Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN14G3092 Fragaria x ananassa HOM05D000249 ORTHO05D000206 1.4e-89 332.8 157 100.0
FvH4_1g22291 Fragaria vesca HOM05D000249 ORTHO05D000206 4.8e-53 211.5 127 84.3
FAN19G0987 Fragaria x ananassa HOM05D000249 ORTHO05D000206 1.1e-52 210.3 127 83.5
RcHm_v2.0_Chr2g0116481 Rosa chinensis HOM05D000249 ORTHO05D000206 9.1e-52 207.2 128 80.5
FAN23G2161 Fragaria x ananassa HOM05D000249 ORTHO05D000206 1.2e-51 206.8 127 82.7
Prupe.6G172900 Prunus persica HOM05D000249 ORTHO05D000206 9.4e-49 197.2 153 65.4
FAN13G3200 Fragaria x ananassa HOM05D000249 ORTHO05D000206 4.6e-48 194.9 152 69.1
FvH4_1g12040 Fragaria vesca HOM05D000249 ORTHO05D000206 3.1e-44 182.2 111 81.1
FvH4_2g07590 Fragaria vesca HOM05D000249 ORTHO05D000206 3.1e-44 182.2 111 81.1
FvH4_6g12310 Fragaria vesca HOM05D000249 ORTHO05D000206 5.3e-44 181.4 111 81.1
Glyma.06G146500 Glycine max HOM05D000249 ORTHO05D000206 4.5e-43 178.3 152 57.2
PGR004G0795 Punica granatum HOM05D000249 ORTHO05D000206 5.9e-43 177.9 158 58.9
Nn1g05186 Nelumbo nucifera HOM05D000249 ORTHO05D000206 1.7e-42 176.4 152 59.9
Ca_16893_v3 Cicer arietinum L. HOM05D000249 ORTHO05D000206 1.1e-41 173.7 152 55.9
Glyma.04G219400 Glycine max HOM05D000249 ORTHO05D000206 1.4e-41 173.3 152 54.6
Nitab4.5_0000904g0030 Nicotiana tabacum HOM05D000249 ORTHO05D000206 1.4e-41 173.3 153 58.8
Peaxi162Scf00359g00005 Petunia axillaris HOM05D000249 ORTHO05D000206 2.5e-41 172.6 150 58.0
Lj4P874T30 Lonicera japonica HOM05D000249 ORTHO05D000206 3.2e-41 172.2 152 57.2
CAN.G65.201 Capsicum annuum HOM05D000249 ORTHO05D000206 4.2e-41 171.8 150 58.7
Solyc04g051870.3 Solanum lycopersicum HOM05D000249 ORTHO05D000206 4.2e-41 171.8 150 58.7
Sopen04g023200 Solanum pennellii HOM05D000249 ORTHO05D000206 4.2e-41 171.8 150 58.7
Nitab4.5_0005995g0010 Nicotiana tabacum HOM05D000249 ORTHO05D000206 5.5e-41 171.4 153 58.2
PGSC0003DMG400016578 Solanum tuberosum HOM05D000249 ORTHO05D000206 5.5e-41 171.4 150 58.7
Ciclev10025908m.g Citrus clementina HOM05D000249 ORTHO05D000206 7.2e-41 171.0 152 52.6
arahy.Tifrunner.gnm1.ann1.F06NHS Arachis hypogaea HOM05D000249 ORTHO05D000206 9.4e-41 170.6 152 56.6
arahy.Tifrunner.gnm1.ann1.UKW8RL Arachis hypogaea HOM05D000249 ORTHO05D000206 9.4e-41 170.6 152 56.6
Hma1.2p1_0375F.1_g138740 Hydrangea macrophylla HOM05D000249 ORTHO05D000206 1.2e-40 170.2 152 59.2
Haze_25043 Corylus avellana HOM05D000249 ORTHO05D000206 2.1e-40 169.5 158 55.1
COL.COLO4_11012 Corchorus olitorius HOM05D000249 ORTHO05D000206 2.7e-40 169.1 152 56.6
CDE05G1217 Ceratophyllum demersum HOM05D000249 ORTHO05D000206 3.6e-40 168.7 151 55.0
Atru.chr12.1168 Acer truncatum HOM05D000249 ORTHO05D000206 4.7e-40 168.3 152 54.6
Cc07_g16240 Coffea canephora HOM05D000249 ORTHO05D000206 7.9e-40 167.5 150 58.0
Gorai.007G062200 Gossypium raimondii HOM05D000249 ORTHO05D000206 7.9e-40 167.5 152 54.6
Aqoxy6G00478 Aquilegia oxysepala HOM05D000249 ORTHO05D000206 1.0e-39 167.2 152 55.9
CANSAT01G1486 Cannabis sativa HOM05D000249 ORTHO05D000206 1.0e-39 167.2 152 57.9
Thecc.01G112800 Theobroma cacao HOM05D000249 ORTHO05D000206 1.0e-39 167.2 152 55.3
AUR62016279 Chenopodium quinoa HOM05D000249 ORTHO05D000206 1.8e-39 166.4 152 55.3
Eucgr.I00322 Eucalyptus grandis HOM05D000249 ORTHO05D000206 3.0e-39 165.6 153 57.5
Lalb_Chr08g0238861 Lupinus albus HOM05D000249 ORTHO05D000206 3.9e-39 165.2 153 54.9
CDE05G2401 Ceratophyllum demersum HOM05D000249 ORTHO05D000206 5.2e-39 164.9 151 55.0
Psat5g065400 Pisum sativum HOM05D006120 ORTHO05D007913 5.2e-39 164.9 152 55.3
CSS0013471 Camellia sinensis var. sinensis HOM05D000249 ORTHO05D000206 6.7e-39 164.5 152 55.3
Dinv19486 Davidia involucrata HOM05D000249 ORTHO05D000206 6.7e-39 164.5 152 55.3
Lj1g0013672 Lotus japonicus HOM05D000249 ORTHO05D000206 1.1e-38 163.7 152 54.6
Actinidia16043 Actinidia chinensis HOM05D000249 ORTHO05D000206 2.0e-38 162.9 152 57.2
BcaC02g08750 Brassica carinata HOM05D000249 ORTHO05D000206 2.0e-38 162.9 153 57.5
C04p51070 Brassica napus HOM05D000249 ORTHO05D000206 2.0e-38 162.9 153 57.5
CARHR113030 Cardamine hirsuta HOM05D000249 ORTHO05D000206 2.0e-38 162.9 153 57.5
Nn5g28908 Nelumbo nucifera HOM05D000249 ORTHO05D000206 2.0e-38 162.9 152 55.9
BolC4t26700H Brassica oleracea HOM05D000249 ORTHO05D000206 2.6e-38 162.5 153 57.5
Gohir.D11G057000 Gossypium hirsutum HOM05D000249 ORTHO05D000206 2.6e-38 162.5 152 53.9
Cfa002755 Carpinus fangiana HOM05D000249 ORTHO05D000206 3.3e-38 162.2 133 59.4
Rhsim10G0150200 Rhododendron simsii HOM05D000249 ORTHO05D000206 3.3e-38 162.2 152 55.9
Duzib264G0588 Durio zibethinus HOM05D000249 ORTHO05D000206 4.4e-38 161.8 152 53.9
MSTRG.23312 Avicennia marina HOM05D000249 ORTHO05D000206 1.7e-37 159.8 151 55.0
PSO541G4415 Papaver somniferum HOM05D000249 ORTHO05D000206 1.7e-37 159.8 152 55.9
Sp4g01030 Schrenkiella parvula HOM05D000249 ORTHO05D000206 1.7e-37 159.8 153 55.6
CAN.G767.7 Capsicum annuum HOM05D000249 ORTHO05D000206 2.2e-37 159.5 150 54.7
CiPaw.03G134300 Carya illinoinensis HOM05D000249 ORTHO05D000206 2.8e-37 159.1 152 52.6
Ah.11g043070 Amaranthus hybridus HOM05D000249 ORTHO05D000206 3.7e-37 158.7 152 53.9
A04p16540 Brassica napus HOM05D000249 ORTHO05D000206 3.7e-37 158.7 153 56.2
PSO675G5947 Papaver somniferum HOM05D000249 ORTHO05D000206 3.7e-37 158.7 152 55.9
QL06p032133 Quercus lobata HOM05D000249 ORTHO05D000206 4.8e-37 158.3 152 53.3
Oeu028524.1 Olea europaea HOM05D000249 ORTHO05D000206 6.3e-37 157.9 153 54.9
QL09p049197 Quercus lobata HOM05D003241 ORTHO05D003812 6.3e-37 157.9 152 53.3
Gohir.A11G053500 Gossypium hirsutum HOM05D000249 ORTHO05D000206 8.2e-37 157.5 152 52.6
Phvul.009G139400 Phaseolus vulgaris HOM05D000249 ORTHO05D000206 1.1e-36 157.1 152 54.6
VMungo1309G0394 Vigna mungo HOM05D000249 ORTHO05D000206 1.1e-36 157.1 152 53.3
TWI74G1430 Tripterygium wilfordii HOM05D000249 ORTHO05D000206 1.8e-36 156.4 159 50.3
AL4G11270 Arabidopsis lyrata HOM05D000249 ORTHO05D000206 2.4e-36 156.0 153 55.6
EL10Ac6g14755 Beta vulgaris HOM05D000249 ORTHO05D000206 2.4e-36 156.0 152 54.6
BcaB06g27798 Brassica carinata HOM05D000249 ORTHO05D000206 3.1e-36 155.6 154 56.5
BraA04t17290Z Brassica rapa HOM05D000249 ORTHO05D000206 4.1e-36 155.2 153 55.6
Sc10g0007200 Simmondsia chinensis HOM05D000249 ORTHO05D000206 9.1e-36 154.1 152 52.6
Aa31LG7G14700 Aethionema arabicum HOM05D000249 ORTHO05D000206 1.6e-35 153.3 153 54.2
Lsat_1_v5_gn_1_15001 Lactuca sativa HOM05D000249 ORTHO05D000206 1.6e-35 153.3 152 53.9
TAR381G1098 Trochodendron aralioides HOM05D000249 ORTHO05D000206 1.6e-35 153.3 154 54.5
AT2G21950 Arabidopsis thaliana HOM05D000249 ORTHO05D000206 2.6e-35 152.5 153 55.6
MBI05_g43694_MAGBIO Magnolia biondii HOM05D000249 ORTHO05D000206 3.5e-35 152.1 152 50.7
Sabra07G0068100 Salix brachista HOM05D000249 ORTHO05D000206 5.9e-35 151.4 154 52.6
MBI05_g43695_MAGBIO Magnolia biondii HOM05D000249 ORTHO05D000206 7.7e-35 151.0 152 51.3
Carub.0004s0109 Capsella rubella HOM05D000249 ORTHO05D000206 1.0e-34 150.6 153 54.2
SGA_v2.0_scaffold51G18753 Striga asiatica HOM05D000249 ORTHO05D000206 1.0e-34 150.6 146 53.4
DCAR_011455 Daucus carota HOM05D000249 ORTHO05D000206 1.7e-34 149.8 152 50.7
Migut.H02437 Erythranthe guttata HOM05D000249 ORTHO05D000206 1.7e-34 149.8 153 51.6
Potri.007G081100 Populus trichocarpa HOM05D000249 ORTHO05D000206 1.7e-34 149.8 154 51.3
ECA238G1420 Erigeron canadensis HOM05D000249 ORTHO05D000206 5.0e-34 148.3 152 52.0
THA.LOC104807868 Tarenaya hassleriana HOM05D000249 ORTHO05D000206 6.5e-34 147.9 153 54.2
CSS0028906 Camellia sinensis var. sinensis HOM05D000249 ORTHO05D000206 1.1e-33 147.1 143 53.1
Thhalv10000172m.g Eutrema salsugineum HOM05D000249 ORTHO05D000206 3.2e-33 145.6 153 53.6
Manes.13G076112 Manihot esculenta HOM05D000249 ORTHO05D000206 9.4e-33 144.1 154 48.1
GSVIVG01022227001 Vitis vinifera HOM05D000249 ORTHO05D000206 2.1e-32 142.9 150 52.7
TPR.G23751 Trifolium pratense HOM05D000249 ORTHO05D000206 4.7e-32 141.7 106 62.3
SEGI_29572 Sequoiadendron giganteum HOM05D000249 ORTHO05D000206 8.0e-32 141.0 152 46.1
unitig_899.g14606 Utricularia gibba HOM05D000249 ORTHO05D000206 4.0e-31 138.7 152 48.0
FAN02G4132 Fragaria x ananassa HOM05D000249 ORTHO05D000206 5.2e-31 138.3 156 53.8
AUR62003306 Chenopodium quinoa HOM05D000249 ORTHO05D000206 6.7e-31 137.9 117 58.1
ATR0564G264 Amborella trichopoda HOM05D000249 ORTHO05D000206 1.5e-30 136.7 165 43.6
HanXRQChr15g0484381 Helianthus annuus HOM05D000249 ORTHO05D000206 4.4e-30 135.2 117 59.8
Medtr3g094850 Medicago truncatula HOM05D000249 ORTHO05D000206 1.8e-28 129.8 127 52.0
DCAR_020950 Daucus carota HOM05D000249 ORTHO05D000206 3.8e-26 122.1 150 46.0
vmacro23033 Vaccinium macrocarpon HOM05D000249 ORTHO05D000206 3.8e-26 122.1 152 47.4
Cc07_g16260 Coffea canephora HOM05D000249 ORTHO05D000206 8.5e-26 120.9 148 48.6
PSO675G8073 Papaver somniferum HOM05D000249 ORTHO05D000206 6.8e-23 111.3 159 44.7
Zm00001eb111340 Zea mays HOM05D000249 ORTHO05D000206 7.5e-22 107.8 154 40.9
Os07g0673700 Oryza sativa ssp. japonica HOM05D000249 ORTHO05D000206 1.4e-20 103.6 153 39.9
FAN16G1704 Fragaria x ananassa HOM05D000249 ORTHO05D000206 2.7e-19 99.4 81 66.7
Atru.chr7.1152 Acer truncatum HOM05D000249 ORTHO05D000206 1.0e-18 97.4 96 46.9
Lj4P930T42 Lonicera japonica HOM05D000249 ORTHO05D000206 1.0e-18 97.4 107 49.5
FAN24G0552 Fragaria x ananassa HOM05D000249 ORTHO05D000206 5.0e-18 95.1 85 58.8
FvH4_2g03700 Fragaria vesca HOM05D000249 ORTHO05D000206 1.5e-17 93.6 85 56.5
CANSAT01G0241 Cannabis sativa HOM05D000249 ORTHO05D000206 1.6e-16 90.1 144 34.0
Cpa.g.sc191.3 Carica papaya HOM05D000249 ORTHO05D000206 1.8e-15 86.7 107 43.9
arahy.Tifrunner.gnm1.ann1.GH94D8 Arachis hypogaea HOM05D000249 ORTHO05D000206 3.0e-15 85.9 83 54.2
Mapoly0002s0290 Marchantia polymorpha HOM05D000667 ORTHO05D000206 1.2e-14 84.0 162 30.2
Eucgr.E03295 Eucalyptus grandis HOM05D000249 ORTHO05D000206 9.8e-14 80.9 151 31.1
HPP92_016850 Vanilla planifolia HOM05D000249 ORTHO05D000206 3.7e-13 79.0 99 43.4
FAN05G0742 Fragaria x ananassa HOM05D000249 ORTHO05D000206 1.2e-11 73.9 46 76.1
Carub.0005s2133 Capsella rubella HOM05D000249 ORTHO05D000206 1.9e-09 66.6 145 31.7
AL6G47540 Arabidopsis lyrata HOM05D000249 ORTHO05D000206 3.3e-09 65.9 159 29.6
FAN26G1361 Fragaria x ananassa HOM05D000249 ORTHO05D000206 4.3e-09 65.5 38 78.9
Thhalv10027506m.g Eutrema salsugineum HOM05D000249 ORTHO05D000206 1.2e-08 63.9 133 29.3
THA.LOC109116437 Tarenaya hassleriana HOM05D000249 ORTHO05D000206 1.2e-08 63.9 158 33.5
C01p00590 Brassica napus HOM05D000249 ORTHO05D000206 2.8e-08 62.8 162 30.9
THA.LOC104807689 Tarenaya hassleriana HOM05D000249 ORTHO05D000206 2.8e-08 62.8 149 28.9
BcaNung05812 Brassica carinata HOM05D000249 ORTHO05D000206 6.1e-08 61.6 121 36.4
BolC1t00061H Brassica oleracea HOM05D000249 ORTHO05D000206 6.1e-08 61.6 121 36.4
Thhalv10029396m.g Eutrema salsugineum HOM05D000249 ORTHO05D000206 6.1e-08 61.6 155 29.0
AL2G16730 Arabidopsis lyrata HOM05D000249 ORTHO05D000206 8.0e-08 61.2 163 28.8
Thhalv10029317m.g Eutrema salsugineum HOM05D000249 ORTHO05D000206 8.0e-08 61.2 158 29.7
Thhalv10017708m.g Eutrema salsugineum HOM05D000249 ORTHO05D000206 1.4e-07 60.5 129 27.9
AL2G16030 Arabidopsis lyrata HOM05D000249 ORTHO05D000206 2.3e-07 59.7 116 32.8
Thhalv10017748m.g Eutrema salsugineum HOM05D000249 ORTHO05D000206 2.3e-07 59.7 146 30.8
Carub.0007s3641 Capsella rubella HOM05D000249 ORTHO05D000206 4.0e-07 58.9 147 29.3
CARHR164660 Cardamine hirsuta HOM05D000249 ORTHO05D000206 4.0e-07 58.9 136 30.1
Thhalv10017778m.g Eutrema salsugineum HOM05D000249 ORTHO05D000206 4.0e-07 58.9 159 30.2
BolC1t00060H Brassica oleracea HOM05D000249 ORTHO05D000206 5.2e-07 58.5 161 29.2
Thhalv10017704m.g Eutrema salsugineum HOM05D000249 ORTHO05D000206 5.2e-07 58.5 135 29.6
CARHR247150 Cardamine hirsuta HOM05D000249 ORTHO05D000206 1.2e-06 57.4 156 32.1
Thhalv10027175m.g Eutrema salsugineum HOM05D000249 ORTHO05D000206 1.2e-06 57.4 133 30.8
Carub.0003s2781 Capsella rubella HOM05D000249 ORTHO05D000206 3.4e-06 55.8 134 26.1
BcaC06g30953 Brassica carinata HOM05D000249 ORTHO05D000206 4.4e-06 55.5 141 27.0
SalBow8G4049 Salvia bowleyana HOM05D000249 ORTHO05D000206 5.8e-06 55.1 54 50.0


User provided reference genes

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