Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN14G3655 Fragaria x ananassa HOM05D000092 ORTHO05D013212 1.7e-57 225.7 110 100.0
FvH4_6g30670 Fragaria vesca HOM05D021529 ORTHO05D009449 1.4e-43 179.5 92 94.6
FvH4_1g18111 Fragaria vesca HOM05D000092 ORTHO05D000042 5.0e-41 171.0 107 81.3
FAN09G0693 Fragaria x ananassa HOM05D000092 ORTHO05D013212 1.2e-31 139.8 70 95.7
FAN23G0689 Fragaria x ananassa HOM05D000092 ORTHO05D013212 1.2e-31 139.8 70 95.7
FvH4_4g10330 Fragaria vesca HOM05D000092 ORTHO05D013212 2.8e-31 138.7 70 94.3
FAN10G2225 Fragaria x ananassa HOM05D000092 ORTHO05D013212 4.7e-31 137.9 69 95.7
FAN12G0890 Fragaria x ananassa HOM05D013649 ORTHO05D013212 4.7e-31 137.9 70 94.3
FAN12G1856 Fragaria x ananassa HOM05D013649 ORTHO05D013212 1.4e-30 136.3 70 92.9
FAN02G2371 Fragaria x ananassa HOM05D013649 ORTHO05D013212 1.6e-23 112.8 81 72.8
FvH4_1g18142 Fragaria vesca HOM05D000092 ORTHO05D013212 1.4e-22 109.8 70 74.3
FAN19G1959 Fragaria x ananassa HOM05D000092 ORTHO05D013212 1.4e-22 109.8 62 83.9
RcHm_v2.0_Chr2g0108611 Rosa chinensis HOM05D000092 ORTHO05D000042 1.9e-19 99.4 70 68.6
RcHm_v2.0_Chr4g0397781 Rosa chinensis HOM05D000092 ORTHO05D000042 2.1e-10 69.3 68 47.1
FAN06G3901 Fragaria x ananassa HOM05D000092 ORTHO05D000042 3.5e-10 68.6 94 43.6
FAN06G5058 Fragaria x ananassa HOM05D000092 ORTHO05D000042 1.0e-09 67.0 85 42.4
Haze_03350 Corylus avellana HOM05D000092 ORTHO05D000042 2.3e-09 65.9 68 45.6
FAN08G2136 Fragaria x ananassa HOM05D005885 ORTHO05D000042 2.3e-09 65.9 58 51.7
MD08G1083200 Malus domestica HOM05D000092 ORTHO05D000042 2.3e-09 65.9 60 46.7
GSVIVG01036191001 Vitis vinifera HOM05D000092 ORTHO05D000042 2.3e-09 65.9 50 60.0
Ciclev10010949m.g Citrus clementina HOM05D000092 ORTHO05D000042 3.0e-09 65.5 62 46.8
MD08G1083700 Malus domestica HOM05D000092 ORTHO05D000042 3.9e-09 65.1 60 46.7
FAN06G3762 Fragaria x ananassa HOM05D000092 ORTHO05D000042 5.1e-09 64.7 93 41.9
RcHm_v2.0_Chr7g0204231 Rosa chinensis HOM05D000092 ORTHO05D000042 6.6e-09 64.3 61 52.5
FvH4_5g05380 Fragaria vesca HOM05D000092 ORTHO05D000042 8.7e-09 63.9 62 50.0
FAN06G4836 Fragaria x ananassa HOM05D000092 ORTHO05D000042 8.7e-09 63.9 63 49.2
FAN18G2635 Fragaria x ananassa HOM05D000092 ORTHO05D000042 8.7e-09 63.9 62 50.0
FvH4_3g04780 Fragaria vesca HOM05D000092 ORTHO05D000042 1.1e-08 63.5 67 47.8
GSVIVG01023563001 Vitis vinifera HOM05D000092 ORTHO05D000042 1.1e-08 63.5 76 40.8
FAN14G0094 Fragaria x ananassa HOM05D000092 ORTHO05D000042 1.5e-08 63.2 64 48.4
Cfa021360 Carpinus fangiana HOM05D000092 ORTHO05D000042 1.9e-08 62.8 51 51.0
COL.COLO4_28603 Corchorus olitorius HOM05D000092 ORTHO05D000042 1.9e-08 62.8 58 50.0
QL03p003333 Quercus lobata HOM05D000092 ORTHO05D000042 1.9e-08 62.8 69 47.8
Ciclev10000123m.g Citrus clementina HOM05D000092 ORTHO05D000042 2.5e-08 62.4 72 43.1
Gorai.007G290700 Gossypium raimondii HOM05D000092 ORTHO05D000042 2.5e-08 62.4 65 47.7
CiPaw.08G170400 Carya illinoinensis HOM05D000092 ORTHO05D000042 3.3e-08 62.0 78 42.3
CiPaw.16G081300 Carya illinoinensis HOM05D000092 ORTHO05D000042 3.3e-08 62.0 65 44.6
Potri.005G042900 Populus trichocarpa HOM05D000092 ORTHO05D000042 3.3e-08 62.0 67 44.8
GSVIVG01023566001 Vitis vinifera HOM05D000092 ORTHO05D000042 3.3e-08 62.0 67 44.8
Gorai.007G290400 Gossypium raimondii HOM05D000092 ORTHO05D000042 4.3e-08 61.6 67 43.3
Sabra13G0018700 Salix brachista HOM05D000092 ORTHO05D000042 4.3e-08 61.6 75 40.0
TWI32G0088 Tripterygium wilfordii HOM05D000092 ORTHO05D000042 4.3e-08 61.6 52 51.9
TWI32G0338 Tripterygium wilfordii HOM05D000092 ORTHO05D000042 4.3e-08 61.6 52 51.9
CiPaw.08G168600 Carya illinoinensis HOM05D000092 ORTHO05D000042 5.6e-08 61.2 65 46.2
FvH4_7g31140 Fragaria vesca HOM05D000092 ORTHO05D000042 5.6e-08 61.2 63 47.6
RcHm_v2.0_Chr4g0397921 Rosa chinensis HOM05D000092 ORTHO05D000042 5.6e-08 61.2 65 50.8
TWI32G0180 Tripterygium wilfordii HOM05D000092 ORTHO05D000042 5.6e-08 61.2 50 54.0
TWI32G0989 Tripterygium wilfordii HOM05D000092 ORTHO05D000042 5.6e-08 61.2 59 49.2
FvH4_6g53580 Fragaria vesca HOM05D000092 ORTHO05D000042 7.3e-08 60.8 64 46.9
FAN13G2821 Fragaria x ananassa HOM05D000092 ORTHO05D000042 7.3e-08 60.8 58 48.3
FAN25G0354 Fragaria x ananassa HOM05D000092 ORTHO05D000042 7.3e-08 60.8 64 46.9
MD09G1274400 Malus domestica HOM05D000092 ORTHO05D000042 7.3e-08 60.8 52 53.8
QL03p003203 Quercus lobata HOM05D000092 ORTHO05D000042 7.3e-08 60.8 68 41.2
Sabra13G0018200 Salix brachista HOM05D000092 ORTHO05D000042 7.3e-08 60.8 69 42.0
Thecc.05G202500 Theobroma cacao HOM05D000092 ORTHO05D000042 7.3e-08 60.8 50 58.0
Thecc.10G092500 Theobroma cacao HOM05D000092 ORTHO05D000042 7.3e-08 60.8 79 44.3
Haze_04283 Corylus avellana HOM05D000092 ORTHO05D000042 9.6e-08 60.5 68 44.1
Eucgr.G00803 Eucalyptus grandis HOM05D000092 ORTHO05D000042 9.6e-08 60.5 52 50.0
FAN21G2588 Fragaria x ananassa HOM05D000092 ORTHO05D000042 9.6e-08 60.5 87 40.2
Potri.013G015700 Populus trichocarpa HOM05D000092 ORTHO05D000042 9.6e-08 60.5 68 42.6
FAN12G2478 Fragaria x ananassa HOM05D000092 ORTHO05D000042 1.3e-07 60.1 99 40.4
FAN21G2004 Fragaria x ananassa HOM05D000092 ORTHO05D000042 1.3e-07 60.1 64 46.9
Gohir.D11G270100 Gossypium hirsutum HOM05D000092 ORTHO05D000042 1.3e-07 60.1 65 46.2
Gohir.D11G270300 Gossypium hirsutum HOM05D000092 ORTHO05D000042 1.3e-07 60.1 65 47.7
QL03p003358 Quercus lobata HOM05D000092 ORTHO05D000042 1.3e-07 60.1 68 42.6
Sabra13G0019600 Salix brachista HOM05D000092 ORTHO05D000042 1.3e-07 60.1 47 53.2
Ciclev10013992m.g Citrus clementina HOM05D000092 ORTHO05D000042 1.6e-07 59.7 63 42.9
Sabra13G0014100 Salix brachista HOM05D000092 ORTHO05D000042 1.6e-07 59.7 69 42.0
Sabra13G0014200 Salix brachista HOM05D000092 ORTHO05D000042 1.6e-07 59.7 69 40.6
TWI32G0012 Tripterygium wilfordii HOM05D000092 ORTHO05D000042 1.6e-07 59.7 56 50.0
Gohir.A11G260000 Gossypium hirsutum HOM05D000092 ORTHO05D000042 2.1e-07 59.3 58 50.0
Sabra13G0015300 Salix brachista HOM05D000092 ORTHO05D000042 2.1e-07 59.3 47 51.1
Sabra13G0019000 Salix brachista HOM05D000092 ORTHO05D000042 2.1e-07 59.3 52 50.0
Thecc.K0003600 Theobroma cacao HOM05D000092 ORTHO05D000042 2.1e-07 59.3 79 41.8
Ciclev10013995m.g Citrus clementina HOM05D000092 ORTHO05D000042 2.8e-07 58.9 60 45.0
Duzib128G0326 Durio zibethinus HOM05D000092 ORTHO05D000042 2.8e-07 58.9 59 50.8
Gohir.D11G270000 Gossypium hirsutum HOM05D000092 ORTHO05D000042 2.8e-07 58.9 58 50.0
Gorai.007G290300 Gossypium raimondii HOM05D000092 ORTHO05D000042 2.8e-07 58.9 58 50.0
Potri.013G015900 Populus trichocarpa HOM05D000092 ORTHO05D000042 2.8e-07 58.9 68 41.2
PGR031G0027 Punica granatum HOM05D000092 ORTHO05D000042 2.8e-07 58.9 48 52.1
PGR031G0923 Punica granatum HOM05D000092 ORTHO05D000042 2.8e-07 58.9 48 52.1
PGR035G0003 Punica granatum HOM05D000092 ORTHO05D000042 2.8e-07 58.9 48 52.1
RcHm_v2.0_Chr7g0201391 Rosa chinensis HOM05D000092 ORTHO05D000042 2.8e-07 58.9 59 47.5
Sabra13G0019200 Salix brachista HOM05D000092 ORTHO05D000042 2.8e-07 58.9 47 53.2
GSVIVG01023551001 Vitis vinifera HOM05D000092 ORTHO05D000042 2.8e-07 58.9 76 35.5
FvH4_3g05070 Fragaria vesca HOM05D000092 ORTHO05D000042 3.6e-07 58.5 87 39.1
FvH4_5g18992 Fragaria vesca HOM05D000092 ORTHO05D000042 3.6e-07 58.5 53 49.1
QL03p001787 Quercus lobata HOM05D000092 ORTHO05D000042 3.6e-07 58.5 68 42.6
Sabra13G0013800 Salix brachista HOM05D000092 ORTHO05D000042 3.6e-07 58.5 69 42.0
COL.COLO4_13586 Corchorus olitorius HOM05D000092 ORTHO05D000042 4.8e-07 58.2 74 40.5
Sabra13G0014400 Salix brachista HOM05D000092 ORTHO05D000042 4.8e-07 58.2 47 51.1
Sabra13G0018000 Salix brachista HOM05D000092 ORTHO05D000042 4.8e-07 58.2 47 51.1
CiPaw.08G176800 Carya illinoinensis HOM05D000092 ORTHO05D000042 6.2e-07 57.8 62 41.9
MD09G1272000 Malus domestica HOM05D000092 ORTHO05D000042 6.2e-07 57.8 59 47.5
MD09G1274100 Malus domestica HOM05D000092 ORTHO05D000042 6.2e-07 57.8 52 50.0
PGR031G2517 Punica granatum HOM05D000092 ORTHO05D000042 6.2e-07 57.8 48 52.1
Sabra13G0014000 Salix brachista HOM05D000092 ORTHO05D000042 6.2e-07 57.8 47 51.1
GSVIVG01023570001 Vitis vinifera HOM05D000092 ORTHO05D000042 6.2e-07 57.8 96 32.3
CiPaw.08G175500 Carya illinoinensis HOM05D000092 ORTHO05D000042 8.1e-07 57.4 67 38.8
Ciclev10000151m.g Citrus clementina HOM05D000092 ORTHO05D000042 8.1e-07 57.4 61 42.6
Eucgr.G00886 Eucalyptus grandis HOM05D000092 ORTHO05D000042 8.1e-07 57.4 50 50.0
FAN16G0572 Fragaria x ananassa HOM05D000092 ORTHO05D000042 8.1e-07 57.4 62 45.2
MD09G1272400 Malus domestica HOM05D000092 ORTHO05D000042 8.1e-07 57.4 58 48.3
QL03p002457 Quercus lobata HOM05D000092 ORTHO05D000042 8.1e-07 57.4 59 47.5
QL03p032559 Quercus lobata HOM05D000092 ORTHO05D000042 8.1e-07 57.4 55 43.6
Sabra13G0019700 Salix brachista HOM05D000092 ORTHO05D005874 8.1e-07 57.4 47 51.1
CiPaw.08G170600 Carya illinoinensis HOM05D000092 ORTHO05D000042 1.1e-06 57.0 78 38.5
COL.COLO4_13538 Corchorus olitorius HOM05D000092 ORTHO05D000042 1.4e-06 56.6 79 43.0
QL03p001771 Quercus lobata HOM05D000092 ORTHO05D000042 1.4e-06 56.6 59 47.5
RcHm_v2.0_Chr7g0203351 Rosa chinensis HOM05D000092 ORTHO05D000042 1.4e-06 56.6 60 43.3
Cfa019907 Carpinus fangiana HOM05D000092 ORTHO05D000042 1.8e-06 56.2 56 46.4
CiPaw.08G176700 Carya illinoinensis HOM05D000092 ORTHO05D000042 1.8e-06 56.2 49 49.0
MD13G1197600 Malus domestica HOM05D000092 ORTHO05D000042 1.8e-06 56.2 59 44.1
QL03p002957 Quercus lobata HOM05D000092 ORTHO05D000042 1.8e-06 56.2 55 50.9
QL03p003094 Quercus lobata HOM05D000092 ORTHO05D000042 1.8e-06 56.2 53 52.8
QL09p045493 Quercus lobata HOM05D000092 ORTHO05D000042 1.8e-06 56.2 69 42.0
Sabra13G0013900 Salix brachista HOM05D000092 ORTHO05D000042 1.8e-06 56.2 47 46.8
GSVIVG01023548001 Vitis vinifera HOM05D000092 ORTHO05D000042 1.8e-06 56.2 50 52.0
Duzib177G0959 Durio zibethinus HOM05D000092 ORTHO05D000042 2.4e-06 55.8 70 41.4
Eucgr.G00728 Eucalyptus grandis HOM05D000092 ORTHO05D000042 2.4e-06 55.8 53 49.1
PGR031G1624 Punica granatum HOM05D000092 ORTHO05D000042 2.4e-06 55.8 48 50.0
PGR031G3137 Punica granatum HOM05D000092 ORTHO05D000042 2.4e-06 55.8 48 50.0
QL03p001664 Quercus lobata HOM05D000092 ORTHO05D000042 2.4e-06 55.8 59 45.8
QL03p032375 Quercus lobata HOM05D000092 ORTHO05D000042 2.4e-06 55.8 92 34.8
Cpa.g.c40686 Carica papaya HOM05D000092 ORTHO05D000042 3.1e-06 55.5 70 35.7
Cfa021128 Carpinus fangiana HOM05D000092 ORTHO05D000042 3.1e-06 55.5 68 44.1
CiPaw.08G134200 Carya illinoinensis HOM05D000092 ORTHO05D000042 3.1e-06 55.5 66 39.4
Sabra13G0018900 Salix brachista HOM05D000092 ORTHO05D000042 3.1e-06 55.5 69 40.6
Thecc.05G203100 Theobroma cacao HOM05D000092 ORTHO05D000042 3.1e-06 55.5 50 52.0
Cfa020985 Carpinus fangiana HOM05D000092 ORTHO05D000042 4.0e-06 55.1 68 41.2
Ciclev10000228m.g Citrus clementina HOM05D000092 ORTHO05D000042 4.0e-06 55.1 61 41.0
FAN18G2363 Fragaria x ananassa HOM05D000092 ORTHO05D000042 4.0e-06 55.1 53 47.2
Sabra13G0018100 Salix brachista HOM05D000092 ORTHO05D000042 4.0e-06 55.1 86 38.4
Sabra13G0018500 Salix brachista HOM05D000092 ORTHO05D000042 4.0e-06 55.1 86 38.4
Sabra13G0019500 Salix brachista HOM05D000092 ORTHO05D000042 4.0e-06 55.1 90 36.7
Thecc.05G202700 Theobroma cacao HOM05D000092 ORTHO05D000042 4.0e-06 55.1 50 54.0
Cpa.g.c32363 Carica papaya HOM05D000092 ORTHO05D000042 5.3e-06 54.7 68 36.8
CiPaw.07G074100 Carya illinoinensis HOM05D000092 ORTHO05D000042 5.3e-06 54.7 61 44.3
CiPaw.08G171100 Carya illinoinensis HOM05D000092 ORTHO05D000042 5.3e-06 54.7 49 46.9
Duzib177G0159 Durio zibethinus HOM05D000092 ORTHO05D000042 5.3e-06 54.7 50 52.0
Duzib177G0488 Durio zibethinus HOM05D000092 ORTHO05D000042 5.3e-06 54.7 50 52.0
Atru.chr2.550 Acer truncatum HOM05D000092 ORTHO05D000042 6.9e-06 54.3 57 43.9
Cfa006503 Carpinus fangiana HOM05D000092 ORTHO05D000042 6.9e-06 54.3 68 42.6
CiPaw.08G175100 Carya illinoinensis HOM05D000092 ORTHO05D000042 6.9e-06 54.3 49 46.9
COL.COLO4_13568 Corchorus olitorius HOM05D000092 ORTHO05D000042 6.9e-06 54.3 46 52.2
Eucgr.G00693 Eucalyptus grandis HOM05D000092 ORTHO05D000042 6.9e-06 54.3 53 47.2
Eucgr.G00788 Eucalyptus grandis HOM05D000092 ORTHO05D000042 6.9e-06 54.3 91 35.2
Eucgr.G00860 Eucalyptus grandis HOM05D000092 ORTHO05D000042 6.9e-06 54.3 52 50.0
MD15G1070000 Malus domestica HOM05D000092 ORTHO05D000042 6.9e-06 54.3 52 46.2
QL03p002163 Quercus lobata HOM05D000092 ORTHO05D000042 6.9e-06 54.3 59 45.8
Thecc.05G203000 Theobroma cacao HOM05D000092 ORTHO05D000042 6.9e-06 54.3 60 51.7
Haze_04281 Corylus avellana HOM05D000092 ORTHO05D000042 9.0e-06 53.9 52 50.0
Potri.005G042400 Populus trichocarpa HOM05D000092 ORTHO05D000042 9.0e-06 53.9 66 40.9


User provided reference genes

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