Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN14G3271 Fragaria x ananassa HOM05D001380 ORTHO05D001912 2.8e-32 141.4 73 100.0
FvH4_6g00220 Fragaria vesca HOM05D001380 ORTHO05D001912 4.1e-31 137.5 71 98.6
FAN09G1235 Fragaria x ananassa HOM05D001380 ORTHO05D001912 4.1e-31 137.5 71 98.6
FAN05G2695 Fragaria x ananassa HOM05D001380 ORTHO05D001912 4.5e-30 134.0 71 95.8
FAN02G2414 Fragaria x ananassa HOM05D001380 ORTHO05D001912 2.9e-29 131.3 71 94.4
RcHm_v2.0_Chr3g0447591 Rosa chinensis HOM05D001380 ORTHO05D001912 3.7e-24 114.4 70 84.3
Prupe.6G363300 Prunus persica HOM05D001380 ORTHO05D001912 2.3e-18 95.1 74 70.3
CANSAT54G0828 Cannabis sativa HOM05D001380 ORTHO05D001912 9.8e-17 89.7 70 67.1
Cfa006242 Carpinus fangiana HOM05D001380 ORTHO05D001912 2.2e-16 88.6 70 70.0
CiPaw.07G082300 Carya illinoinensis HOM05D001380 ORTHO05D001912 2.8e-16 88.2 72 66.7
Cpa.g.c42760 Carica papaya HOM05D001380 ORTHO05D001912 6.3e-16 87.0 74 63.5
MD04G1247100 Malus domestica HOM05D001380 ORTHO05D001912 8.3e-16 86.7 74 63.5
AUR62000288 Chenopodium quinoa HOM05D001380 ORTHO05D001912 2.4e-15 85.1 71 59.2
AUR62006636 Chenopodium quinoa HOM05D001380 ORTHO05D001912 2.4e-15 85.1 71 59.2
MD12G1263100 Malus domestica HOM05D001380 ORTHO05D001912 2.4e-15 85.1 74 62.2
CiPaw.08G114100 Carya illinoinensis HOM05D001380 ORTHO05D001912 3.2e-15 84.7 70 65.7
EL10Ac4g10007 Beta vulgaris HOM05D001380 ORTHO05D001912 5.4e-15 84.0 75 56.0
COL.COLO4_04126 Corchorus olitorius HOM05D001380 ORTHO05D001912 7.0e-15 83.6 72 62.5
Hund21915 Selenicereus undatus HOM05D001380 ORTHO05D001912 1.2e-14 82.8 74 60.8
Haze_04576 Corylus avellana HOM05D001380 ORTHO05D001912 2.7e-14 81.6 64 70.3
Rhsim05G0165600 Rhododendron simsii HOM05D001380 ORTHO05D001912 2.7e-14 81.6 72 58.3
CiPaw.16G059500 Carya illinoinensis HOM05D001380 ORTHO05D001912 5.9e-14 80.5 72 62.5
Cc09_g03940 Coffea canephora HOM05D001380 ORTHO05D001912 7.8e-14 80.1 73 60.3
HPP92_001012 Vanilla planifolia HOM05D001380 ORTHO05D001912 7.8e-14 80.1 73 58.9
Hund07365 Selenicereus undatus HOM05D001380 ORTHO05D001912 1.0e-13 79.7 71 66.2
Atru.chr12.1721 Acer truncatum HOM05D001380 ORTHO05D001912 1.3e-13 79.3 77 58.4
Eucgr.B01464 Eucalyptus grandis HOM05D001380 ORTHO05D001912 1.3e-13 79.3 69 59.4
GSVIVG01019059001 Vitis vinifera HOM05D001380 ORTHO05D001912 1.3e-13 79.3 70 62.9
PGR119G1928 Punica granatum HOM05D001380 ORTHO05D001912 1.7e-13 79.0 72 59.7
ClCG03G011640 Citrullus lanatus HOM05D001380 ORTHO05D001912 2.9e-13 78.2 70 60.0
Manes.13G003300 Manihot esculenta HOM05D001380 ORTHO05D001912 2.9e-13 78.2 72 58.3
Ah.06g195350 Amaranthus hybridus HOM05D001380 ORTHO05D001912 5.0e-13 77.4 74 55.4
Hma1.2p1_0831F.1_g225410 Hydrangea macrophylla HOM05D001380 ORTHO05D001912 5.0e-13 77.4 72 56.9
THA.LOC104821933 Tarenaya hassleriana HOM05D001380 ORTHO05D001912 5.0e-13 77.4 73 58.9
Ah.04g159120 Amaranthus hybridus HOM05D001380 ORTHO05D001912 6.6e-13 77.0 74 54.1
Potri.019G055300 Populus trichocarpa HOM05D001380 ORTHO05D001912 6.6e-13 77.0 73 60.3
Sc16g0010490 Simmondsia chinensis HOM05D001380 ORTHO05D001912 6.6e-13 77.0 72 58.3
Peaxi162Scf01286g00120 Petunia axillaris HOM05D001380 ORTHO05D001912 8.6e-13 76.6 69 58.0
Sabra19G0064500 Salix brachista HOM05D001380 ORTHO05D001912 8.6e-13 76.6 75 60.0
Sed0027971 Sechium edule HOM05D001380 ORTHO05D001912 8.6e-13 76.6 70 57.1
Gorai.013G111400 Gossypium raimondii HOM05D001380 ORTHO05D001912 1.1e-12 76.3 77 55.8
vmacro19573 Vaccinium macrocarpon HOM05D001380 ORTHO05D001912 1.1e-12 76.3 72 58.3
Dinv21371 Davidia involucrata HOM05D001380 ORTHO05D001912 1.5e-12 75.9 69 58.0
Gohir.A01G073100 Gossypium hirsutum HOM05D001380 ORTHO05D001912 1.5e-12 75.9 77 55.8
Lsat_1_v5_gn_0_14661 Lactuca sativa HOM05D001380 ORTHO05D001912 1.5e-12 75.9 69 60.9
AL2G20410 Arabidopsis lyrata HOM05D001380 ORTHO05D001912 1.9e-12 75.5 69 59.4
AT1G65290 Arabidopsis thaliana HOM05D001380 ORTHO05D001912 1.9e-12 75.5 69 60.9
Carub.0002s1097 Capsella rubella HOM05D001380 ORTHO05D001912 1.9e-12 75.5 69 59.4
Gohir.D01G059700 Gossypium hirsutum HOM05D001380 ORTHO05D001912 1.9e-12 75.5 77 55.8
Gorai.002G080900 Gossypium raimondii HOM05D001380 ORTHO05D001912 1.9e-12 75.5 77 55.8
Gohir.D13G105200 Gossypium hirsutum HOM05D001380 ORTHO05D001912 2.5e-12 75.1 77 54.5
HanXRQChr16g0511851 Helianthus annuus HOM05D001380 ORTHO05D001912 2.5e-12 75.1 73 56.2
Nitab4.5_0000080g0310 Nicotiana tabacum HOM05D001380 ORTHO05D001912 2.5e-12 75.1 70 57.1
TWI36G0161 Tripterygium wilfordii HOM05D001380 ORTHO05D001912 2.5e-12 75.1 78 55.1
TWI36G0975 Tripterygium wilfordii HOM05D001380 ORTHO05D001912 2.5e-12 75.1 78 55.1
Thecc.05G185900 Theobroma cacao HOM05D001380 ORTHO05D001912 4.3e-12 74.3 75 56.0
TAR365G0103 Trochodendron aralioides HOM05D001380 ORTHO05D001912 4.3e-12 74.3 70 61.4
AL7G45250 Arabidopsis lyrata HOM05D001380 ORTHO05D001912 7.3e-12 73.6 69 55.1
CARHR056960 Cardamine hirsuta HOM05D001380 ORTHO05D001912 7.3e-12 73.6 69 59.4
Sed0021535 Sechium edule HOM05D001380 ORTHO05D001912 7.3e-12 73.6 70 55.7
TWI18G0974 Tripterygium wilfordii HOM05D001380 ORTHO05D001912 7.3e-12 73.6 76 57.9
ECA232G2842 Erigeron canadensis HOM05D001380 ORTHO05D001912 9.5e-12 73.2 71 53.5
C06p38980 Brassica napus HOM05D001380 ORTHO05D001912 1.2e-11 72.8 69 55.1
BolC6t38990H Brassica oleracea HOM05D001380 ORTHO05D001912 1.2e-11 72.8 69 55.1
Manes.12G003400 Manihot esculenta HOM05D001380 ORTHO05D001912 1.2e-11 72.8 72 55.6
THA.LOC104823810 Tarenaya hassleriana HOM05D001380 ORTHO05D001912 1.2e-11 72.8 72 55.6
DCAR_006478 Daucus carota HOM05D001380 ORTHO05D001912 1.6e-11 72.4 69 52.2
Sc06g0005000 Simmondsia chinensis HOM05D001380 ORTHO05D001912 1.6e-11 72.4 70 55.7
HPP92_011263 Vanilla planifolia HOM05D001380 ORTHO05D001912 1.6e-11 72.4 72 56.9
BcaB05g24105 Brassica carinata HOM05D001380 ORTHO05D001912 2.1e-11 72.0 77 53.2
A02p13160 Brassica napus HOM05D001380 ORTHO05D001912 2.1e-11 72.0 72 52.8
BraA02t06372Z Brassica rapa HOM05D001380 ORTHO05D001912 2.1e-11 72.0 72 52.8
BraA07t30904Z Brassica rapa HOM05D001380 ORTHO05D001912 2.1e-11 72.0 69 53.6
Dinv29082 Davidia involucrata HOM05D001380 ORTHO05D001912 2.1e-11 72.0 70 57.1
Duzib177G0090 Durio zibethinus HOM05D001380 ORTHO05D001912 2.1e-11 72.0 75 54.7
QL01p048084 Quercus lobata HOM05D001380 ORTHO05D001912 2.1e-11 72.0 72 61.1
A07p32770 Brassica napus HOM05D001380 ORTHO05D001912 2.8e-11 71.6 69 59.4
Sabra13G0078700 Salix brachista HOM05D001380 ORTHO05D001912 2.8e-11 71.6 76 56.6
TAR362G0024 Trochodendron aralioides HOM05D001380 ORTHO05D001912 3.6e-11 71.2 69 60.9
Nitab4.5_0001449g0060 Nicotiana tabacum HOM05D001380 ORTHO05D001912 4.7e-11 70.9 70 55.7
Aqoxy2G00288 Aquilegia oxysepala HOM05D001380 ORTHO05D001912 6.1e-11 70.5 77 53.2
MSTRG.337 Avicennia marina HOM05D001380 ORTHO05D001912 6.1e-11 70.5 71 56.3
BcaNung05536 Brassica carinata HOM05D001380 ORTHO05D001912 6.1e-11 70.5 69 53.6
Gohir.A01G073200 Gossypium hirsutum HOM05D001380 ORTHO05D001912 6.1e-11 70.5 77 55.8
Gorai.002G081000 Gossypium raimondii HOM05D001380 ORTHO05D001912 6.1e-11 70.5 77 55.8
HPP92_011340 Vanilla planifolia HOM05D001380 ORTHO05D001912 6.1e-11 70.5 71 54.9
Duzib128G0783 Durio zibethinus HOM05D001380 ORTHO05D001912 8.0e-11 70.1 75 54.7
Nitab4.5_0001663g0170 Nicotiana tabacum HOM05D001380 ORTHO05D001912 8.0e-11 70.1 70 52.9
BcaC03g14693 Brassica carinata HOM05D001380 ORTHO05D001912 1.0e-10 69.7 72 56.9
C02p21280 Brassica napus HOM05D001380 ORTHO05D001912 1.0e-10 69.7 72 56.9
BolC2t08269H Brassica oleracea HOM05D001380 ORTHO05D001912 1.0e-10 69.7 72 56.9
Potri.013G084500 Populus trichocarpa HOM05D001380 ORTHO05D001912 1.0e-10 69.7 75 56.0
CDE04G0718 Ceratophyllum demersum HOM05D001380 ORTHO05D001912 1.4e-10 69.3 69 52.2
Duzib177G0597 Durio zibethinus HOM05D001380 ORTHO05D001912 1.4e-10 69.3 75 53.3
Aa31LG9G17830 Aethionema arabicum HOM05D001380 ORTHO05D001912 1.8e-10 68.9 72 52.8
BcaB06g27022 Brassica carinata HOM05D001380 ORTHO05D001912 1.8e-10 68.9 73 50.7
Gohir.D01G059800 Gossypium hirsutum HOM05D001380 ORTHO05D001912 1.8e-10 68.9 77 55.8
SGA_v2.0_scaffold62G21487 Striga asiatica HOM05D001380 ORTHO05D001912 1.8e-10 68.9 70 52.9
BcaC02g09518 Brassica carinata HOM05D001380 ORTHO05D001912 2.3e-10 68.6 73 50.7
C04p43660 Brassica napus HOM05D001380 ORTHO05D001912 2.3e-10 68.6 73 50.7
BolC4t25947H Brassica oleracea HOM05D001380 ORTHO05D001912 2.3e-10 68.6 73 50.7
Ca_08005_v3 Cicer arietinum L. HOM05D001380 ORTHO05D001912 2.3e-10 68.6 73 57.5
Nitab4.5_0000582g0090 Nicotiana tabacum HOM05D001380 ORTHO05D001912 2.3e-10 68.6 69 50.7
Nitab4.5_0004719g0080 Nicotiana tabacum HOM05D001380 ORTHO05D001912 2.3e-10 68.6 69 50.7
Sp5g19950 Schrenkiella parvula HOM05D001380 ORTHO05D001912 2.3e-10 68.6 72 54.2
Lj1g0015224 Lotus japonicus HOM05D001380 ORTHO05D001912 3.1e-10 68.2 64 56.2
Thhalv10005122m.g Eutrema salsugineum HOM05D001380 ORTHO05D001912 4.0e-10 67.8 74 51.4
Glyma.09G248500 Glycine max HOM05D001380 ORTHO05D001912 4.0e-10 67.8 73 56.2
Peaxi162Scf40203g00005 Petunia axillaris HOM05D001380 ORTHO05D001912 4.0e-10 67.8 69 53.6
MSTRG.27405 Avicennia marina HOM05D001380 ORTHO05D001912 5.2e-10 67.4 69 50.7
A04p10180 Brassica napus HOM05D001380 ORTHO05D001912 5.2e-10 67.4 73 50.7
BraA04t16682Z Brassica rapa HOM05D001380 ORTHO05D001912 5.2e-10 67.4 73 49.3
SalBow6G4401 Salvia bowleyana HOM05D001380 ORTHO05D001912 5.2e-10 67.4 71 53.5
Migut.F01858 Erythranthe guttata HOM05D001380 ORTHO05D001912 6.8e-10 67.0 71 50.7
MBI15_g22769_MAGBIO Magnolia biondii HOM05D001380 ORTHO05D001912 6.8e-10 67.0 70 51.4
Sp7g05890 Schrenkiella parvula HOM05D001380 ORTHO05D001912 6.8e-10 67.0 71 50.7
Solyc04g015370.3 Solanum lycopersicum HOM05D001380 ORTHO05D001912 6.8e-10 67.0 69 52.2
Sopen04g007440 Solanum pennellii HOM05D001380 ORTHO05D001912 6.8e-10 67.0 69 52.2
PGSC0003DMG400027265 Solanum tuberosum HOM05D001380 ORTHO05D001912 6.8e-10 67.0 69 52.2
MSTRG.8202 Avicennia marina HOM05D001380 ORTHO05D001912 8.9e-10 66.6 69 55.1
MBI14_g24978_MAGBIO Magnolia biondii HOM05D001380 ORTHO05D001912 1.2e-09 66.2 77 50.6
arahy.Tifrunner.gnm1.ann1.WV5AXR Arachis hypogaea HOM05D001380 ORTHO05D001912 1.5e-09 65.9 74 54.1
CDE07G1372 Ceratophyllum demersum HOM05D001380 ORTHO05D001912 1.5e-09 65.9 70 54.3
Migut.F02101 Erythranthe guttata HOM05D001380 ORTHO05D001912 1.5e-09 65.9 69 52.2
PSO339G5679 Papaver somniferum HOM05D001380 ORTHO05D001912 1.5e-09 65.9 70 54.3
PSO384G3260 Papaver somniferum HOM05D001380 ORTHO05D001912 1.5e-09 65.9 69 55.1
SGA_v2.0_scaffold13G06355 Striga asiatica HOM05D001380 ORTHO05D001912 2.0e-09 65.5 70 50.0
Aa31LG2G2400 Aethionema arabicum HOM05D001380 ORTHO05D001912 2.6e-09 65.1 77 45.5
ATR0721G027 Amborella trichopoda HOM05D001380 ORTHO05D001912 2.6e-09 65.1 71 47.9
arahy.Tifrunner.gnm1.ann1.XR6FWD Arachis hypogaea HOM05D001380 ORTHO05D001912 3.4e-09 64.7 74 54.1
Solyc05g056240.3 Solanum lycopersicum HOM05D001380 ORTHO05D001912 3.4e-09 64.7 72 52.8
PGSC0003DMG400023456 Solanum tuberosum HOM05D001380 ORTHO05D001912 3.4e-09 64.7 72 52.8
Glyma.18G244300 Glycine max HOM05D001380 ORTHO05D001912 4.4e-09 64.3 73 56.2
Lalb_Chr01g0020601 Lupinus albus HOM05D001380 ORTHO05D001912 4.4e-09 64.3 74 55.4
Phvul.008G052400 Phaseolus vulgaris HOM05D001380 ORTHO05D001912 4.4e-09 64.3 73 53.4
Sopen05g034630 Solanum pennellii HOM05D001380 ORTHO05D001912 4.4e-09 64.3 72 52.8
PGSC0003DMG400024963 Solanum tuberosum HOM05D001380 ORTHO05D001912 4.4e-09 64.3 72 51.4
VMungo1383G0196 Vigna mungo HOM05D001380 ORTHO05D001912 4.4e-09 64.3 73 53.4
Thhalv10019314m.g Eutrema salsugineum HOM05D001380 ORTHO05D001912 5.8e-09 63.9 71 50.7
Nn2g12551 Nelumbo nucifera HOM05D001380 ORTHO05D001912 5.8e-09 63.9 65 60.0
SalBow1G5265 Salvia bowleyana HOM05D001380 ORTHO05D001912 5.8e-09 63.9 69 49.3
Lalb_Chr03g0038091 Lupinus albus HOM05D001380 ORTHO05D001912 7.5e-09 63.5 64 56.2
Psat3g103240 Pisum sativum HOM05D001380 ORTHO05D001912 7.5e-09 63.5 73 54.8
TPR.G32003 Trifolium pratense HOM05D001380 ORTHO05D001912 7.5e-09 63.5 73 54.8
Zm00001eb286820 Zea mays HOM05D001380 ORTHO05D001912 7.5e-09 63.5 71 49.3
Zm00001eb400850 Zea mays HOM05D001380 ORTHO05D001912 7.5e-09 63.5 75 52.0
Medtr7g080390 Medicago truncatula HOM05D001380 ORTHO05D001912 9.8e-09 63.2 73 53.4
Oeu009726.2 Olea europaea HOM05D001380 ORTHO05D001912 1.3e-08 62.8 71 47.9
unitig_26.g9575 Utricularia gibba HOM05D001380 ORTHO05D001912 1.7e-08 62.4 69 49.3
Thhalv10009290m.g Eutrema salsugineum HOM05D001380 ORTHO05D001912 2.2e-08 62.0 71 47.9
Os05g0377000 Oryza sativa ssp. japonica HOM05D001380 ORTHO05D001912 6.4e-08 60.5 71 46.5
AagrBONN_evm.TU.Sc2ySwM_344.4008 Anthoceros agrestis HOM05D001380 ORTHO05D001912 2.4e-07 58.5 73 46.6
Os03g0352800 Oryza sativa ssp. japonica HOM05D001380 ORTHO05D001912 7.0e-07 57.0 77 44.2
Ciclev10013736m.g Citrus clementina HOM05D001380 ORTHO05D001912 1.6e-06 55.8 32 78.1


User provided reference genes

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