Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_6g11060 Fragaria vesca HOM05D006801 ORTHO05D008490 1.3e-96 356.3 169 100.0
FAN14G3154 Fragaria x ananassa HOM05D006801 ORTHO05D008490 1.3e-96 356.3 169 100.0
RcHm_v2.0_Chr3g0462371 Rosa chinensis HOM05D006801 ORTHO05D008490 1.3e-88 329.7 168 91.7
FAN09G2180 Fragaria x ananassa HOM05D006801 ORTHO05D008490 2.2e-80 302.4 145 96.6
Prupe.6G281700 Prunus persica HOM05D006801 ORTHO05D008490 2.5e-76 288.9 169 78.7
TWI74G0346 Tripterygium wilfordii HOM05D006801 ORTHO05D008490 1.4e-71 273.1 167 76.6
MD04G1161900 Malus domestica HOM05D006801 ORTHO05D008490 2.7e-70 268.9 169 74.6
Ciclev10012687m.g Citrus clementina HOM05D006801 ORTHO05D008490 3.6e-70 268.5 167 74.3
DCAR_028865 Daucus carota HOM05D006801 ORTHO05D008490 3.6e-70 268.5 167 76.6
Manes.09G108600 Manihot esculenta HOM05D006801 ORTHO05D008490 6.1e-70 267.7 166 74.7
QL07p034435 Quercus lobata HOM05D006801 ORTHO05D008490 1.0e-69 266.9 166 75.3
Lj2A70T41 Lonicera japonica HOM05D006801 ORTHO05D008490 1.4e-69 266.5 166 74.1
Haze_21041 Corylus avellana HOM05D006801 ORTHO05D008490 1.8e-69 266.2 167 74.9
Cpa.g.sc120.28 Carica papaya HOM05D006801 ORTHO05D008490 8.8e-69 263.8 166 72.3
arahy.Tifrunner.gnm1.ann1.711CF1 Arachis hypogaea HOM05D006801 ORTHO05D008490 1.1e-68 263.5 166 75.3
Cc06_g01030 Coffea canephora HOM05D006801 ORTHO05D008490 2.0e-68 262.7 168 73.2
arahy.Tifrunner.gnm1.ann1.SWS1EB Arachis hypogaea HOM05D006801 ORTHO05D008490 3.3e-68 261.9 166 75.3
ECA247G2271 Erigeron canadensis HOM05D006801 ORTHO05D008490 7.4e-68 260.8 167 73.1
CiPaw.10G158900 Carya illinoinensis HOM05D006801 ORTHO05D008490 2.8e-67 258.8 168 73.2
Lsat_1_v5_gn_9_35501 Lactuca sativa HOM05D006801 ORTHO05D008490 2.8e-67 258.8 164 72.0
COL.COLO4_14495 Corchorus olitorius HOM05D006801 ORTHO05D008490 4.8e-67 258.1 165 72.1
Gorai.002G264900 Gossypium raimondii HOM05D006801 ORTHO05D008490 1.1e-66 256.9 167 71.9
CAN.G41.4 Capsicum annuum HOM05D006801 ORTHO05D008490 1.8e-66 256.1 163 73.0
TAR140G0003 Trochodendron aralioides HOM05D006801 ORTHO05D008490 1.8e-66 256.1 167 70.7
TAR623G0428 Trochodendron aralioides HOM05D006801 ORTHO05D008490 1.8e-66 256.1 167 70.7
Medtr4g017650 Medicago truncatula HOM05D006801 ORTHO05D008490 2.4e-66 255.8 166 72.9
HanXRQChr10g0291491 Helianthus annuus HOM05D006801 ORTHO05D008490 3.1e-66 255.4 164 72.6
GSVIVG01030332001 Vitis vinifera HOM05D006801 ORTHO05D008490 5.3e-66 254.6 167 71.3
Gohir.A04G094200 Gossypium hirsutum HOM05D006801 ORTHO05D008490 9.1e-66 253.8 165 70.9
Nitab4.5_0005348g0010 Nicotiana tabacum HOM05D006801 ORTHO05D008490 1.2e-65 253.4 164 72.0
Gohir.A01G228300 Gossypium hirsutum HOM05D006801 ORTHO05D008490 1.5e-65 253.1 167 69.5
Atru.chr8.2288 Acer truncatum HOM05D006801 ORTHO05D008490 2.0e-65 252.7 160 73.1
Lj3g0017579 Lotus japonicus HOM05D006801 ORTHO05D008490 2.0e-65 252.7 166 71.7
Cfa017164 Carpinus fangiana HOM05D006801 ORTHO05D008490 3.5e-65 251.9 167 71.9
Peaxi162Scf01132g00023 Petunia axillaris HOM05D006801 ORTHO05D008490 3.5e-65 251.9 164 72.0
Psat7g243680 Pisum sativum HOM05D006801 ORTHO05D008490 4.5e-65 251.5 166 71.1
VMungo0331G1898 Vigna mungo HOM05D006801 ORTHO05D008490 1.3e-64 250.0 167 71.3
ClCG10G022380 Citrullus lanatus HOM05D006801 ORTHO05D008490 1.7e-64 249.6 169 71.0
Migut.J00126 Erythranthe guttata HOM05D006801 ORTHO05D008490 1.7e-64 249.6 167 70.7
Lalb_Chr12g0207061 Lupinus albus HOM05D006801 ORTHO05D008490 1.7e-64 249.6 166 70.5
Eucgr.A00595 Eucalyptus grandis HOM05D006801 ORTHO05D008490 2.2e-64 249.2 167 71.3
Thecc.05G010700 Theobroma cacao HOM05D006801 ORTHO05D008490 2.9e-64 248.8 165 69.7
Aqoxy4G02453 Aquilegia oxysepala HOM05D006801 ORTHO05D008490 3.8e-64 248.4 171 69.6
CSS0028234 Camellia sinensis var. sinensis HOM05D006801 ORTHO05D008490 5.0e-64 248.1 167 68.3
Gohir.D04G133600 Gossypium hirsutum HOM05D006801 ORTHO05D008490 5.0e-64 248.1 165 69.1
Gorai.012G117400 Gossypium raimondii HOM05D006801 ORTHO05D008490 5.0e-64 248.1 165 69.1
CsaV3_3G033500 Cucumis sativus L. HOM05D006801 ORTHO05D008490 1.1e-63 246.9 169 69.2
Phvul.010G073500 Phaseolus vulgaris HOM05D006801 ORTHO05D008490 1.4e-63 246.5 164 71.3
TPR.G8225 Trifolium pratense HOM05D006801 ORTHO05D008490 1.4e-63 246.5 166 69.3
MSTRG.18989 Avicennia marina HOM05D006801 ORTHO05D008490 1.9e-63 246.1 166 69.3
MELO3C009141.2 Cucumis melo HOM05D006801 ORTHO05D008490 2.5e-63 245.7 169 69.2
Ca_20198_v3 Cicer arietinum L. HOM05D006801 ORTHO05D008490 5.5e-63 244.6 166 69.3
SalBow5G2624 Salvia bowleyana HOM05D006801 ORTHO05D008490 5.5e-63 244.6 161 70.2
SalBow5G4248 Salvia bowleyana HOM05D006801 ORTHO05D008490 7.2e-63 244.2 161 70.2
THA.LOC104816206 Tarenaya hassleriana HOM05D006801 ORTHO05D008490 7.2e-63 244.2 167 68.3
ECA247G3879 Erigeron canadensis HOM05D006801 ORTHO05D008490 1.6e-62 243.0 167 68.9
Nn2g13198 Nelumbo nucifera HOM05D006801 ORTHO05D008490 2.1e-62 242.7 168 70.8
PGR031G3867 Punica granatum HOM05D006801 ORTHO05D008490 2.1e-62 242.7 167 69.5
Potri.016G121000 Populus trichocarpa HOM05D006801 ORTHO05D008490 2.7e-62 242.3 166 69.3
Oeu033563.1 Olea europaea HOM05D006801 ORTHO05D008490 4.7e-62 241.5 166 69.3
Aa31LG1G22920 Aethionema arabicum HOM05D006801 ORTHO05D008490 2.3e-61 239.2 164 67.7
Glyma.01G123100 Glycine max HOM05D006801 ORTHO05D008490 3.0e-61 238.8 167 68.9
CANSAT35G1909 Cannabis sativa HOM05D006801 ORTHO05D008490 3.9e-61 238.4 168 68.5
Sp6g40620 Schrenkiella parvula HOM05D006801 ORTHO05D008490 6.7e-61 237.7 163 68.1
Carub.0006s0052 Capsella rubella HOM05D006801 ORTHO05D008490 1.5e-60 236.5 163 67.5
BraA10t45402Z Brassica rapa HOM05D006801 ORTHO05D008490 2.0e-60 236.1 165 66.7
CARHR211660 Cardamine hirsuta HOM05D006801 ORTHO05D008490 2.6e-60 235.7 160 68.8
Glyma.03G052200 Glycine max HOM05D006801 ORTHO05D008490 2.6e-60 235.7 167 68.3
PSO170G1048 Papaver somniferum HOM05D006801 ORTHO05D008490 4.4e-60 235.0 167 68.3
AUR62030790 Chenopodium quinoa HOM05D006801 ORTHO05D008490 9.7e-60 233.8 167 66.5
BcaC06g31972 Brassica carinata HOM05D006801 ORTHO05D008490 1.7e-59 233.0 165 65.5
PSO729G0120 Papaver somniferum HOM05D006801 ORTHO05D008490 2.2e-59 232.6 172 65.7
AUR62030503 Chenopodium quinoa HOM05D006801 ORTHO05D008490 6.3e-59 231.1 167 67.1
Sopen09g001050 Solanum pennellii HOM05D006801 ORTHO05D008490 8.2e-59 230.7 167 67.1
AL6G10870 Arabidopsis lyrata HOM05D006801 ORTHO05D008490 1.8e-58 229.6 163 65.6
SGA_v2.0_scaffold85G26712 Striga asiatica HOM05D000053 ORTHO05D008490 1.8e-58 229.6 163 67.5
Solyc09g005060.3 Solanum lycopersicum HOM05D006801 ORTHO05D008490 2.4e-58 229.2 167 66.5
AT5G01300 Arabidopsis thaliana HOM05D006801 ORTHO05D008490 7.0e-58 227.6 163 64.4
PSO729G0014 Papaver somniferum HOM05D006801 ORTHO05D008490 2.0e-57 226.1 170 63.5
Sc01g0005740 Simmondsia chinensis HOM05D006801 ORTHO05D008490 2.0e-57 226.1 165 62.4
PSO724G0025 Papaver somniferum HOM05D006801 ORTHO05D008490 3.5e-57 225.3 170 62.9
Lalb_Chr07g0191271 Lupinus albus HOM05D006801 ORTHO05D008490 5.9e-57 224.6 142 72.5
Os05g0468800 Oryza sativa ssp. japonica HOM05D006801 ORTHO05D008490 1.0e-56 223.8 168 64.3
unitig_26.g9083 Utricularia gibba HOM05D006801 ORTHO05D008490 1.0e-56 223.8 168 66.1
EL10Ac5g12521 Beta vulgaris HOM05D006801 ORTHO05D008490 2.2e-56 222.6 167 62.9
Ah.12g058900 Amaranthus hybridus HOM05D006801 ORTHO05D008490 2.7e-54 215.7 166 65.1
A10p33680 Brassica napus HOM05D005640 ORTHO05D007124 4.7e-54 214.9 141 70.2
C09p74590 Brassica napus HOM05D005640 ORTHO05D007124 1.2e-52 210.3 141 69.5
Thhalv10014869m.g Eutrema salsugineum HOM05D006801 ORTHO05D008490 1.3e-51 206.8 164 61.6
Medtr4g017680 Medicago truncatula HOM05D006801 ORTHO05D008490 8.3e-51 204.1 169 60.9
HPP92_026978 Vanilla planifolia HOM05D006801 ORTHO05D008490 5.3e-50 201.4 167 58.7
Sed0001867 Sechium edule HOM05D006801 ORTHO05D008490 1.7e-48 196.4 169 56.2
Lalb_Chr12g0207091 Lupinus albus HOM05D006801 ORTHO05D008490 3.8e-48 195.3 169 58.6
HPP92_015418 Vanilla planifolia HOM05D006801 ORTHO05D008490 3.8e-48 195.3 167 56.9
Zm00001eb351790 Zea mays HOM05D006801 ORTHO05D008490 3.8e-48 195.3 154 60.4
VMungo0331G1841 Vigna mungo HOM05D006801 ORTHO05D008490 5.0e-48 194.9 169 59.2
MBI15_g30116_MAGBIO Magnolia biondii HOM05D006801 ORTHO05D008490 6.5e-48 194.5 149 62.4
SEGI_01937 Sequoiadendron giganteum HOM05D006801 ORTHO05D008490 3.2e-47 192.2 168 51.2
Nitab4.5_0000539g0120 Nicotiana tabacum HOM05D006801 ORTHO05D008490 1.4e-45 186.8 130 67.7
Lj3g0026162 Lotus japonicus HOM05D006801 ORTHO05D008490 1.2e-44 183.7 171 56.7
CSS0011838 Camellia sinensis var. sinensis HOM05D006801 ORTHO05D008490 1.3e-43 180.3 171 54.4
arahy.Tifrunner.gnm1.ann1.M4T34S Arachis hypogaea HOM05D006801 ORTHO05D008490 1.4e-42 176.8 175 53.7
Dinv18520 Davidia involucrata HOM05D006801 ORTHO05D008490 9.1e-42 174.1 130 66.9
Gohir.D01G218200 Gossypium hirsutum HOM05D006801 ORTHO05D008490 1.6e-41 173.3 119 69.7
Mapoly0003s0041 Marchantia polymorpha HOM05D006801 ORTHO05D008490 1.6e-41 173.3 165 46.7
SMO347G0428 Selaginella moellendorffii HOM05D006801 ORTHO05D008490 1.9e-39 166.4 166 49.4
Pp3c1_41520 Physcomitrium patens HOM05D006801 ORTHO05D008490 6.1e-38 161.4 169 46.2
CDE08G0176 Ceratophyllum demersum HOM05D006801 ORTHO05D008490 8.0e-38 161.0 157 53.5
CBR_g39562 Chara braunii HOM05D006801 ORTHO05D008490 6.8e-37 157.9 167 43.1
AagrBONN_evm.TU.Sc2ySwM_228.3494 Anthoceros agrestis HOM05D006801 ORTHO05D008490 2.3e-32 142.9 143 51.0
Pp3c21_8040 Physcomitrium patens HOM05D006801 ORTHO05D008490 1.9e-31 139.8 150 46.0
Ca_20197_v3 Cicer arietinum L. HOM05D006801 ORTHO05D008490 1.6e-30 136.7 168 43.5
PGSC0003DMG400006267 Solanum tuberosum HOM05D006801 ORTHO05D008490 1.2e-28 130.6 85 72.9
arahy.Tifrunner.gnm1.ann1.1WC97K Arachis hypogaea HOM05D006801 ORTHO05D008490 2.9e-27 125.9 131 51.9
ATR0681G271 Amborella trichopoda HOM05D006801 ORTHO05D008490 3.7e-27 125.6 90 66.7
Hma1.2p1_0501F.1_g167640 Hydrangea macrophylla HOM05D006801 ORTHO05D008490 3.3e-23 112.5 107 52.3
Prupe.1G005200 Prunus persica HOM05D006801 ORTHO05D008490 2.3e-21 106.3 156 42.3
FAN05G3081 Fragaria x ananassa HOM05D000734 ORTHO05D002223 1.2e-17 94.0 44 100.0
ATR0681G235 Amborella trichopoda HOM05D006801 ORTHO05D008490 5.1e-16 88.6 51 74.5
Actinidia20750 Actinidia chinensis HOM05D006801 ORTHO05D008490 1.0e-08 64.3 122 35.2


User provided reference genes

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