Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN14G3518 Fragaria x ananassa HOM05D005866 ORTHO05D007078 1.2e-133 479.9 260 100.0
FAN09G2814 Fragaria x ananassa HOM05D000012 ORTHO05D007078 4.1e-118 428.3 260 91.5
FvH4_6g11980 Fragaria vesca HOM05D005866 ORTHO05D007078 1.6e-117 426.4 260 91.5
FAN14G3397 Fragaria x ananassa HOM05D000012 ORTHO05D000567 1.0e-116 423.7 260 90.8
FAN02G1355 Fragaria x ananassa HOM05D005866 ORTHO05D007078 3.6e-114 415.2 260 89.6
FAN05G0379 Fragaria x ananassa HOM05D000012 ORTHO05D000567 2.8e-106 389.0 260 85.8
MD04G1147400 Malus domestica HOM05D005866 ORTHO05D007078 2.9e-95 352.4 260 76.5
Prupe.6G271100 Prunus persica HOM05D000012 ORTHO05D000567 2.2e-87 326.2 260 71.2
Potri.006G096700 Populus trichocarpa HOM05D005866 ORTHO05D007078 7.1e-78 294.7 258 62.8
CiPaw.09G206400 Carya illinoinensis HOM05D005866 ORTHO05D007078 7.9e-69 264.6 247 61.9
CsaV3_4G026010 Cucumis sativus L. HOM05D005866 ORTHO05D007078 6.3e-66 255.0 258 56.2
Gohir.D01G215200 Gossypium hirsutum HOM05D005866 ORTHO05D007078 1.8e-65 253.4 253 58.5
Aa31LG3G1580 Aethionema arabicum HOM05D005866 ORTHO05D007078 3.4e-64 249.2 260 55.0
RcHm_v2.0_Chr3g0463811 Rosa chinensis HOM05D005866 ORTHO05D007078 1.0e-63 247.7 147 93.2
ECA247G0127 Erigeron canadensis HOM05D005866 ORTHO05D007078 3.8e-63 245.7 268 55.6
Dinv35509 Davidia involucrata HOM05D005866 ORTHO05D007078 6.5e-63 245.0 254 59.4
Dinv14530 Davidia involucrata HOM05D005866 ORTHO05D007078 1.4e-62 243.8 254 59.1
Duzib128G1899 Durio zibethinus HOM05D005866 ORTHO05D007078 9.4e-62 241.1 254 57.1
BraA01t04319Z Brassica rapa HOM05D005866 ORTHO05D007078 1.6e-61 240.4 236 56.8
Lj2C80T14 Lonicera japonica HOM05D005866 ORTHO05D007078 1.8e-60 236.9 263 54.0
Glyma.07G145800 Glycine max HOM05D005866 ORTHO05D007078 1.5e-59 233.8 262 55.3
Sabra06G0074300 Salix brachista HOM05D005866 ORTHO05D007078 2.6e-59 233.0 258 52.7
Cpa.g.sc56.117 Carica papaya HOM05D005866 ORTHO05D007078 4.4e-59 232.3 260 55.8
Atru.chr8.2203 Acer truncatum HOM05D005866 ORTHO05D007078 2.2e-58 229.9 263 54.8
Aqoxy1G00701 Aquilegia oxysepala HOM05D005866 ORTHO05D007078 2.2e-58 229.9 253 53.4
Lj3g0009346 Lotus japonicus HOM05D005866 ORTHO05D007078 2.8e-58 229.6 248 54.8
Thecc.05G021700 Theobroma cacao HOM05D005866 ORTHO05D007078 2.8e-58 229.6 253 54.9
AUR62042946 Chenopodium quinoa HOM05D005866 ORTHO05D007078 6.3e-58 228.4 261 52.1
TWI74G1551 Tripterygium wilfordii HOM05D005866 ORTHO05D007078 1.8e-57 226.9 260 53.8
Glyma.18G197300 Glycine max HOM05D005866 ORTHO05D007078 2.0e-56 223.4 260 52.3
TPR.G1580 Trifolium pratense HOM05D005866 ORTHO05D007078 2.0e-56 223.4 262 53.4
Haze_20956 Corylus avellana HOM05D005866 ORTHO05D007078 1.3e-55 220.7 260 52.3
Lj1g0011685 Lotus japonicus HOM05D005866 ORTHO05D007078 2.9e-55 219.5 261 53.3
GSVIVG01034004001 Vitis vinifera HOM05D000012 ORTHO05D000567 2.9e-55 219.5 261 52.1
CSS0007949 Camellia sinensis var. sinensis HOM05D005866 ORTHO05D007078 6.5e-55 218.4 260 53.8
CSS0025068 Camellia sinensis var. sinensis HOM05D005866 ORTHO05D007078 6.5e-55 218.4 260 53.8
Medtr7g067000 Medicago truncatula HOM05D005866 ORTHO05D007078 6.5e-55 218.4 262 51.9
Carub.0003s0821 Capsella rubella HOM05D005866 ORTHO05D007078 3.2e-54 216.1 250 50.8
Ca_07614_v3 Cicer arietinum L. HOM05D005866 ORTHO05D007078 9.4e-54 214.5 265 50.6
Sed0005881 Sechium edule HOM05D005866 ORTHO05D007078 9.4e-54 214.5 260 50.8
Psat3g131120 Pisum sativum HOM05D005866 ORTHO05D007078 1.2e-53 214.2 261 50.6
vmacro08602 Vaccinium macrocarpon HOM05D005866 ORTHO05D007078 1.6e-53 213.8 260 52.7
arahy.Tifrunner.gnm1.ann1.Q1H550 Arachis hypogaea HOM05D005866 ORTHO05D007078 2.1e-53 213.4 259 51.4
BcaC09g48006 Brassica carinata HOM05D005866 ORTHO05D007078 2.7e-53 213.0 208 56.2
AUR62025814 Chenopodium quinoa HOM05D005866 ORTHO05D007078 6.1e-53 211.8 262 50.0
Manes.09G102400 Manihot esculenta HOM05D005866 ORTHO05D007078 1.8e-52 210.3 261 51.3
VMungo1383G0141 Vigna mungo HOM05D005866 ORTHO05D007078 3.0e-52 209.5 260 50.8
Lalb_Chr07g0193301 Lupinus albus HOM05D005866 ORTHO05D007078 3.9e-52 209.1 251 52.6
AL3G20110 Arabidopsis lyrata HOM05D005866 ORTHO05D007078 6.7e-52 208.4 247 50.6
Hund02698 Selenicereus undatus HOM05D005866 ORTHO05D007078 1.5e-51 207.2 270 47.4
ClCG04G007220 Citrullus lanatus HOM05D005866 ORTHO05D007078 2.0e-51 206.8 224 55.8
MELO3C003227.2 Cucumis melo HOM05D005866 ORTHO05D007078 2.6e-51 206.5 241 52.7
TAR623G0986 Trochodendron aralioides HOM05D005866 ORTHO05D007078 3.3e-51 206.1 257 50.2
AT3G09050 Arabidopsis thaliana HOM05D005866 ORTHO05D007078 4.4e-51 205.7 259 48.6
Nn2g11373 Nelumbo nucifera HOM05D005866 ORTHO05D007078 9.7e-51 204.5 229 53.7
BcaC09g48050 Brassica carinata HOM05D005866 ORTHO05D007078 1.3e-50 204.1 246 50.0
Lsat_1_v5_gn_9_36061 Lactuca sativa HOM05D005866 ORTHO05D007078 1.1e-49 201.1 265 49.8
BcaC05g29639 Brassica carinata HOM05D005866 ORTHO05D007078 1.4e-49 200.7 250 48.4
Thhalv10021354m.g Eutrema salsugineum HOM05D005866 ORTHO05D007078 1.4e-49 200.7 261 48.3
Sp3g07500 Schrenkiella parvula HOM05D005866 ORTHO05D007078 2.4e-49 199.9 250 48.0
A05p39790 Brassica napus HOM05D005866 ORTHO05D007078 7.0e-49 198.4 250 48.0
BraA05t22763Z Brassica rapa HOM05D005866 ORTHO05D007078 7.0e-49 198.4 250 48.0
C05p58830 Brassica napus HOM05D005866 ORTHO05D007078 9.1e-49 198.0 250 48.4
Psat7g247600 Pisum sativum HOM05D005866 ORTHO05D007078 1.2e-48 197.6 250 50.0
Phvul.008G107300 Phaseolus vulgaris HOM05D005866 ORTHO05D007078 2.0e-48 196.8 261 49.4
arahy.Tifrunner.gnm1.ann1.LP8IIZ Arachis hypogaea HOM05D005866 ORTHO05D007078 2.6e-48 196.4 259 49.0
BcaC09g48005 Brassica carinata HOM05D005866 ORTHO05D007078 2.6e-48 196.4 208 53.4
CARHR083410 Cardamine hirsuta HOM05D005866 ORTHO05D007078 7.7e-48 194.9 261 46.7
BolC5t34535H Brassica oleracea HOM05D005866 ORTHO05D007078 1.0e-47 194.5 250 47.6
BolC1t05477H Brassica oleracea HOM05D005866 ORTHO05D007078 2.2e-47 193.4 256 47.7
arahy.Tifrunner.gnm1.ann1.QNAF0W Arachis hypogaea HOM05D005866 ORTHO05D007078 8.5e-47 191.4 259 48.3
Ciclev10012537m.g Citrus clementina HOM05D005866 ORTHO05D007078 1.9e-46 190.3 260 48.8
arahy.Tifrunner.gnm1.ann1.T33YJ3 Arachis hypogaea HOM05D005866 ORTHO05D007078 4.2e-46 189.1 258 49.2
ECA247G1841 Erigeron canadensis HOM05D005866 ORTHO05D007078 4.2e-46 189.1 214 55.1
Gohir.A01G225500 Gossypium hirsutum HOM05D005866 ORTHO05D007078 5.5e-46 188.7 253 49.4
arahy.Tifrunner.gnm1.ann1.F83RTD Arachis hypogaea HOM05D005866 ORTHO05D007078 9.4e-46 188.0 258 48.8
COL.COLO4_14593 Corchorus olitorius HOM05D005866 ORTHO05D007078 1.4e-44 184.1 260 51.2
unitig_578.g15896 Utricularia gibba HOM05D005866 ORTHO05D007078 1.4e-44 184.1 264 45.1
THA.LOC104816219 Tarenaya hassleriana HOM05D005866 ORTHO05D007078 4.0e-44 182.6 259 47.5
Eucgr.B02792 Eucalyptus grandis HOM05D005866 ORTHO05D007078 2.0e-43 180.3 269 46.8
PGR031G2542 Punica granatum HOM05D005866 ORTHO05D007078 2.6e-43 179.9 267 50.6
MSTRG.5595 Avicennia marina HOM05D005866 ORTHO05D007078 3.3e-43 179.5 257 46.3
DCAR_015452 Daucus carota HOM05D005866 ORTHO05D007078 3.3e-43 179.5 264 48.1
CANSAT35G0638 Cannabis sativa HOM05D005866 ORTHO05D007078 4.4e-43 179.1 261 46.0
Nitab4.5_0004912g0060 Nicotiana tabacum HOM05D005866 ORTHO05D007078 9.7e-43 177.9 228 48.7
PSO384G0902 Papaver somniferum HOM05D005866 ORTHO05D007078 9.7e-43 177.9 256 43.0
PGSC0003DMG400011090 Solanum tuberosum HOM05D005866 ORTHO05D007078 6.3e-42 175.3 265 43.8
Sopen10g034540 Solanum pennellii HOM05D005866 ORTHO05D007078 8.2e-42 174.9 265 43.8
arahy.Tifrunner.gnm1.ann1.6JA19R Arachis hypogaea HOM05D005866 ORTHO05D007078 1.4e-41 174.1 219 49.3
Ah.12g060060 Amaranthus hybridus HOM05D005866 ORTHO05D007078 3.1e-41 172.9 256 42.6
Peaxi162Scf00141g00718 Petunia axillaris HOM05D005866 ORTHO05D007078 3.1e-41 172.9 260 43.8
Cc06_g01630 Coffea canephora HOM05D005866 ORTHO05D007078 1.2e-40 171.0 258 43.8
Gorai.002G261300 Gossypium raimondii HOM05D005866 ORTHO05D007078 2.0e-40 170.2 253 45.8
CAN.G1297.4 Capsicum annuum HOM05D005866 ORTHO05D007078 4.5e-40 169.1 258 43.8
Sc01g0006840 Simmondsia chinensis HOM05D005866 ORTHO05D007078 4.5e-40 169.1 259 44.8
Zm00001eb367320 Zea mays HOM05D005866 ORTHO05D007078 1.1e-38 164.5 262 43.9
Solyc10g085080.3 Solanum lycopersicum HOM05D005866 ORTHO05D007078 2.1e-37 160.2 280 40.7
Os01g0853000 Oryza sativa ssp. japonica HOM05D005866 ORTHO05D007078 8.0e-37 158.3 237 45.6
SGA_v2.0_scaffold85G26760 Striga asiatica HOM05D005866 ORTHO05D007078 3.0e-36 156.4 144 58.3
Nitab4.5_0000008g0810 Nicotiana tabacum HOM05D005866 ORTHO05D007078 1.5e-35 154.1 261 40.6
Nitab4.5_0000652g0170 Nicotiana tabacum HOM05D005866 ORTHO05D007078 1.5e-35 154.1 230 43.5
Sopen09g007090 Solanum pennellii HOM05D005866 ORTHO05D007078 1.5e-35 154.1 255 40.8
CDE03G0505 Ceratophyllum demersum HOM05D005866 ORTHO05D007078 2.0e-35 153.7 226 44.7
Nitab4.5_0001837g0050 Nicotiana tabacum HOM05D005866 ORTHO05D007078 2.2e-34 150.2 263 40.7
PGSC0003DMG400020319 Solanum tuberosum HOM05D005866 ORTHO05D007078 2.8e-34 149.8 264 40.5
Medtr4g015010 Medicago truncatula HOM05D005866 ORTHO05D007078 3.7e-34 149.4 263 41.4
VMungo0331G1214 Vigna mungo HOM05D005866 ORTHO05D007078 8.3e-34 148.3 249 42.6
TAR633G2503 Trochodendron aralioides HOM05D005866 ORTHO05D007078 1.4e-33 147.5 144 58.3
Actinidia05342 Actinidia chinensis HOM05D005866 ORTHO05D007078 2.4e-33 146.7 197 47.7
CAN.G338.58 Capsicum annuum HOM05D005866 ORTHO05D007078 5.4e-33 145.6 263 39.5
Lj2P1203T18 Lonicera japonica HOM05D005866 ORTHO05D007078 2.0e-32 143.7 150 54.7
Migut.J00221 Erythranthe guttata HOM05D005866 ORTHO05D007078 4.5e-32 142.5 262 40.8
EL10Ac6g13875 Beta vulgaris HOM05D005866 ORTHO05D007078 7.7e-32 141.7 194 44.8
Glyma.03G077300 Glycine max HOM05D005866 ORTHO05D007078 1.7e-31 140.6 252 41.7
Solyc09g014215.2 Solanum lycopersicum HOM05D005866 ORTHO05D007078 1.7e-31 140.6 266 38.3
Phvul.010G008600 Phaseolus vulgaris HOM05D005866 ORTHO05D007078 5.0e-31 139.0 258 42.6
TPR.G5230 Trifolium pratense HOM05D005866 ORTHO05D007078 8.6e-31 138.3 253 40.3
Peaxi162Scf00009g01923 Petunia axillaris HOM05D005866 ORTHO05D007078 1.2e-29 134.4 245 39.2
PSO339G5866 Papaver somniferum HOM05D005866 ORTHO05D007078 2.3e-28 130.2 197 43.1
AagrBONN_evm.TU.Sc2ySwM_117.2545 Anthoceros agrestis HOM05D005866 ORTHO05D007078 5.7e-27 125.6 224 37.1
Pp3c5_19930 Physcomitrium patens HOM05D005866 ORTHO05D007078 7.5e-27 125.2 235 37.0
ATR0618G104 Amborella trichopoda HOM05D005866 ORTHO05D007078 5.4e-25 119.0 144 47.9
Mapoly0004s0086 Marchantia polymorpha HOM05D005866 ORTHO05D007078 1.7e-23 114.0 218 35.3
SEGI_33363 Sequoiadendron giganteum HOM05D005866 ORTHO05D007078 2.3e-23 113.6 202 34.2
HanXRQChr10g0287001 Helianthus annuus HOM05D005866 ORTHO05D007078 1.5e-22 110.9 112 54.5
SMO143G0029 Selaginella moellendorffii HOM05D001879 ORTHO05D007648 6.8e-20 102.1 221 32.1
SEGI_17473 Sequoiadendron giganteum HOM05D005866 ORTHO05D007078 6.8e-20 102.1 181 33.1
Actinidia01118 Actinidia chinensis HOM05D005866 ORTHO05D007078 3.4e-19 99.8 82 64.6
Dinv37082 Davidia involucrata HOM05D005866 ORTHO05D007078 3.2e-17 93.2 111 50.5
ATR0618G115 Amborella trichopoda HOM05D005866 ORTHO05D007078 2.7e-16 90.1 117 47.9
Pp3c20_9600 Physcomitrium patens HOM05D005866 ORTHO05D007078 7.8e-16 88.6 214 31.8
SGA_v2.0_scaffold1443G53951 Striga asiatica HOM05D005866 ORTHO05D007078 6.6e-15 85.5 104 51.9
Pp3c23_6870 Physcomitrium patens HOM05D005866 ORTHO05D007078 4.7e-13 79.3 215 31.6
Mapoly0010s0127 Marchantia polymorpha HOM05D005866 ORTHO05D007078 1.1e-12 78.2 226 29.6
Actinidia01119 Actinidia chinensis HOM05D005866 ORTHO05D007078 7.5e-11 72.0 83 47.0
Lalb_Chr03g0043011 Lupinus albus HOM05D005866 ORTHO05D007078 8.3e-10 68.6 84 53.6
Ah.07g199780 Amaranthus hybridus HOM05D005866 ORTHO05D007078 4.1e-09 66.2 80 45.0
Nn2g13608 Nelumbo nucifera HOM05D005866 ORTHO05D007078 2.1e-08 63.9 63 57.1


User provided reference genes

Program Settings