Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN14G1484 Fragaria x ananassa HOM05D003495 ORTHO05D004159 0.0e+00 3055.8 1522 100.0
FAN14G3604 Fragaria x ananassa HOM05D003495 ORTHO05D004159 0.0e+00 3055.8 1522 100.0
FvH4_6g46050 Fragaria vesca HOM05D003495 ORTHO05D004159 0.0e+00 3050.4 1522 99.8
FAN09G4792 Fragaria x ananassa HOM05D003495 ORTHO05D004159 0.0e+00 3015.7 1522 98.5
FAN02G1990 Fragaria x ananassa HOM05D003495 ORTHO05D004159 0.0e+00 3011.9 1522 98.4
FAN05G3267 Fragaria x ananassa HOM05D003495 ORTHO05D004159 0.0e+00 2986.8 1522 97.8
RcHm_v2.0_Chr2g0164371 Rosa chinensis HOM05D003495 ORTHO05D004159 0.0e+00 2971.0 1519 97.3
Prupe.3G246500 Prunus persica HOM05D003495 ORTHO05D004159 0.0e+00 2922.1 1519 95.0
MD09G1077600 Malus domestica HOM05D003495 ORTHO05D004159 0.0e+00 2918.3 1519 94.6
MD17G1067900 Malus domestica HOM05D003495 ORTHO05D004159 0.0e+00 2907.5 1519 94.8
QL02p063585 Quercus lobata HOM05D003495 ORTHO05D004159 0.0e+00 2806.5 1520 91.0
Cfa007716 Carpinus fangiana HOM05D003495 ORTHO05D004159 0.0e+00 2769.6 1519 90.3
Haze_14358 Corylus avellana HOM05D003495 ORTHO05D004159 0.0e+00 2766.5 1519 90.1
Cpa.g.sc14.256 Carica papaya HOM05D003495 ORTHO05D004159 0.0e+00 2751.9 1522 89.4
Ciclev10010888m.g Citrus clementina HOM05D003495 ORTHO05D004159 0.0e+00 2745.3 1522 89.5
CANSAT64G2734 Cannabis sativa HOM05D003495 ORTHO05D004159 0.0e+00 2730.7 1522 89.2
CsaV3_5G038800 Cucumis sativus L. HOM05D003495 ORTHO05D004159 0.0e+00 2730.7 1520 88.6
Manes.01G104801 Manihot esculenta HOM05D003495 ORTHO05D004159 0.0e+00 2729.9 1519 89.1
Atru.chr8.588 Acer truncatum HOM05D003495 ORTHO05D004159 0.0e+00 2729.5 1520 89.1
MELO3C022060.2 Cucumis melo HOM05D003495 ORTHO05D004159 0.0e+00 2725.7 1520 88.6
Dinv34893 Davidia involucrata HOM05D003495 ORTHO05D004159 0.0e+00 2725.3 1521 88.8
Actinidia18095 Actinidia chinensis HOM05D003495 ORTHO05D004159 0.0e+00 2715.3 1521 88.6
TWI60G0296 Tripterygium wilfordii HOM05D003495 ORTHO05D004159 0.0e+00 2712.9 1522 88.6
Cc07_g04650 Coffea canephora HOM05D003495 ORTHO05D004159 0.0e+00 2709.9 1520 88.0
Thecc.02G251800 Theobroma cacao HOM05D003495 ORTHO05D004159 0.0e+00 2705.2 1521 88.2
TAR374G0385 Trochodendron aralioides HOM05D003495 ORTHO05D004159 0.0e+00 2690.6 1524 87.5
DCAR_011000 Daucus carota HOM05D003495 ORTHO05D004159 0.0e+00 2687.9 1521 87.7
Sed0005421 Sechium edule HOM05D003495 ORTHO05D004159 0.0e+00 2676.0 1520 87.0
Lj4C126G12 Lonicera japonica HOM05D003495 ORTHO05D004159 0.0e+00 2675.2 1521 88.0
Gorai.005G181800 Gossypium raimondii HOM05D003495 ORTHO05D004159 0.0e+00 2674.0 1521 87.6
Duzib268G1709 Durio zibethinus HOM05D003495 ORTHO05D004159 0.0e+00 2671.3 1522 87.3
CSS0004216 Camellia sinensis var. sinensis HOM05D003495 ORTHO05D004159 0.0e+00 2666.7 1521 86.9
PGR004G1253 Punica granatum HOM05D003495 ORTHO05D004159 0.0e+00 2664.4 1519 87.4
Nitab4.5_0002978g0060 Nicotiana tabacum HOM05D003495 ORTHO05D004159 0.0e+00 2660.9 1521 86.7
CSS0018508 Camellia sinensis var. sinensis HOM05D003495 ORTHO05D004159 0.0e+00 2658.6 1521 87.4
Nitab4.5_0002171g0110 Nicotiana tabacum HOM05D003495 ORTHO05D004159 0.0e+00 2654.8 1539 85.6
Sopen02g034150 Solanum pennellii HOM05D003495 ORTHO05D004159 0.0e+00 2654.4 1520 86.3
CSS0005441 Camellia sinensis var. sinensis HOM05D003495 ORTHO05D004159 0.0e+00 2654.0 1521 87.3
Lalb_Chr02g0158651 Lupinus albus HOM05D003495 ORTHO05D004159 0.0e+00 2654.0 1520 86.1
Hma1.2p1_0588F.1_g184640 Hydrangea macrophylla HOM05D003495 ORTHO05D004159 0.0e+00 2650.9 1525 86.4
Peaxi162Scf00020g02133 Petunia axillaris HOM05D003495 ORTHO05D004159 0.0e+00 2650.2 1521 86.3
Dinv33880 Davidia involucrata HOM05D003495 ORTHO05D004159 0.0e+00 2647.5 1477 88.8
Potri.017G106100 Populus trichocarpa HOM05D003495 ORTHO05D004159 0.0e+00 2647.1 1522 86.9
Sed0015478 Sechium edule HOM05D003495 ORTHO05D004159 0.0e+00 2646.3 1519 85.8
Oeu062191.1 Olea europaea HOM05D003495 ORTHO05D004159 0.0e+00 2644.0 1520 86.7
AT5G15680 Arabidopsis thaliana HOM05D003495 ORTHO05D004159 0.0e+00 2643.2 1525 85.8
AL6G26520 Arabidopsis lyrata HOM05D003495 ORTHO05D004159 0.0e+00 2642.5 1525 86.0
CARHR197650 Cardamine hirsuta HOM05D003495 ORTHO05D004159 0.0e+00 2642.5 1525 86.2
Glyma.11G061700 Glycine max HOM05D003495 ORTHO05D004159 0.0e+00 2640.5 1520 85.9
CAN.G497.44 Capsicum annuum HOM05D003495 ORTHO05D004159 0.0e+00 2639.8 1520 86.2
Carub.0006s1383 Capsella rubella HOM05D003495 ORTHO05D004159 0.0e+00 2637.1 1525 85.7
A02p03170 Brassica napus HOM05D003495 ORTHO05D004159 0.0e+00 2635.9 1522 85.7
BraA02t05287Z Brassica rapa HOM05D003495 ORTHO05D004159 0.0e+00 2635.9 1522 85.7
Thhalv10012410m.g Eutrema salsugineum HOM05D003495 ORTHO05D004159 0.0e+00 2635.5 1528 85.7
ClCG11G005050 Citrullus lanatus HOM05D003495 ORTHO05D004159 0.0e+00 2634.8 1519 86.2
Phvul.004G045000 Phaseolus vulgaris HOM05D003495 ORTHO05D004159 0.0e+00 2634.8 1518 86.0
C02p07920 Brassica napus HOM05D003495 ORTHO05D004159 0.0e+00 2634.0 1522 85.7
BolC2t06715H Brassica oleracea HOM05D003495 ORTHO05D004159 0.0e+00 2634.0 1522 85.7
Sp6g28440 Schrenkiella parvula HOM05D003495 ORTHO05D004159 0.0e+00 2633.2 1525 85.6
THA.LOC104820987 Tarenaya hassleriana HOM05D003495 ORTHO05D004159 0.0e+00 2632.8 1528 86.1
Aa31LG11G13890 Aethionema arabicum HOM05D003495 ORTHO05D004159 0.0e+00 2632.1 1526 85.5
Medtr6g016215 Medicago truncatula HOM05D003495 ORTHO05D004159 0.0e+00 2630.9 1520 85.6
Glyma.19G037200 Glycine max HOM05D003495 ORTHO05D004159 0.0e+00 2629.4 1520 85.9
BcaC03g18444 Brassica carinata HOM05D003495 ORTHO05D004159 0.0e+00 2627.8 1522 85.4
THA.LOC104802983 Tarenaya hassleriana HOM05D003495 ORTHO05D004159 0.0e+00 2627.0 1522 85.5
BcaNung02199 Brassica carinata HOM05D003495 ORTHO05D004159 0.0e+00 2625.9 1522 85.3
Peaxi162Scf00479g01011 Petunia axillaris HOM05D003495 ORTHO05D004159 0.0e+00 2625.9 1529 85.2
Lj2g0019402 Lotus japonicus HOM05D003495 ORTHO05D004159 0.0e+00 2624.0 1520 85.7
vmacro05603 Vaccinium macrocarpon HOM05D003495 ORTHO05D004159 0.0e+00 2620.1 1523 85.6
Eucgr.I02084 Eucalyptus grandis HOM05D003495 ORTHO05D004159 0.0e+00 2616.6 1523 85.0
arahy.Tifrunner.gnm1.ann1.AQF1TQ Arachis hypogaea HOM05D003495 ORTHO05D004159 0.0e+00 2612.8 1530 84.9
Hund25028 Selenicereus undatus HOM05D003495 ORTHO05D004159 0.0e+00 2608.6 1523 85.1
TAR622G0597 Trochodendron aralioides HOM05D003495 ORTHO05D004159 0.0e+00 2607.8 1521 85.4
Gohir.A03G138900 Gossypium hirsutum HOM05D003495 ORTHO05D004159 0.0e+00 2600.1 1521 85.9
Psat1g064160 Pisum sativum HOM05D003495 ORTHO05D004159 0.0e+00 2598.9 1521 84.7
Migut.K00878 Erythranthe guttata HOM05D003495 ORTHO05D004159 0.0e+00 2598.2 1524 85.3
MSTRG.3380 Avicennia marina HOM05D003495 ORTHO05D004159 0.0e+00 2593.1 1521 85.1
Sopen03g010670 Solanum pennellii HOM05D003495 ORTHO05D004159 0.0e+00 2593.1 1521 84.3
HanXRQChr15g0464911 Helianthus annuus HOM05D003495 ORTHO05D004159 0.0e+00 2589.3 1523 84.5
Solyc03g046450.3 Solanum lycopersicum HOM05D003495 ORTHO05D004159 0.0e+00 2589.3 1521 84.2
TPR.G15949 Trifolium pratense HOM05D003495 ORTHO05D004159 0.0e+00 2588.9 1475 86.8
Aqoxy5G03432 Aquilegia oxysepala HOM05D003495 ORTHO05D004159 0.0e+00 2587.0 1520 84.1
Duzib248G1077 Durio zibethinus HOM05D003495 ORTHO05D004159 0.0e+00 2578.5 1520 85.1
Sc04g0005950 Simmondsia chinensis HOM05D003495 ORTHO05D004159 0.0e+00 2570.0 1523 84.0
AUR62002798 Chenopodium quinoa HOM05D003495 ORTHO05D004159 0.0e+00 2560.8 1524 83.9
EL10Ac6g14290 Beta vulgaris HOM05D003495 ORTHO05D004159 0.0e+00 2556.6 1521 83.6
CAN.G563.4 Capsicum annuum HOM05D003495 ORTHO05D004159 0.0e+00 2554.6 1521 83.3
PSO063G7059 Papaver somniferum HOM05D003495 ORTHO05D004159 0.0e+00 2547.3 1545 82.8
Ah.02g128180 Amaranthus hybridus HOM05D003495 ORTHO05D004159 0.0e+00 2545.4 1522 83.2
AUR62014105 Chenopodium quinoa HOM05D003495 ORTHO05D004159 0.0e+00 2545.4 1524 83.5
GSVIVG01036514001 Vitis vinifera HOM05D003495 ORTHO05D004159 0.0e+00 2544.6 1521 84.5
ECA232G2419 Erigeron canadensis HOM05D003495 ORTHO05D004159 0.0e+00 2525.4 1520 83.4
HanXRQChr15g0489851 Helianthus annuus HOM05D003495 ORTHO05D004159 0.0e+00 2517.7 1522 82.7
Gorai.002G166500 Gossypium raimondii HOM05D003495 ORTHO05D004159 0.0e+00 2507.2 1520 82.6
PSO063G5616 Papaver somniferum HOM05D003495 ORTHO05D004159 0.0e+00 2460.6 1525 81.4
A03p07290 Brassica napus HOM05D003495 ORTHO05D004159 0.0e+00 2451.4 1525 80.5
BraA03t10052Z Brassica rapa HOM05D003495 ORTHO05D004159 0.0e+00 2441.8 1532 79.7
C03p08360 Brassica napus HOM05D003495 ORTHO05D004159 0.0e+00 2428.7 1525 80.1
BolC3t13343H Brassica oleracea HOM05D003495 ORTHO05D004159 0.0e+00 2422.1 1533 79.5
VMungo0464G1145 Vigna mungo HOM05D003495 ORTHO05D004159 0.0e+00 2378.6 1385 85.4
Oeu032840.1 Olea europaea HOM05D003495 ORTHO05D004159 0.0e+00 2364.0 1521 78.9
CiPaw.03G081100 Carya illinoinensis HOM05D003495 ORTHO05D004159 0.0e+00 2343.9 1275 91.5
BcaB01g05032 Brassica carinata HOM05D003495 ORTHO05D004159 0.0e+00 2309.6 1513 77.4
CDE04G3053 Ceratophyllum demersum HOM05D003495 ORTHO05D004159 0.0e+00 2220.3 1523 74.1
unitig_748.g7269 Utricularia gibba HOM05D003495 ORTHO05D004159 0.0e+00 2206.0 1364 82.3
Gohir.A01G142600 Gossypium hirsutum HOM05D003495 ORTHO05D004159 0.0e+00 2205.6 1312 84.0
ATR0618G126 Amborella trichopoda HOM05D003495 ORTHO05D004159 0.0e+00 2203.3 1534 73.9
Zm00001eb190620 Zea mays HOM05D003495 ORTHO05D004159 0.0e+00 2189.5 1534 72.4
ECA238G4655 Erigeron canadensis HOM05D003495 ORTHO05D004159 0.0e+00 2184.5 1523 73.1
Ca_20758_v3 Cicer arietinum L. HOM05D003495 ORTHO05D004159 0.0e+00 2145.5 1199 88.2
Gohir.D01G134500 Gossypium hirsutum HOM05D003495 ORTHO05D004159 0.0e+00 2125.1 1274 83.5
SEGI_22880 Sequoiadendron giganteum HOM05D003495 ORTHO05D004159 0.0e+00 2118.6 1541 71.5
HanXRQChr14g0447961 Helianthus annuus HOM05D003495 ORTHO05D004159 0.0e+00 2110.5 1529 71.0
Lsat_1_v5_gn_2_85980 Lactuca sativa HOM05D003495 ORTHO05D004159 0.0e+00 2087.0 1533 70.8
Mapoly0124s0011 Marchantia polymorpha HOM05D003495 ORTHO05D004159 0.0e+00 2030.0 1562 68.4
HPP92_025565 Vanilla planifolia HOM05D003495 ORTHO05D004159 0.0e+00 2001.1 1298 76.8
SGA_v2.0_scaffold148G36460 Striga asiatica HOM05D003495 ORTHO05D004159 0.0e+00 1986.5 1232 81.3
COL.COLO4_24186 Corchorus olitorius HOM05D003495 ORTHO05D004159 0.0e+00 1984.1 1313 78.4
SMO351G0561 Selaginella moellendorffii HOM05D003495 ORTHO05D004159 0.0e+00 1943.3 1544 66.5
AagrBONN_evm.TU.Sc2ySwM_228.311 Anthoceros agrestis HOM05D003495 ORTHO05D004159 0.0e+00 1942.5 1569 65.5
Hund20735 Selenicereus undatus HOM05D003495 ORTHO05D004159 0.0e+00 1932.9 1276 77.5
Pp3c12_3160 Physcomitrium patens HOM05D003495 ORTHO05D004159 0.0e+00 1880.1 1575 63.4
Pp3c13_5370 Physcomitrium patens HOM05D003495 ORTHO05D004159 0.0e+00 1851.3 1576 62.9
Pp3c3_1860 Physcomitrium patens HOM05D003495 ORTHO05D004159 0.0e+00 1848.6 1569 62.5
Gohir.D02G161820 Gossypium hirsutum HOM05D003495 ORTHO05D004159 0.0e+00 1790.0 998 90.2
Solyc02g089370.2 Solanum lycopersicum HOM05D003495 ORTHO05D004159 0.0e+00 1788.1 1001 87.2
SHI33626 Sapria himalayana HOM05D003495 ORTHO05D004159 0.0e+00 1457.6 1038 72.5
CBR_g31516 Chara braunii HOM05D003495 ORTHO05D004159 0.0e+00 1451.8 1591 51.9
Lsat_1_v5_gn_4_173941 Lactuca sativa HOM05D003495 ORTHO05D004159 0.0e+00 1290.0 725 87.4
Lsat_1_v5_gn_4_173921 Lactuca sativa HOM05D003495 ORTHO05D004159 6.0e-302 1041.6 667 79.9
Nitab4.5_0001397g0040 Nicotiana tabacum HOM05D003495 ORTHO05D004159 4.5e-297 1025.4 1558 42.7
Nn7g37976 Nelumbo nucifera HOM05D003495 ORTHO05D004159 2.5e-247 860.1 502 82.9
Gohir.D02G161860 Gossypium hirsutum HOM05D003495 ORTHO05D004159 7.5e-236 822.0 487 82.3
RcHm_v2.0_Chr2g0117981 Rosa chinensis HOM05D003495 ORTHO05D004159 5.2e-213 746.1 385 96.4
RcHm_v2.0_Chr2g0117961 Rosa chinensis HOM05D003495 ORTHO05D004159 2.7e-185 654.1 348 95.1
Nitab4.5_0000154g0090 Nicotiana tabacum HOM05D003495 ORTHO05D004159 7.0e-165 586.3 377 79.3
RcHm_v2.0_Chr2g0117951 Rosa chinensis HOM05D003495 ORTHO05D004159 4.4e-159 567.0 301 94.4
Os02g0830900 Oryza sativa ssp. japonica HOM05D003495 ORTHO05D004159 6.4e-126 456.8 374 64.7
Actinidia36277 Actinidia chinensis HOM05D003495 ORTHO05D004159 2.4e-125 454.9 264 83.0
arahy.Tifrunner.gnm1.ann1.BVET7T Arachis hypogaea HOM05D003495 ORTHO05D004159 4.4e-119 434.1 244 85.7
CAN.G497.63 Capsicum annuum HOM05D003495 ORTHO05D004159 9.2e-117 426.4 643 46.7
Cre17.g703750 Chlamydomonas reinhardtii HOM05D003495 ORTHO05D004159 6.8e-112 410.2 1355 27.9
Hund20736 Selenicereus undatus HOM05D003495 ORTHO05D004159 5.1e-99 367.5 244 73.4
CAN.G497.69 Capsicum annuum HOM05D003495 ORTHO05D004159 6.4e-94 350.5 395 53.2
CAN.G497.62 Capsicum annuum HOM05D003495 ORTHO05D004159 3.9e-91 341.3 412 50.7
SHI33624 Sapria himalayana HOM05D003495 ORTHO05D004159 6.2e-89 334.0 262 65.3
Ca_20757_v3 Cicer arietinum L. HOM05D003495 ORTHO05D004159 1.2e-79 303.1 208 75.0
SEGI_11817 Sequoiadendron giganteum HOM05D003495 ORTHO05D004159 1.6e-68 266.2 308 53.6
CSS0017914 Camellia sinensis var. sinensis HOM05D003495 ORTHO05D011845 2.8e-65 255.4 140 83.6
CSS0034486 Camellia sinensis var. sinensis HOM05D003495 ORTHO05D011845 8.2e-65 253.8 140 82.9
VMungo0464G0617 Vigna mungo HOM05D003495 ORTHO05D004159 1.1e-56 226.9 130 85.4
Solyc02g089390.3 Solanum lycopersicum HOM05D003495 ORTHO05D004159 1.8e-56 226.1 146 78.1
CSS0011723 Camellia sinensis var. sinensis HOM05D003495 ORTHO05D004159 7.7e-55 220.7 130 83.1
MCO10G374 Micromonas commoda HOM05D003495 ORTHO05D004159 6.5e-54 217.6 623 30.0
unitig_748.g7268 Utricularia gibba HOM05D003495 ORTHO05D004159 4.2e-53 214.9 130 77.7
CAN.G497.66 Capsicum annuum HOM05D003495 ORTHO05D004159 4.4e-50 204.9 269 47.6
Actinidia36278 Actinidia chinensis HOM05D003495 ORTHO05D004159 8.2e-49 200.7 232 53.4
CSS0030310 Camellia sinensis var. sinensis HOM05D003495 ORTHO05D011845 1.8e-48 199.5 140 67.9
Psat6g133600 Pisum sativum HOM05D003495 ORTHO05D004159 2.2e-46 192.6 140 72.9
Os02g0830801 Oryza sativa ssp. japonica HOM05D003495 ORTHO05D004159 1.8e-43 183.0 130 69.2
CAN.G497.68 Capsicum annuum HOM05D003495 ORTHO05D015025 6.7e-43 181.0 145 66.2
HPP92_025566 Vanilla planifolia HOM05D003495 ORTHO05D004159 3.3e-42 178.7 127 68.5
SHI33623 Sapria himalayana HOM05D003495 ORTHO05D004159 1.5e-37 163.3 111 68.5
COL.COLO4_24184 Corchorus olitorius HOM05D003495 ORTHO05D004159 9.1e-24 117.5 64 92.2
Actinidia36279 Actinidia chinensis HOM05D003495 ORTHO05D004159 5.9e-23 114.8 180 43.3
EL10Ac5g11417 Beta vulgaris HOM05D003495 ORTHO05D004159 1.4e-19 103.6 64 71.9
Lsat_1_v5_gn_4_36641 Lactuca sativa HOM05D001412 ORTHO05D002473 4.1e-16 92.0 53 77.4
Cfa023482 Carpinus fangiana HOM05D003495 ORTHO05D125175 1.7e-09 70.1 249 22.9
Psat5g191680 Pisum sativum HOM05D003495 ORTHO05D004159 2.9e-09 69.3 39 92.3
BcaB08g36895 Brassica carinata HOM05D003495 ORTHO05D004159 1.2e-07 63.9 37 83.8
Cfa019719 Carpinus fangiana HOM05D000116 ORTHO05D000133 1.6e-07 63.5 49 63.3


User provided reference genes

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