Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN14G3231 Fragaria x ananassa HOM05D006979 ORTHO05D008857 8.4e-85 317.0 162 100.0
FvH4_6g34590 Fragaria vesca HOM05D006979 ORTHO05D008857 1.6e-83 312.8 162 98.1
FAN09G4734 Fragaria x ananassa HOM05D006979 ORTHO05D008857 1.6e-83 312.8 162 98.1
RcHm_v2.0_Chr2g0145111 Rosa chinensis HOM05D006979 ORTHO05D008857 1.4e-79 299.7 163 94.5
Prupe.3G042700 Prunus persica HOM05D006979 ORTHO05D008857 8.1e-72 273.9 161 83.9
MD09G1184500 Malus domestica HOM05D006979 ORTHO05D008857 2.9e-69 265.4 161 80.1
FAN05G0457 Fragaria x ananassa HOM05D006979 ORTHO05D008857 3.5e-67 258.5 139 95.0
CiPaw.01G219600 Carya illinoinensis HOM05D006979 ORTHO05D008857 1.1e-63 246.9 161 73.3
Cfa003539 Carpinus fangiana HOM05D006979 ORTHO05D008857 2.0e-62 242.7 161 74.5
CANSAT56G2284 Cannabis sativa HOM05D006979 ORTHO05D008857 2.6e-62 242.3 161 72.0
Potri.003G063800 Populus trichocarpa HOM05D006979 ORTHO05D008857 1.3e-61 240.0 161 72.7
Manes.11G021300 Manihot esculenta HOM05D006979 ORTHO05D008857 8.4e-61 237.3 161 71.4
Sabra03G0037400 Salix brachista HOM05D006979 ORTHO05D008857 8.4e-61 237.3 161 69.6
Atru.chr1.3953 Acer truncatum HOM05D006979 ORTHO05D008857 1.1e-60 236.9 160 70.0
Atru.chr1.3954 Acer truncatum HOM05D006979 ORTHO05D008857 1.4e-60 236.5 160 70.0
Ciclev10026147m.g Citrus clementina HOM05D006979 ORTHO05D008857 1.4e-60 236.5 161 68.9
Lj3g0022239 Lotus japonicus HOM05D006979 ORTHO05D008857 3.5e-59 231.9 161 67.1
Actinidia32181 Actinidia chinensis HOM05D006979 ORTHO05D008857 4.6e-59 231.5 158 72.2
Rhsim08G0237900 Rhododendron simsii HOM05D006979 ORTHO05D008857 4.6e-59 231.5 158 69.0
Sc08g0005680 Simmondsia chinensis HOM05D006979 ORTHO05D008857 6.0e-59 231.1 162 69.1
Lj9A522T69 Lonicera japonica HOM05D006979 ORTHO05D008857 1.0e-58 230.3 167 67.1
Psat4g183680 Pisum sativum HOM05D006979 ORTHO05D008857 1.0e-58 230.3 161 68.3
Glyma.16G005300 Glycine max HOM05D006979 ORTHO05D008857 2.3e-58 229.2 161 67.1
TAR383G0452 Trochodendron aralioides HOM05D006979 ORTHO05D008857 2.3e-58 229.2 161 66.5
COL.COLO4_30769 Corchorus olitorius HOM05D006979 ORTHO05D008857 3.0e-58 228.8 161 67.7
GSVIVG01016774001 Vitis vinifera HOM05D006979 ORTHO05D008857 3.9e-58 228.4 160 69.4
vmacro15023 Vaccinium macrocarpon HOM05D006979 ORTHO05D008857 5.1e-58 228.0 158 67.7
Glyma.07G036000 Glycine max HOM05D006979 ORTHO05D008857 6.7e-58 227.6 161 66.5
Dinv04035 Davidia involucrata HOM05D006979 ORTHO05D008857 8.7e-58 227.3 161 68.9
Medtr8g019510 Medicago truncatula HOM05D006979 ORTHO05D008857 8.7e-58 227.3 161 65.8
Thecc.06G118900 Theobroma cacao HOM05D006979 ORTHO05D008857 8.7e-58 227.3 161 66.5
TWI31G0112 Tripterygium wilfordii HOM05D006979 ORTHO05D008857 1.1e-57 226.9 159 67.3
Phvul.010G133500 Phaseolus vulgaris HOM05D006979 ORTHO05D008857 1.5e-57 226.5 161 65.2
AUR62001490 Chenopodium quinoa HOM05D006979 ORTHO05D008857 1.9e-57 226.1 160 68.1
Ca_05018_v3 Cicer arietinum L. HOM05D006979 ORTHO05D008857 2.5e-57 225.7 161 66.5
QL05p008051 Quercus lobata HOM05D006979 ORTHO05D008857 3.3e-57 225.3 211 55.5
TPR.G16442 Trifolium pratense HOM05D006979 ORTHO05D008857 5.7e-57 224.6 161 65.8
VMungo0331G0985 Vigna mungo HOM05D006979 ORTHO05D008857 5.7e-57 224.6 158 66.5
Cpa.g.sc25.110 Carica papaya HOM05D006979 ORTHO05D008857 7.4e-57 224.2 157 71.3
AUR62009880 Chenopodium quinoa HOM05D006979 ORTHO05D008857 7.4e-57 224.2 160 68.8
CSS0018635 Camellia sinensis var. sinensis HOM05D006979 ORTHO05D008857 6.3e-56 221.1 158 67.7
CSS0026622 Camellia sinensis var. sinensis HOM05D006979 ORTHO05D008857 6.3e-56 221.1 158 67.7
Gohir.D05G142800 Gossypium hirsutum HOM05D006979 ORTHO05D008857 6.3e-56 221.1 161 63.4
Gorai.009G146700 Gossypium raimondii HOM05D006979 ORTHO05D008857 6.3e-56 221.1 161 63.4
Sed0019772 Sechium edule HOM05D006979 ORTHO05D008857 8.2e-56 220.7 158 65.8
Lalb_Chr04g0263421 Lupinus albus HOM05D006979 ORTHO05D008857 1.1e-55 220.3 162 66.0
Nitab4.5_0001199g0130 Nicotiana tabacum HOM05D006979 ORTHO05D008857 1.4e-55 219.9 158 64.6
Duzib235G1224 Durio zibethinus HOM05D006979 ORTHO05D008857 1.8e-55 219.5 161 64.6
Eucgr.F03173 Eucalyptus grandis HOM05D006979 ORTHO05D008857 4.1e-55 218.4 161 65.2
Nitab4.5_0000189g0250 Nicotiana tabacum HOM05D006979 ORTHO05D008857 5.3e-55 218.0 158 64.6
Migut.D00941 Erythranthe guttata HOM05D006979 ORTHO05D008857 1.5e-54 216.5 161 62.7
Peaxi162Scf00177g00513 Petunia axillaris HOM05D006979 ORTHO05D008857 1.0e-53 213.8 157 63.7
SGA_v2.0_scaffold4G02061 Striga asiatica HOM05D006979 ORTHO05D008857 1.0e-53 213.8 161 62.7
Oeu015481.1 Olea europaea HOM05D006979 ORTHO05D008857 1.3e-53 213.4 161 64.6
CsaV3_7G034520 Cucumis sativus L. HOM05D006979 ORTHO05D008857 5.0e-53 211.5 158 63.3
Lsat_1_v5_gn_5_135940 Lactuca sativa HOM05D006979 ORTHO05D008857 1.9e-52 209.5 162 60.5
CAN.G1368.7 Capsicum annuum HOM05D006979 ORTHO05D008857 4.2e-52 208.4 158 61.4
arahy.Tifrunner.gnm1.ann1.4E7AR5 Arachis hypogaea HOM05D006979 ORTHO05D008857 5.5e-52 208.0 160 62.5
SalBow7G2243 Salvia bowleyana HOM05D006979 ORTHO05D008857 5.5e-52 208.0 161 62.1
arahy.Tifrunner.gnm1.ann1.IV001U Arachis hypogaea HOM05D006979 ORTHO05D008857 7.2e-52 207.6 160 62.5
PGSC0003DMG400011606 Solanum tuberosum HOM05D006979 ORTHO05D008857 7.2e-52 207.6 158 62.0
ECA234G1570 Erigeron canadensis HOM05D006979 ORTHO05D008857 9.3e-52 207.2 158 60.1
Hund05741 Selenicereus undatus HOM05D006979 ORTHO05D008857 2.1e-51 206.1 214 53.3
Solyc12g049280.3 Solanum lycopersicum HOM05D006979 ORTHO05D008857 1.3e-50 203.4 157 61.1
THA.LOC104813956 Tarenaya hassleriana HOM05D006979 ORTHO05D008857 2.3e-50 202.6 159 62.3
Haze_16022 Corylus avellana HOM05D006979 ORTHO05D008857 1.9e-49 199.5 161 63.4
Cc04_g01400 Coffea canephora HOM05D006979 ORTHO05D008857 2.5e-49 199.1 161 63.4
Sopen12g023760 Solanum pennellii HOM05D006979 ORTHO05D008857 3.3e-49 198.7 157 60.5
PGR119G0938 Punica granatum HOM05D006979 ORTHO05D008857 9.7e-49 197.2 133 71.4
Nn6g35601 Nelumbo nucifera HOM05D006979 ORTHO05D008857 1.1e-47 193.7 133 69.2
ClCG09G000940 Citrullus lanatus HOM05D006979 ORTHO05D008857 1.4e-47 193.4 204 50.0
BcaNung07150 Brassica carinata HOM05D006979 ORTHO05D008857 3.1e-47 192.2 156 59.6
Aqoxy5G02291 Aquilegia oxysepala HOM05D006979 ORTHO05D008857 5.3e-47 191.4 160 58.1
CARHR065560 Cardamine hirsuta HOM05D006979 ORTHO05D008857 9.0e-47 190.7 156 57.7
Hma1.2p1_0496F.1_g166210 Hydrangea macrophylla HOM05D006979 ORTHO05D008857 5.9e-46 188.0 140 63.6
C06p46960 Brassica napus HOM05D006979 ORTHO05D008857 7.7e-46 187.6 156 57.7
BolC6t39737H Brassica oleracea HOM05D006979 ORTHO05D008857 7.7e-46 187.6 156 57.7
AL2G32310 Arabidopsis lyrata HOM05D006979 ORTHO05D008857 1.0e-45 187.2 156 57.1
Sp5g27700 Schrenkiella parvula HOM05D006979 ORTHO05D008857 1.0e-45 187.2 156 57.1
Carub.0002s1948 Capsella rubella HOM05D006979 ORTHO05D008857 1.7e-45 186.4 156 56.4
PSO210G5065 Papaver somniferum HOM05D006979 ORTHO05D008857 2.9e-45 185.7 164 54.9
Thhalv10018914m.g Eutrema salsugineum HOM05D006979 ORTHO05D008857 3.8e-45 185.3 156 57.7
BcaC08g46707 Brassica carinata HOM05D006979 ORTHO05D008857 5.0e-45 184.9 156 57.7
PSO210G4684 Papaver somniferum HOM05D006979 ORTHO05D008857 5.0e-45 184.9 164 55.5
unitig_8.g3563 Utricularia gibba HOM05D006979 ORTHO05D008857 8.5e-45 184.1 161 57.8
CDE05G0714 Ceratophyllum demersum HOM05D006979 ORTHO05D008857 1.9e-44 183.0 150 58.0
Os03g0410700 Oryza sativa ssp. japonica HOM05D006979 ORTHO05D008857 2.5e-44 182.6 149 57.7
Aa31LG4G3010 Aethionema arabicum HOM05D006979 ORTHO05D008857 2.7e-43 179.1 157 58.0
ATR0598G212 Amborella trichopoda HOM05D006979 ORTHO05D008857 1.4e-42 176.8 159 55.3
A07p38800 Brassica napus HOM05D006979 ORTHO05D008857 2.0e-41 172.9 178 50.0
BraA07t31434Z Brassica rapa HOM05D006979 ORTHO05D008857 2.0e-41 172.9 178 50.0
Gohir.A05G140600 Gossypium hirsutum HOM05D006979 ORTHO05D008857 1.3e-40 170.2 161 53.4
MBI19_g11849_MAGBIO Magnolia biondii HOM05D006979 ORTHO05D008857 1.8e-39 166.4 156 54.5
SEGI_25115 Sequoiadendron giganteum HOM05D006979 ORTHO05D008857 2.7e-35 152.5 132 56.1
EL10Ac7g16405 Beta vulgaris HOM05D006979 ORTHO05D008857 8.2e-32 141.0 197 44.2
Pp3c11_2100 Physcomitrium patens HOM05D006979 ORTHO05D008857 1.1e-31 140.6 159 44.0
AT1G72640 Arabidopsis thaliana HOM05D006979 ORTHO05D008857 3.8e-29 132.1 101 62.4
Hma1.2p1_0496F.1_g166200 Hydrangea macrophylla HOM05D006979 ORTHO05D008857 1.1e-28 130.6 133 51.1
Zm00001eb019720 Zea mays HOM05D006979 ORTHO05D008857 5.3e-23 111.7 111 49.5
SMO117G0249 Selaginella moellendorffii HOM05D006979 ORTHO05D008857 3.8e-21 105.5 152 34.2
Medtr8g019490 Medicago truncatula HOM05D006979 ORTHO05D008857 1.7e-16 90.1 100 48.0
AagrBONN_evm.TU.Sc2ySwM_362.1497 Anthoceros agrestis HOM05D006979 ORTHO05D008857 9.1e-15 84.3 100 43.0
CDE05G2075 Ceratophyllum demersum HOM05D006979 ORTHO05D008857 2.9e-13 79.3 104 41.3
MELO3C024358.2 Cucumis melo HOM05D006979 ORTHO05D008857 4.4e-09 65.5 49 57.1
Mapoly0030s0154 Marchantia polymorpha HOM05D006979 ORTHO05D008857 6.3e-08 61.6 54 46.3
PSO063G2886 Papaver somniferum HOM05D003730 ORTHO05D004458 7.7e-06 54.7 93 36.6


User provided reference genes

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