Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN14G3522 Fragaria x ananassa HOM05D007504 ORTHO05D007629 0.0e+00 1150.6 606 100.0
FvH4_6g00830 Fragaria vesca HOM05D007504 ORTHO05D007629 0.0e+00 1138.3 606 99.2
FAN05G3219 Fragaria x ananassa HOM05D007504 ORTHO05D007629 4.5e-301 1037.3 578 95.7
FAN09G1848 Fragaria x ananassa HOM05D007504 ORTHO05D007629 8.4e-231 803.9 606 75.9
RcHm_v2.0_Chr3g0448301 Rosa chinensis HOM05D007504 ORTHO05D007629 3.2e-169 599.4 622 58.7
MD12G1258000 Malus domestica HOM05D007504 ORTHO05D007629 1.8e-92 344.4 645 42.2
MD04G1241000 Malus domestica HOM05D007504 ORTHO05D007629 2.2e-69 267.7 593 38.6
Prupe.6G358500 Prunus persica HOM05D007504 ORTHO05D007629 5.9e-67 259.6 580 38.4
Dinv02913 Davidia involucrata HOM05D007504 ORTHO05D007629 8.3e-53 212.6 661 34.5
Actinidia38910 Actinidia chinensis HOM05D007504 ORTHO05D007629 3.5e-43 180.6 648 31.3
Cfa006286 Carpinus fangiana HOM05D007504 ORTHO05D007629 5.1e-42 176.8 630 31.0
Lsat_1_v5_gn_8_3001 Lactuca sativa HOM05D007504 ORTHO05D007629 3.3e-41 174.1 639 30.4
Atru.chr12.1547 Acer truncatum HOM05D007504 ORTHO05D007629 4.3e-41 173.7 618 33.0
Cc09_g03320 Coffea canephora HOM05D007504 ORTHO05D007629 1.6e-40 171.8 609 32.0
Lj5g0006161 Lotus japonicus HOM05D007504 ORTHO05D007629 6.4e-37 159.8 647 29.4
Rhsim09G0131100 Rhododendron simsii HOM05D007504 ORTHO05D007629 1.9e-36 158.3 633 28.3
Potri.019G052300 Populus trichocarpa HOM05D007504 ORTHO05D007629 9.2e-36 156.0 624 30.8
TPR.G14656 Trifolium pratense HOM05D007504 ORTHO05D007629 9.2e-36 156.0 635 28.8
Ah.06g195770 Amaranthus hybridus HOM05D007504 ORTHO05D007629 1.2e-35 155.6 650 29.7
Hund21875 Selenicereus undatus HOM05D007504 ORTHO05D007629 2.1e-35 154.8 618 29.6
DCAR_029902 Daucus carota HOM05D007504 ORTHO05D007629 1.0e-34 152.5 711 28.1
TWI14G0943 Tripterygium wilfordii HOM05D007504 ORTHO05D007629 1.0e-34 152.5 625 27.4
CSS0023929 Camellia sinensis var. sinensis HOM05D007504 ORTHO05D007629 3.9e-34 150.6 618 30.4
Ca_09972_v3 Cicer arietinum L. HOM05D007504 ORTHO05D007629 5.1e-34 150.2 633 28.1
CiPaw.07G074500 Carya illinoinensis HOM05D007504 ORTHO05D007629 8.6e-34 149.4 619 28.9
Nitab4.5_0000456g0090 Nicotiana tabacum HOM05D007504 ORTHO05D007629 5.6e-33 146.7 621 28.8
TWI59G0549 Tripterygium wilfordii HOM05D007504 ORTHO05D007629 2.1e-32 144.8 630 27.1
Medtr1g078420 Medicago truncatula HOM05D007504 ORTHO05D007629 2.8e-32 144.4 729 28.5
Nitab4.5_0000276g0060 Nicotiana tabacum HOM05D007504 ORTHO05D007629 2.8e-32 144.4 632 27.8
Gohir.D13G093400 Gossypium hirsutum HOM05D007504 ORTHO05D007629 4.0e-31 140.6 700 28.1
PGSC0003DMG400016931 Solanum tuberosum HOM05D007504 ORTHO05D007629 6.9e-31 139.8 596 27.7
Solyc04g051280.4 Solanum lycopersicum HOM05D007504 ORTHO05D007629 2.0e-30 138.3 624 26.3
Haze_04521 Corylus avellana HOM05D007504 ORTHO05D007629 2.6e-30 137.9 689 27.6
CAN.G29.22 Capsicum annuum HOM05D007504 ORTHO05D007629 7.6e-30 136.3 605 27.6
EL10Ac4g09412 Beta vulgaris HOM05D007504 ORTHO05D007629 9.9e-30 136.0 643 25.8
VMungo0720G1881 Vigna mungo HOM05D007504 ORTHO05D007629 1.7e-29 135.2 591 27.4
Ciclev10011923m.g Citrus clementina HOM05D007504 ORTHO05D007629 2.2e-29 134.8 463 33.0
Gorai.002G147900 Gossypium raimondii HOM05D007504 ORTHO05D007629 2.9e-29 134.4 659 26.1
Gohir.A13G089900 Gossypium hirsutum HOM05D007504 ORTHO05D007629 1.9e-28 131.7 691 26.8
COL.COLO4_06844 Corchorus olitorius HOM05D007504 ORTHO05D007629 9.3e-28 129.4 334 33.8
Thecc.05G204700 Theobroma cacao HOM05D007504 ORTHO05D007629 2.1e-27 128.3 462 31.6
Glyma.20G219900 Glycine max HOM05D007504 ORTHO05D007629 2.7e-27 127.9 637 26.7
Eucgr.H01377 Eucalyptus grandis HOM05D007504 ORTHO05D007629 6.0e-27 126.7 580 27.9
Peaxi162Scf00994g00026 Petunia axillaris HOM05D007504 ORTHO05D007629 6.0e-27 126.7 632 25.9
PGR031G1611 Punica granatum HOM05D007504 ORTHO05D007629 7.8e-27 126.3 623 27.6
arahy.Tifrunner.gnm1.ann1.V3BTAU Arachis hypogaea HOM05D007504 ORTHO05D007629 3.0e-26 124.4 658 26.0
ECA233G2160 Erigeron canadensis HOM05D007504 ORTHO05D007629 3.3e-25 120.9 777 25.1
Manes.08G105000 Manihot esculenta HOM05D007504 ORTHO05D007629 7.3e-25 119.8 607 26.5
Sc09g0001640 Simmondsia chinensis HOM05D007504 ORTHO05D007629 7.3e-25 119.8 630 26.5
GSVIVG01019149001 Vitis vinifera HOM05D007504 ORTHO05D007629 7.3e-25 119.8 152 45.4
Aqoxy2G03947 Aquilegia oxysepala HOM05D007504 ORTHO05D007629 9.6e-25 119.4 576 27.1
QL01p050434 Quercus lobata HOM05D007504 ORTHO05D007629 3.6e-24 117.5 560 27.5
Duzib177G0136 Durio zibethinus HOM05D007504 ORTHO05D007629 6.2e-24 116.7 549 28.6
arahy.Tifrunner.gnm1.ann1.DN7JE5 Arachis hypogaea HOM05D007504 ORTHO05D007629 8.1e-24 116.3 629 25.9
MBI07_g00623_MAGBIO Magnolia biondii HOM05D007504 ORTHO05D007629 4.0e-23 114.0 655 26.0
AUR62006721 Chenopodium quinoa HOM05D007504 ORTHO05D007629 3.8e-21 107.5 846 24.6
Sabra19G0056400 Salix brachista HOM05D007504 ORTHO05D007629 1.9e-20 105.1 621 25.0
Lj7A601T114 Lonicera japonica HOM05D007504 ORTHO05D007629 4.2e-20 104.0 655 24.6
Psat6g051960 Pisum sativum HOM05D007504 ORTHO05D007629 4.2e-20 104.0 373 29.5
QL01p050471 Quercus lobata HOM05D007504 ORTHO05D007629 1.6e-19 102.1 71 63.4
TAR636G3585 Trochodendron aralioides HOM05D007504 ORTHO05D007629 1.8e-18 98.6 93 51.6
ATR0609G092 Amborella trichopoda HOM05D007504 ORTHO05D007629 5.1e-18 97.1 71 63.4
ClCG01G008930 Citrullus lanatus HOM05D007504 ORTHO05D007629 1.1e-17 95.9 235 34.0
CSS0029071 Camellia sinensis var. sinensis HOM05D007504 ORTHO05D007629 5.6e-17 93.6 76 59.2
CsaV3_1G037800 Cucumis sativus L. HOM05D007504 ORTHO05D007629 5.6e-17 93.6 589 25.1
Oeu008540.1 Olea europaea HOM05D007504 ORTHO05D007629 2.8e-16 91.3 94 56.4
PSO017G3378 Papaver somniferum HOM05D007504 ORTHO05D007629 3.6e-16 90.9 149 41.6
TAR636G2263 Trochodendron aralioides HOM05D007504 ORTHO05D007629 4.8e-16 90.5 138 44.9
Cpa.g.sc123.14 Carica papaya HOM05D007504 ORTHO05D007629 6.2e-16 90.1 75 57.3
AT5G36100 Arabidopsis thaliana HOM05D009566 ORTHO05D007629 1.1e-15 89.4 199 32.2
Lalb_Chr21g0311381 Lupinus albus HOM05D007504 ORTHO05D007629 4.0e-15 87.4 245 32.2
Oeu014606.1 Olea europaea HOM05D007504 ORTHO05D007629 4.0e-15 87.4 760 23.0
MELO3C021807.2 Cucumis melo HOM05D007504 ORTHO05D007629 1.5e-14 85.5 297 32.7
Phvul.010G077868 Phaseolus vulgaris HOM05D007504 ORTHO05D007629 2.0e-14 85.1 483 24.8
Thhalv10005424m.g Eutrema salsugineum HOM05D009566 ORTHO05D007629 4.5e-14 84.0 94 47.9
SEGI_35581 Sequoiadendron giganteum HOM05D007504 ORTHO05D007629 5.8e-14 83.6 66 54.5
Sed0012429 Sechium edule HOM05D007504 ORTHO05D007629 1.7e-13 82.0 227 35.2
Sopen04g022690 Solanum pennellii HOM05D007504 ORTHO05D007629 1.7e-13 82.0 494 26.7
CARHR216660 Cardamine hirsuta HOM05D009566 ORTHO05D007629 2.2e-13 81.6 130 41.5
THA.LOC104823805 Tarenaya hassleriana HOM05D009566 ORTHO05D007629 2.2e-13 81.6 96 46.9
BcaC03g14675 Brassica carinata HOM05D009566 ORTHO05D007629 4.9e-13 80.5 77 51.9
BolC2t08254H Brassica oleracea HOM05D009566 ORTHO05D007629 4.9e-13 80.5 77 51.9
Sp7g06100 Schrenkiella parvula HOM05D009566 ORTHO05D007629 4.9e-13 80.5 196 35.2
SGA_v2.0_scaffold10G05147 Striga asiatica HOM05D007504 ORTHO05D007629 4.9e-13 80.5 145 38.6
Carub.0007s3177 Capsella rubella HOM05D009566 ORTHO05D007629 6.4e-13 80.1 118 38.1
BraA02t06358Z Brassica rapa HOM05D009566 ORTHO05D007629 1.9e-12 78.6 89 48.3
SHI33673 Sapria himalayana HOM05D007504 ORTHO05D000001 1.9e-12 78.6 65 55.4
Sc09g0001620 Simmondsia chinensis HOM05D007504 ORTHO05D007629 1.9e-12 78.6 326 27.0
CDE05G2205 Ceratophyllum demersum HOM05D007504 ORTHO05D007629 2.4e-12 78.2 199 31.2
BcaB02g08045 Brassica carinata HOM05D009566 ORTHO05D007629 3.2e-12 77.8 111 43.2
A02p13020 Brassica napus HOM05D009566 ORTHO05D007629 3.2e-12 77.8 175 33.1
BcaB05g24082 Brassica carinata HOM05D009566 ORTHO05D007629 4.2e-12 77.4 96 46.9
BolC4t25935H Brassica oleracea HOM05D009566 ORTHO05D007629 5.5e-12 77.0 105 44.8
BraA04t16670Z Brassica rapa HOM05D009566 ORTHO05D007629 5.5e-12 77.0 94 46.8
A04p10080 Brassica napus HOM05D009566 ORTHO05D007629 7.1e-12 76.6 105 42.9
C02p21140 Brassica napus HOM05D009566 ORTHO05D007629 7.1e-12 76.6 240 30.8
BcaC02g09508 Brassica carinata HOM05D009566 ORTHO05D007629 9.3e-12 76.3 96 46.9
CSS0043883 Camellia sinensis var. sinensis HOM05D007504 ORTHO05D007629 9.3e-12 76.3 326 28.5
Phvul.010G077946 Phaseolus vulgaris HOM05D007504 ORTHO05D007629 9.3e-12 76.3 83 45.8
SalBow6G5451 Salvia bowleyana HOM05D007504 ORTHO05D007629 1.2e-11 75.9 167 34.1
C04p43550 Brassica napus HOM05D009566 ORTHO05D007629 1.6e-11 75.5 183 35.5
Sp5g19730 Schrenkiella parvula HOM05D009566 ORTHO05D007629 2.1e-11 75.1 92 47.8
THA.LOC104821804 Tarenaya hassleriana HOM05D009566 ORTHO05D007629 2.7e-11 74.7 235 32.3
Aa31LG2G2280 Aethionema arabicum HOM05D009566 ORTHO05D007629 3.5e-11 74.3 121 33.9
CDE05G0344 Ceratophyllum demersum HOM05D007504 ORTHO05D007629 6.0e-11 73.6 210 28.1
BcaB06g27006 Brassica carinata HOM05D009566 ORTHO05D007629 1.3e-10 72.4 107 39.3
AT1G65090 Arabidopsis thaliana HOM05D009566 ORTHO05D007629 3.9e-10 70.9 182 30.8
Nn1g08319 Nelumbo nucifera HOM05D007504 ORTHO05D007629 3.9e-10 70.9 50 66.0
Aa31LG9G17880 Aethionema arabicum HOM05D009566 ORTHO05D007629 8.7e-10 69.7 67 53.7
Migut.F01885 Erythranthe guttata HOM05D007504 ORTHO05D007629 1.1e-09 69.3 627 23.8
Glyma.10G170100 Glycine max HOM05D007504 ORTHO05D007629 1.1e-09 69.3 124 39.5
CARHR056580 Cardamine hirsuta HOM05D009566 ORTHO05D007629 5.6e-09 67.0 208 32.7
HPP92_009958 Vanilla planifolia HOM05D007504 ORTHO05D007629 9.6e-09 66.2 578 22.7
Carub.0002s1043 Capsella rubella HOM05D009566 ORTHO05D007629 2.1e-08 65.1 231 29.0
AL7G45070 Arabidopsis lyrata HOM05D009566 ORTHO05D007629 2.8e-08 64.7 135 34.8
AUR62000366 Chenopodium quinoa HOM05D007504 ORTHO05D007629 8.2e-08 63.2 482 25.9
Cpa.g.sc123.15 Carica papaya HOM05D007504 ORTHO05D007629 1.4e-07 62.4 280 28.6
Os12g0506700 Oryza sativa ssp. japonica HOM05D007504 ORTHO05D007629 3.1e-07 61.2 91 41.8
AL2G19730 Arabidopsis lyrata HOM05D009566 ORTHO05D007629 4.0e-07 60.8 179 30.7
Thhalv10022484m.g Eutrema salsugineum HOM05D009566 ORTHO05D007629 2.0e-06 58.5 78 43.6
HPP92_020229 Vanilla planifolia HOM05D007504 ORTHO05D007629 4.5e-06 57.4 62 41.9


User provided reference genes

Program Settings