Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN14G3373 Fragaria x ananassa HOM05D006315 ORTHO05D008052 9.6e-195 683.3 349 100.0
FAN14G1304 Fragaria x ananassa HOM05D006315 ORTHO05D008052 8.1e-194 680.2 349 99.7
FvH4_6g05840 Fragaria vesca HOM05D006315 ORTHO05D008052 3.3e-187 658.3 349 97.7
FAN05G4943 Fragaria x ananassa HOM05D006315 ORTHO05D008052 2.1e-181 639.0 349 95.1
FAN09G2245 Fragaria x ananassa HOM05D006315 ORTHO05D008052 2.7e-181 638.6 354 95.2
FAN02G1008 Fragaria x ananassa HOM05D006315 ORTHO05D008052 6.9e-177 624.0 354 92.7
FAN05G5779 Fragaria x ananassa HOM05D006315 ORTHO05D008052 1.5e-176 622.9 369 89.4
RcHm_v2.0_Chr3g0454751 Rosa chinensis HOM05D006315 ORTHO05D008052 1.8e-172 609.4 352 90.6
Prupe.6G325900 Prunus persica HOM05D006315 ORTHO05D008052 2.2e-151 539.3 357 79.3
MD12G1219300 Malus domestica HOM05D006315 ORTHO05D008052 1.5e-142 510.0 360 76.1
Manes.09G167100 Manihot esculenta HOM05D006315 ORTHO05D008052 3.2e-134 482.3 350 72.3
QL03p006996 Quercus lobata HOM05D006315 ORTHO05D008052 2.7e-133 479.2 359 71.9
CiPaw.07G017800 Carya illinoinensis HOM05D006315 ORTHO05D008052 6.1e-133 478.0 356 72.5
Cfa006589 Carpinus fangiana HOM05D006315 ORTHO05D008052 7.5e-131 471.1 360 70.8
Actinidia05703 Actinidia chinensis HOM05D006315 ORTHO05D008052 3.7e-130 468.8 357 70.3
RhsimUnG0225800 Rhododendron simsii HOM05D006315 ORTHO05D008052 2.4e-129 466.1 333 72.7
CSS0039769 Camellia sinensis var. sinensis HOM05D006315 ORTHO05D008052 5.4e-129 464.9 352 71.0
Gohir.D11G275200 Gossypium hirsutum HOM05D006315 ORTHO05D008052 7.0e-129 464.5 352 69.3
Gorai.007G297000 Gossypium raimondii HOM05D006315 ORTHO05D008052 7.0e-129 464.5 352 69.3
Thecc.05G303200 Theobroma cacao HOM05D006315 ORTHO05D008052 7.0e-129 464.5 353 68.8
Duzib128G1131 Durio zibethinus HOM05D006315 ORTHO05D008052 1.6e-128 463.4 344 70.3
COL.COLO4_13471 Corchorus olitorius HOM05D006315 ORTHO05D008052 2.0e-128 463.0 306 75.5
Dinv40287 Davidia involucrata HOM05D006315 ORTHO05D008052 3.5e-128 462.2 335 71.3
HanXRQChr02g0046151 Helianthus annuus HOM05D006315 ORTHO05D008052 2.2e-127 459.5 328 71.0
AUR62000828 Chenopodium quinoa HOM05D006315 ORTHO05D008052 1.1e-126 457.2 359 67.7
Ciclev10001688m.g Citrus clementina HOM05D006315 ORTHO05D008052 1.2e-125 453.8 360 68.6
Sabra13G0023200 Salix brachista HOM05D006315 ORTHO05D008052 2.8e-125 452.6 349 67.9
Potri.013G020800 Populus trichocarpa HOM05D006315 ORTHO05D008052 3.6e-125 452.2 334 69.5
GSVIVG01000051001 Vitis vinifera HOM05D006315 ORTHO05D008052 3.6e-125 452.2 360 68.6
PGR083G2010 Punica granatum HOM05D006315 ORTHO05D008052 6.1e-125 451.4 357 68.3
AUR62005146 Chenopodium quinoa HOM05D006315 ORTHO05D008052 1.8e-124 449.9 387 63.6
THA.LOC104818698 Tarenaya hassleriana HOM05D006315 ORTHO05D008052 2.3e-124 449.5 358 67.9
TWI36G1375 Tripterygium wilfordii HOM05D006315 ORTHO05D008052 1.2e-123 447.2 353 68.3
vmacro05019 Vaccinium macrocarpon HOM05D006315 ORTHO05D008052 1.5e-123 446.8 262 82.4
Cc02_g33440 Coffea canephora HOM05D006315 ORTHO05D008052 2.0e-123 446.4 338 68.6
A09p05350 Brassica napus HOM05D006315 ORTHO05D008052 4.4e-123 445.3 351 67.5
BraA09t36173Z Brassica rapa HOM05D006315 ORTHO05D008052 4.4e-123 445.3 351 67.5
CARHR186120 Cardamine hirsuta HOM05D006315 ORTHO05D008052 4.4e-123 445.3 350 68.0
Cpa.g.sc48.53 Carica papaya HOM05D006315 ORTHO05D008052 4.4e-123 445.3 355 67.9
Oeu020852.1 Olea europaea HOM05D006315 ORTHO05D008052 5.7e-123 444.9 348 69.0
Eucgr.B01969 Eucalyptus grandis HOM05D006315 ORTHO05D008052 7.5e-123 444.5 360 67.2
Lsat_1_v5_gn_9_86000 Lactuca sativa HOM05D006315 ORTHO05D008052 1.7e-122 443.4 356 66.3
Nn6g32180 Nelumbo nucifera HOM05D006315 ORTHO05D008052 1.7e-122 443.4 354 67.2
C09p05830 Brassica napus HOM05D006315 ORTHO05D008052 2.8e-122 442.6 352 67.3
BolC9t53510H Brassica oleracea HOM05D006315 ORTHO05D008052 2.8e-122 442.6 352 67.3
Thhalv10004542m.g Eutrema salsugineum HOM05D006315 ORTHO05D008052 2.8e-122 442.6 351 67.2
ECA236G1566 Erigeron canadensis HOM05D006315 ORTHO05D008052 4.9e-122 441.8 307 72.0
Sp2g20750 Schrenkiella parvula HOM05D006315 ORTHO05D008052 4.9e-122 441.8 352 66.8
TAR381G0108 Trochodendron aralioides HOM05D006315 ORTHO05D008052 4.9e-122 441.8 346 67.3
Sopen01g042560 Solanum pennellii HOM05D006315 ORTHO05D008052 8.3e-122 441.0 358 66.5
AL6G39450 Arabidopsis lyrata HOM05D006315 ORTHO05D008052 3.1e-121 439.1 350 66.3
CAN.G1034.11 Capsicum annuum HOM05D006315 ORTHO05D008052 3.1e-121 439.1 343 67.9
Carub.0006s2500 Capsella rubella HOM05D006315 ORTHO05D008052 5.4e-121 438.3 350 68.0
PSO675G8687 Papaver somniferum HOM05D006315 ORTHO05D008052 5.4e-121 438.3 360 66.4
Aa31LG11G9300 Aethionema arabicum HOM05D006315 ORTHO05D008052 7.0e-121 438.0 356 64.6
Aqoxy6G00442 Aquilegia oxysepala HOM05D006315 ORTHO05D008052 1.2e-120 437.2 364 65.7
Nitab4.5_0004395g0040 Nicotiana tabacum HOM05D006315 ORTHO05D008052 1.2e-120 437.2 353 66.3
Peaxi162Scf00037g00325 Petunia axillaris HOM05D006315 ORTHO05D008052 7.8e-120 434.5 351 66.7
PGSC0003DMG400018995 Solanum tuberosum HOM05D006315 ORTHO05D008052 1.3e-119 433.7 350 67.1
SalBow8G0023 Salvia bowleyana HOM05D006315 ORTHO05D008052 2.3e-119 433.0 300 72.7
ClCG02G015800 Citrullus lanatus HOM05D006315 ORTHO05D008052 6.6e-119 431.4 355 67.9
CsaV3_2G005300 Cucumis sativus L. HOM05D006315 ORTHO05D008052 4.3e-118 428.7 353 67.1
Glyma.10G154300 Glycine max HOM05D006315 ORTHO05D008052 8.0e-117 424.5 353 67.4
AT5G27560 Arabidopsis thaliana HOM05D006315 ORTHO05D008052 1.0e-116 424.1 352 65.6
Lalb_Chr02g0148251 Lupinus albus HOM05D006315 ORTHO05D008052 1.0e-116 424.1 344 66.0
Sc06g0003310 Simmondsia chinensis HOM05D006315 ORTHO05D008052 1.2e-115 420.6 360 65.6
Ah.06g189370 Amaranthus hybridus HOM05D006315 ORTHO05D008052 1.5e-115 420.2 352 65.3
arahy.Tifrunner.gnm1.ann1.9IE074 Arachis hypogaea HOM05D006315 ORTHO05D008052 2.0e-115 419.9 354 65.8
VMungo0720G2927 Vigna mungo HOM05D006315 ORTHO05D008052 3.4e-115 419.1 355 65.1
DCAR_022164 Daucus carota HOM05D006315 ORTHO05D008052 1.7e-114 416.8 306 69.0
unitig_37.g12631 Utricularia gibba HOM05D006315 ORTHO05D008052 1.7e-114 416.8 300 70.7
Migut.B01035 Erythranthe guttata HOM05D006315 ORTHO05D008052 2.2e-114 416.4 349 65.0
TPR.G6112 Trifolium pratense HOM05D006315 ORTHO05D008052 2.2e-114 416.4 317 69.1
ATR1120G073 Amborella trichopoda HOM05D006315 ORTHO05D008052 2.9e-114 416.0 265 77.4
Hund07070 Selenicereus undatus HOM05D006315 ORTHO05D008052 6.4e-114 414.8 338 65.1
MBI01_g44539_MAGBIO Magnolia biondii HOM05D006315 ORTHO05D008052 8.3e-114 414.5 262 78.2
MSTRG.16964 Avicennia marina HOM05D006315 ORTHO05D008052 1.8e-113 413.3 352 64.2
Phvul.007G180000 Phaseolus vulgaris HOM05D006315 ORTHO05D008052 1.8e-113 413.3 356 64.9
Glyma.20G234000 Glycine max HOM05D006315 ORTHO05D008052 2.4e-113 412.9 354 66.4
Psat6g151200 Pisum sativum HOM05D006315 ORTHO05D008052 5.4e-113 411.8 342 64.6
PSO541G4223 Papaver somniferum HOM05D006315 ORTHO05D008052 2.0e-112 409.8 339 65.5
Ca_10111_v3 Cicer arietinum L. HOM05D006315 ORTHO05D008052 2.7e-112 409.5 303 69.3
Lj5g0002172 Lotus japonicus HOM05D006315 ORTHO05D008052 2.7e-112 409.5 351 63.5
Medtr1g082900 Medicago truncatula HOM05D006315 ORTHO05D008052 1.0e-111 407.5 317 68.1
CDE06G2073 Ceratophyllum demersum HOM05D006315 ORTHO05D008052 8.6e-111 404.4 301 68.1
Sed0013855 Sechium edule HOM05D006315 ORTHO05D008052 8.6e-111 404.4 339 65.2
MELO3C004257.2 Cucumis melo HOM05D006315 ORTHO05D008052 7.5e-107 391.3 319 67.4
Gohir.A11G265000 Gossypium hirsutum HOM05D006315 ORTHO05D008052 1.6e-104 383.6 236 78.4
SGA_v2.0_scaffold13G06358 Striga asiatica HOM05D006315 ORTHO05D008052 3.5e-104 382.5 313 65.2
Atru.chr2.406 Acer truncatum HOM05D006315 ORTHO05D008052 7.3e-102 374.8 362 58.6
Solyc01g098990.4 Solanum lycopersicum HOM05D006315 ORTHO05D008052 6.2e-101 371.7 346 60.1
Haze_04196 Corylus avellana HOM05D006315 ORTHO05D008052 5.2e-100 368.6 309 65.7
SEGI_29864 Sequoiadendron giganteum HOM05D006315 ORTHO05D008052 8.9e-92 341.3 351 54.4
EL10Ac4g09351 Beta vulgaris HOM05D006315 ORTHO05D008052 9.6e-86 321.2 325 56.3
arahy.Tifrunner.gnm1.ann1.SMKB8G Arachis hypogaea HOM05D006315 ORTHO05D008052 4.4e-83 312.4 360 53.6
Zm00001eb377150 Zea mays HOM05D006315 ORTHO05D008052 1.9e-81 307.0 262 60.3
AagrBONN_evm.TU.Sc2ySwM_368.1535 Anthoceros agrestis HOM05D006315 ORTHO05D008052 1.0e-79 301.2 298 51.7
Mapoly0046s0092 Marchantia polymorpha HOM05D006315 ORTHO05D008052 4.0e-76 289.3 362 45.9
Lj5A533G15 Lonicera japonica HOM05D006315 ORTHO05D008052 6.9e-76 288.5 170 82.9
Nitab4.5_0000137g0320 Nicotiana tabacum HOM05D006315 ORTHO05D008052 6.4e-74 282.0 173 75.1
Pp3c1_23410 Physcomitrium patens HOM05D006315 ORTHO05D008052 1.6e-69 267.3 304 47.0
Eucgr.B01970 Eucalyptus grandis HOM05D006315 ORTHO05D008052 5.3e-68 262.3 187 65.8
Eucgr.B01875 Eucalyptus grandis HOM05D006315 ORTHO05D008052 4.2e-65 252.7 144 79.9
SMO116G0320 Selaginella moellendorffii HOM05D006315 ORTHO05D008052 3.4e-59 233.0 231 48.5
Actinidia23634 Actinidia chinensis HOM05D006315 ORTHO05D008052 5.7e-54 215.7 139 78.4
Lj5C470G0 Lonicera japonica HOM05D006315 ORTHO05D008052 4.1e-52 209.5 161 68.3
Lj5C532G5 Lonicera japonica HOM05D006315 ORTHO05D008052 4.1e-52 209.5 161 68.3
HPP92_002820 Vanilla planifolia HOM05D006315 ORTHO05D008052 6.9e-52 208.8 183 63.9
HPP92_002878 Vanilla planifolia HOM05D006315 ORTHO05D008052 4.6e-48 196.1 139 71.2
Cre17.g739550 Chlamydomonas reinhardtii HOM05D006315 ORTHO05D008052 3.6e-40 169.9 370 31.6
MCO15G525 Micromonas commoda HOM05D006315 ORTHO05D008052 7.9e-40 168.7 348 33.9
PRCOL_00006277 Prasinoderma coloniale HOM05D006315 ORTHO05D008052 7.2e-33 145.6 238 37.8
Hma1.2p1_0928F.1_g237790 Hydrangea macrophylla HOM05D006315 ORTHO05D008052 2.1e-32 144.1 156 57.1
EL10As4g23462 Beta vulgaris HOM05D006315 ORTHO05D008052 2.6e-30 137.1 114 64.9
Lj5A532G12 Lonicera japonica HOM05D006315 ORTHO05D008052 8.0e-24 115.5 208 39.4
Lj5P531T4 Lonicera japonica HOM05D006315 ORTHO05D008052 2.3e-23 114.0 83 62.7
Aa31LG11G9280 Aethionema arabicum HOM05D006315 ORTHO05D059511 1.3e-21 108.2 94 59.6
Lj5P469T8 Lonicera japonica HOM05D006315 ORTHO05D008052 8.2e-21 105.5 53 88.7
arahy.Tifrunner.gnm1.ann1.T3AGRQ Arachis hypogaea HOM05D006315 ORTHO05D008052 4.7e-16 89.7 65 63.1
Lj5A470G9 Lonicera japonica HOM05D006315 ORTHO05D008052 1.3e-13 81.6 126 40.5
BolC7t42010H Brassica oleracea HOM05D004896 ORTHO05D028223 3.7e-13 80.1 146 42.5
Lj5A532G11 Lonicera japonica HOM05D006315 ORTHO05D008052 3.1e-12 77.0 126 38.9
EL10Ac4g09000 Beta vulgaris HOM05D006315 ORTHO05D008052 4.5e-11 73.2 39 82.1
C09p41080 Brassica napus HOM05D004896 ORTHO05D028223 8.0e-08 62.4 39 69.2
BolC9t56987H Brassica oleracea HOM05D004896 ORTHO05D028223 8.0e-08 62.4 39 69.2


User provided reference genes

Program Settings