Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN14G3562 Fragaria x ananassa HOM05D001568 ORTHO05D004404 3.8e-42 174.5 92 100.0
FAN05G3918 Fragaria x ananassa HOM05D001568 ORTHO05D004404 2.0e-27 125.6 70 97.1
FvH4_6g45650 Fragaria vesca HOM05D001568 ORTHO05D004404 1.3e-26 122.9 66 100.0
RcHm_v2.0_Chr2g0163791 Rosa chinensis HOM05D001568 ORTHO05D004404 3.2e-25 118.2 70 94.3
CSS0005518 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 5.9e-19 97.4 71 73.2
CSS0039733 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 5.9e-19 97.4 71 73.2
Eucgr.I02108 Eucalyptus grandis HOM05D001568 ORTHO05D004404 1.3e-18 96.3 70 75.7
Manes.02G064800 Manihot esculenta HOM05D001568 ORTHO05D004404 1.3e-18 96.3 70 77.1
Hma1.2p1_0588F.1_g184400 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 3.8e-18 94.7 70 75.7
Potri.017G109900 Populus trichocarpa HOM05D001568 ORTHO05D004404 3.8e-18 94.7 70 75.7
Prupe.3G242600 Prunus persica HOM05D001568 ORTHO05D004404 5.0e-18 94.4 70 77.1
Potri.017G109800 Populus trichocarpa HOM05D001568 ORTHO05D004404 8.5e-18 93.6 70 74.3
QL02p053549 Quercus lobata HOM05D001568 ORTHO05D004404 2.5e-17 92.0 69 72.5
Phvul.008G021300 Phaseolus vulgaris HOM05D001568 ORTHO05D004404 3.2e-17 91.7 70 71.4
Glyma.18G279700 Glycine max HOM05D001568 ORTHO05D004404 9.5e-17 90.1 67 74.6
DCAR_010979 Daucus carota HOM05D001568 ORTHO05D004404 3.6e-16 88.2 73 71.2
DCAR_010982 Daucus carota HOM05D001568 ORTHO05D004404 3.6e-16 88.2 73 71.2
Medtr7g019160 Medicago truncatula HOM05D001568 ORTHO05D004404 3.6e-16 88.2 67 71.6
Manes.01G107200 Manihot esculenta HOM05D001568 ORTHO05D004404 4.7e-16 87.8 69 71.0
COL.COLO4_08509 Corchorus olitorius HOM05D001568 ORTHO05D004404 6.1e-16 87.4 71 70.4
TAR622G0735 Trochodendron aralioides HOM05D000764 ORTHO05D002006 6.1e-16 87.4 70 68.6
Glyma.19G042000 Glycine max HOM05D001568 ORTHO05D004404 8.0e-16 87.0 69 73.9
Thecc.04G144700 Theobroma cacao HOM05D001568 ORTHO05D004404 1.8e-15 85.9 70 71.4
Glyma.13G049300 Glycine max HOM05D001568 ORTHO05D004404 3.0e-15 85.1 68 73.5
Lj1g0007549 Lotus japonicus HOM05D001568 ORTHO05D004404 3.0e-15 85.1 67 68.7
Migut.H00549 Erythranthe guttata HOM05D001568 ORTHO05D004404 4.0e-15 84.7 67 62.7
Potri.004G105900 Populus trichocarpa HOM05D001568 ORTHO05D004404 4.0e-15 84.7 70 71.4
Nn3g17638 Nelumbo nucifera HOM05D001568 ORTHO05D004404 5.2e-15 84.3 70 65.7
Sabra17G0091900 Salix brachista HOM05D001568 ORTHO05D004404 8.8e-15 83.6 67 70.1
CiPaw.04G004300 Carya illinoinensis HOM05D001568 ORTHO05D004404 1.2e-14 83.2 60 78.3
Atru.chr8.777 Acer truncatum HOM05D001568 ORTHO05D004404 2.0e-14 82.4 68 69.1
Lsat_1_v5_gn_4_175441 Lactuca sativa HOM05D001568 ORTHO05D004404 3.4e-14 81.6 68 69.1
Phvul.004G048600 Phaseolus vulgaris HOM05D001568 ORTHO05D004404 3.4e-14 81.6 67 68.7
CAN.G497.17 Capsicum annuum HOM05D001568 ORTHO05D004404 5.7e-14 80.9 69 68.1
Solyc02g089660.2 Solanum lycopersicum HOM05D001568 ORTHO05D004404 5.7e-14 80.9 69 68.1
Nn4g23635 Nelumbo nucifera HOM05D001568 ORTHO05D004404 7.5e-14 80.5 70 65.7
Oeu032864.1 Olea europaea HOM05D001568 ORTHO05D004404 7.5e-14 80.5 71 66.2
Sed0003724 Sechium edule HOM05D001568 ORTHO05D004404 7.5e-14 80.5 71 63.4
Lalb_Chr17g0336571 Lupinus albus HOM05D001568 ORTHO05D004404 1.3e-13 79.7 67 65.7
Lsat_1_v5_gn_3_94821 Lactuca sativa HOM05D001568 ORTHO05D004404 1.7e-13 79.3 87 57.5
PGSC0003DMG400010048 Solanum tuberosum HOM05D001568 ORTHO05D004404 1.7e-13 79.3 68 67.6
TAR629G2968 Trochodendron aralioides HOM05D001568 ORTHO05D004404 2.2e-13 79.0 69 62.3
HanXRQChr10g0283701 Helianthus annuus HOM05D001568 ORTHO05D004404 2.8e-13 78.6 80 60.0
TPR.G3300 Trifolium pratense HOM05D001568 ORTHO05D004404 2.8e-13 78.6 87 56.3
TAR371G0241 Trochodendron aralioides HOM05D001568 ORTHO05D004404 2.8e-13 78.6 63 68.3
Cc07_g04900 Coffea canephora HOM05D001568 ORTHO05D004404 3.7e-13 78.2 67 65.7
SalBow1G1780 Salvia bowleyana HOM05D001568 ORTHO05D004404 4.9e-13 77.8 71 62.0
SalBow1G7911 Salvia bowleyana HOM05D001568 ORTHO05D004404 4.9e-13 77.8 71 62.0
ECA246G2394 Erigeron canadensis HOM05D001568 ORTHO05D004404 1.1e-12 76.6 74 62.2
Gohir.A07G073000 Gossypium hirsutum HOM05D001568 ORTHO05D004404 1.8e-12 75.9 74 60.8
Gorai.001G082100 Gossypium raimondii HOM05D001568 ORTHO05D004404 1.8e-12 75.9 74 60.8
Lalb_Chr10g0092401 Lupinus albus HOM05D001568 ORTHO05D004404 1.8e-12 75.9 67 64.2
Gohir.D07G077600 Gossypium hirsutum HOM05D001568 ORTHO05D004404 2.4e-12 75.5 74 60.8
Medtr6g016890 Medicago truncatula HOM05D001568 ORTHO05D004404 7.0e-12 73.9 64 64.1
PGSC0003DMG400019661 Solanum tuberosum HOM05D001568 ORTHO05D004404 2.0e-11 72.4 69 63.8
Sed0014020 Sechium edule HOM05D001568 ORTHO05D004404 2.7e-11 72.0 70 61.4
arahy.Tifrunner.gnm1.ann1.R2NHXZ Arachis hypogaea HOM05D001568 ORTHO05D004404 5.9e-11 70.9 74 59.5
AUR62008943 Chenopodium quinoa HOM05D001568 ORTHO05D004404 7.8e-11 70.5 71 62.0
arahy.Tifrunner.gnm1.ann1.IG7GQE Arachis hypogaea HOM05D001568 ORTHO05D004404 1.0e-10 70.1 74 60.8
Atru.chr5.2306 Acer truncatum HOM05D001568 ORTHO05D004404 1.3e-10 69.7 67 59.7
THA.LOC104822692 Tarenaya hassleriana HOM05D001568 ORTHO05D004404 5.0e-10 67.8 69 56.5
CiPaw.03G006700 Carya illinoinensis HOM05D001568 ORTHO05D004404 2.5e-09 65.5 62 66.1
CANSAT25G0020 Cannabis sativa HOM05D001568 ORTHO05D004404 7.3e-09 63.9 61 59.0
Gohir.A03G181200 Gossypium hirsutum HOM05D001568 ORTHO05D004404 9.5e-09 63.5 63 54.0
Ah.10g037380 Amaranthus hybridus HOM05D001568 ORTHO05D004404 1.2e-08 63.2 71 54.9
COL.COLO4_32490 Corchorus olitorius HOM05D001568 ORTHO05D004404 1.6e-08 62.8 63 54.0
Aqoxy6G02530 Aquilegia oxysepala HOM05D001568 ORTHO05D004404 2.1e-08 62.4 68 51.5
Sp5g22130 Schrenkiella parvula HOM05D001568 ORTHO05D004404 2.8e-08 62.0 84 45.2
Lj1g0010962 Lotus japonicus HOM05D001568 ORTHO05D004404 3.6e-08 61.6 59 62.7
Potri.004G105800 Populus trichocarpa HOM05D001568 ORTHO05D004404 3.6e-08 61.6 75 50.7
Gohir.D02G203199 Gossypium hirsutum HOM05D001568 ORTHO05D004404 8.0e-08 60.5 63 52.4
BolC6t39129H Brassica oleracea HOM05D001568 ORTHO05D004404 1.0e-07 60.1 91 42.9
Thhalv10019331m.g Eutrema salsugineum HOM05D001568 ORTHO05D004404 1.0e-07 60.1 84 44.0
Oeu021354.1 Olea europaea HOM05D001568 ORTHO05D004404 1.4e-07 59.7 57 61.4
TWI59G0092 Tripterygium wilfordii HOM05D001568 ORTHO05D004404 1.4e-07 59.7 57 61.4
C06p43090 Brassica napus HOM05D001568 ORTHO05D004404 1.8e-07 59.3 93 41.9
BraA07t31009Z Brassica rapa HOM05D001568 ORTHO05D004404 1.8e-07 59.3 92 42.4
Hma1.2p1_0661F.1_g198120 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 1.8e-07 59.3 63 54.0
QL11p029492 Quercus lobata HOM05D001568 ORTHO05D004404 1.8e-07 59.3 62 56.5
Gohir.A13G047600 Gossypium hirsutum HOM05D001568 ORTHO05D004404 2.3e-07 58.9 63 54.0
Gohir.D13G045900 Gossypium hirsutum HOM05D001568 ORTHO05D004404 2.3e-07 58.9 63 54.0
Gorai.005G230000 Gossypium raimondii HOM05D001568 ORTHO05D004404 2.3e-07 58.9 57 56.1
AL2G25700 Arabidopsis lyrata HOM05D001568 ORTHO05D004404 3.0e-07 58.5 84 42.9
MSTRG.23836 Avicennia marina HOM05D001568 ORTHO05D004404 3.0e-07 58.5 68 45.6
TAR625G0364 Trochodendron aralioides HOM05D001568 ORTHO05D004404 3.0e-07 58.5 63 54.0
A07p33830 Brassica napus HOM05D001568 ORTHO05D004404 4.0e-07 58.2 82 42.7
CiPaw.05G020400 Carya illinoinensis HOM05D001568 ORTHO05D004404 4.0e-07 58.2 68 51.5
FvH4_2g03450 Fragaria vesca HOM05D001568 ORTHO05D004404 4.0e-07 58.2 57 57.9
FAN15G0246 Fragaria x ananassa HOM05D001568 ORTHO05D004404 4.0e-07 58.2 63 52.4
FAN24G1537 Fragaria x ananassa HOM05D001568 ORTHO05D004404 4.0e-07 58.2 57 57.9
Gorai.013G051400 Gossypium raimondii HOM05D001568 ORTHO05D004404 4.0e-07 58.2 63 52.4
Psat0s6663g0040 Pisum sativum HOM05D001568 ORTHO05D004404 4.0e-07 58.2 58 62.1
CSS0019733 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 5.2e-07 57.8 63 54.0
Carub.0002s1347 Capsella rubella HOM05D001568 ORTHO05D004404 5.2e-07 57.8 41 65.9
Haze_10310 Corylus avellana HOM05D001568 ORTHO05D004404 5.2e-07 57.8 63 50.8
DCAR_021945 Daucus carota HOM05D001568 ORTHO05D004404 5.2e-07 57.8 65 58.5
MD05G1104700 Malus domestica HOM05D001568 ORTHO05D004404 5.2e-07 57.8 57 57.9
Potri.009G085800 Populus trichocarpa HOM05D001568 ORTHO05D004404 5.2e-07 57.8 63 52.4
Prupe.8G149100 Prunus persica HOM05D001568 ORTHO05D004404 5.2e-07 57.8 57 57.9
A02p14040 Brassica napus HOM05D001568 ORTHO05D004404 6.8e-07 57.4 41 65.9
BraA02t06465Z Brassica rapa HOM05D001568 ORTHO05D004404 6.8e-07 57.4 41 65.9
Duzib132G0295 Durio zibethinus HOM05D001568 ORTHO05D004404 6.8e-07 57.4 63 50.8
Glyma.01G241700 Glycine max HOM05D001568 ORTHO05D004404 6.8e-07 57.4 57 61.4
Manes.10G086400 Manihot esculenta HOM05D001568 ORTHO05D004404 6.8e-07 57.4 63 52.4
Oeu037288.1 Olea europaea HOM05D001568 ORTHO05D004404 6.8e-07 57.4 57 59.6
AUR62027022 Chenopodium quinoa HOM05D001568 ORTHO05D004404 8.9e-07 57.0 57 52.6
Dinv09541 Davidia involucrata HOM05D001568 ORTHO05D008804 8.9e-07 57.0 63 52.4
Hma1.2p1_1051F.1_g252100 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 8.9e-07 57.0 63 52.4
Hma1.2p1_2793F.1_g328635 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 8.9e-07 57.0 63 52.4
PGR142G4268 Punica granatum HOM05D001568 ORTHO05D004404 8.9e-07 57.0 63 52.4
RcHm_v2.0_Chr6g0248611 Rosa chinensis HOM05D001568 ORTHO05D004404 8.9e-07 57.0 57 57.9
TAR376G0823 Trochodendron aralioides HOM05D001568 ORTHO05D004404 8.9e-07 57.0 63 52.4
CARHR059650 Cardamine hirsuta HOM05D001568 ORTHO05D004404 1.2e-06 56.6 41 63.4
Cpa.g.sc106.34 Carica papaya HOM05D001568 ORTHO05D004404 1.2e-06 56.6 63 52.4
Ciclev10029760m.g Citrus clementina HOM05D001568 ORTHO05D004404 1.2e-06 56.6 62 53.2
Peaxi162Scf00016g03013 Petunia axillaris HOM05D001568 ORTHO05D004404 1.2e-06 56.6 57 57.9
Phvul.002G051000 Phaseolus vulgaris HOM05D001568 ORTHO05D004404 1.2e-06 56.6 52 63.5
SGA_v2.0_scaffold225G43060 Striga asiatica HOM05D001568 ORTHO05D008804 1.2e-06 56.6 75 46.7
TAR628G0963 Trochodendron aralioides HOM05D001568 ORTHO05D004404 1.2e-06 56.6 57 57.9
CSS0000365 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 1.5e-06 56.2 63 52.4
MD10G1109000 Malus domestica HOM05D001568 ORTHO05D004404 1.5e-06 56.2 57 56.1
Manes.07G057600 Manihot esculenta HOM05D001568 ORTHO05D004404 1.5e-06 56.2 57 56.1
Nitab4.5_0001458g0030 Nicotiana tabacum HOM05D001568 ORTHO05D004404 1.5e-06 56.2 57 57.9
Potri.001G290200 Populus trichocarpa HOM05D001568 ORTHO05D004404 1.5e-06 56.2 57 57.9
Solyc01g106890.2 Solanum lycopersicum HOM05D001568 ORTHO05D004404 1.5e-06 56.2 57 57.9
Sopen01g049170 Solanum pennellii HOM05D001568 ORTHO05D004404 1.5e-06 56.2 57 57.9
Nitab4.5_0001099g0080 Nicotiana tabacum HOM05D001568 ORTHO05D004404 2.0e-06 55.8 57 56.1
Peaxi162Scf00003g02832 Petunia axillaris HOM05D001568 ORTHO05D004404 2.0e-06 55.8 59 55.9
PGSC0003DMG400025934 Solanum tuberosum HOM05D001568 ORTHO05D004404 2.0e-06 55.8 57 57.9
PSO017G7292 Papaver somniferum HOM05D001568 ORTHO05D004404 2.6e-06 55.5 61 54.1
PSO170G4708 Papaver somniferum HOM05D001568 ORTHO05D004404 2.6e-06 55.5 61 54.1
PGSC0003DMG400012835 Solanum tuberosum HOM05D001568 ORTHO05D004404 2.6e-06 55.5 58 56.9
CAN.G606.68 Capsicum annuum HOM05D001568 ORTHO05D004404 3.4e-06 55.1 57 56.1
Duzib052G0823 Durio zibethinus HOM05D001568 ORTHO05D004404 3.4e-06 55.1 63 50.8
BolC2t08417H Brassica oleracea HOM05D001568 ORTHO05D004404 4.4e-06 54.7 41 63.4
Nn6g34513 Nelumbo nucifera HOM05D001568 ORTHO05D004404 4.4e-06 54.7 64 51.6
Rhsim05G0092200 Rhododendron simsii HOM05D001568 ORTHO05D004404 4.4e-06 54.7 66 50.0
RhsimUnG0183600 Rhododendron simsii HOM05D001568 ORTHO05D004404 4.4e-06 54.7 66 50.0
SHI05029 Sapria himalayana HOM05D001568 ORTHO05D004404 4.4e-06 54.7 61 52.5
Thecc.02G119400 Theobroma cacao HOM05D001568 ORTHO05D004404 4.4e-06 54.7 57 56.1
Lsat_1_v5_gn_9_113420 Lactuca sativa HOM05D001568 ORTHO05D004404 5.7e-06 54.3 56 53.6
TPR.G8320 Trifolium pratense HOM05D001568 ORTHO05D004404 5.7e-06 54.3 57 61.4
C02p22640 Brassica napus HOM05D001568 ORTHO05D004404 7.5e-06 53.9 84 39.3
MELO3C018020.2 Cucumis melo HOM05D001568 ORTHO05D004404 7.5e-06 53.9 63 50.8
Medtr5g005330 Medicago truncatula HOM05D001568 ORTHO05D004404 7.5e-06 53.9 63 58.7
Sed0001915 Sechium edule HOM05D001568 ORTHO05D004404 7.5e-06 53.9 63 49.2
Nn5g30644 Nelumbo nucifera HOM05D001568 ORTHO05D004404 9.8e-06 53.5 63 47.6


User provided reference genes

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