum sativum HOM05D005200 ORTHO05D005760 2.7e-07 59.3 98 37.8
HanXRQChr12g0360121 Helianthus annuus HOM05D005200 ORTHO05D005760 8.0e-07 57.8 111 32.4
HanXRQChr10g0311991 Helianthus annuus HOM05D005200 ORTHO05D005760 1.0e-06 57.4 111 34.2
Lsat_1_v5_gn_5_137940 Lactuca sativa HOM05D005200 ORTHO05D005760 1.4e-06 57.0 77 37.7
Os06g0193300 Oryza sativa ssp. japonica HOM05D005200 ORTHO05D005760 2.3e-06 56.2 35 57.1
SGA_v2.0_scaffold71G23919 Striga asiatica HOM05D005200 ORTHO05D005760 3.0e-06 55.8 47 48.9
AagrBONN_evm.TU.Sc2ySwM_228.2768 Anthoceros agrestis HOM05D005200 ORTHO05D005760 8.8e-06 54.3 70 38.6
Zm00001eb278460 Zea mays HOM05D005200 ORTHO05D005760 8.8e-06 54.3 30 66.7


User provided reference genes

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