Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN14G3058 Fragaria x ananassa HOM05D003575 ORTHO05D003587 2.3e-105 385.6 196 100.0
FvH4_6g40530 Fragaria vesca HOM05D003575 ORTHO05D003587 4.3e-59 231.9 119 99.2
RcHm_v2.0_Chr2g0155791 Rosa chinensis HOM05D003575 ORTHO05D003587 2.1e-42 176.4 108 82.4
RcHm_v2.0_Chr7g0213061 Rosa chinensis HOM05D003575 ORTHO05D003587 5.1e-36 155.2 167 53.3
FvH4_5g23730 Fragaria vesca HOM05D003575 ORTHO05D003587 8.1e-34 147.9 138 58.0
FAN18G1810 Fragaria x ananassa HOM05D003575 ORTHO05D003587 1.8e-33 146.7 118 62.7
FAN18G2204 Fragaria x ananassa HOM05D003575 ORTHO05D003587 2.4e-33 146.4 131 58.8
RcHm_v2.0_Chr5g0034301 Rosa chinensis HOM05D003575 ORTHO05D003587 1.1e-30 137.5 143 53.8
FAN21G1295 Fragaria x ananassa HOM05D003575 ORTHO05D003587 4.6e-29 132.1 121 58.7
FvH4_3g20410 Fragaria vesca HOM05D003575 ORTHO05D003587 7.9e-29 131.3 141 52.5
FAN11G3075 Fragaria x ananassa HOM05D003575 ORTHO05D003587 7.9e-29 131.3 141 52.5
FAN11G2840 Fragaria x ananassa HOM05D003575 ORTHO05D003587 1.0e-28 131.0 121 58.7
FAN21G0497 Fragaria x ananassa HOM05D003575 ORTHO05D003587 1.0e-28 131.0 141 51.8
FAN16G0569 Fragaria x ananassa HOM05D003575 ORTHO05D003587 5.1e-28 128.6 141 51.8
MD17G1118100 Malus domestica HOM05D003575 ORTHO05D003587 8.7e-28 127.9 114 57.9
FAN16G3603 Fragaria x ananassa HOM05D003575 ORTHO05D003587 1.1e-27 127.5 143 51.0
FAN15G3143 Fragaria x ananassa HOM05D003575 ORTHO05D003587 4.8e-26 122.1 102 61.8
FvH4_2g12920 Fragaria vesca HOM05D003575 ORTHO05D003587 6.2e-26 121.7 102 61.8
FAN24G1566 Fragaria x ananassa HOM05D003575 ORTHO05D003587 6.2e-26 121.7 102 61.8
FAN20G0397 Fragaria x ananassa HOM05D003575 ORTHO05D003587 1.4e-25 120.6 102 60.8
Prupe.3G196500 Prunus persica HOM05D003575 ORTHO05D003587 1.8e-25 120.2 110 55.5
FvH4_3g20450 Fragaria vesca HOM05D039614 ORTHO05D045963 6.9e-25 118.2 136 49.3
FvH4_6g40520 Fragaria vesca HOM05D003575 ORTHO05D003587 6.9e-25 118.2 102 57.8
FAN11G0216 Fragaria x ananassa HOM05D003575 ORTHO05D045963 2.0e-24 116.7 127 51.2
FAN14G2021 Fragaria x ananassa HOM05D003575 ORTHO05D003587 4.5e-24 115.5 102 57.8
MD09G1128800 Malus domestica HOM05D003575 ORTHO05D003587 7.6e-24 114.8 97 58.8
FvH4_3g17720 Fragaria vesca HOM05D003575 ORTHO05D003587 1.1e-22 110.9 92 63.0
FvH4_6g40510 Fragaria vesca HOM05D003575 ORTHO05D003587 1.1e-22 110.9 115 51.3
RcHm_v2.0_Chr2g0155771 Rosa chinensis HOM05D003575 ORTHO05D003587 1.1e-22 110.9 94 60.6
TWI36G1168 Tripterygium wilfordii HOM05D003575 ORTHO05D003587 1.3e-20 104.0 111 47.7
Dinv21311 Davidia involucrata HOM05D003575 ORTHO05D003587 2.3e-20 103.2 123 44.7
CSS0012601 Camellia sinensis var. sinensis HOM05D003575 ORTHO05D003587 5.1e-20 102.1 119 44.5
CSS0035464 Camellia sinensis var. sinensis HOM05D003575 ORTHO05D003587 5.1e-20 102.1 119 44.5
TAR626G1391 Trochodendron aralioides HOM05D003575 ORTHO05D003587 8.7e-20 101.3 90 55.6
CANSAT64G0731 Cannabis sativa HOM05D003575 ORTHO05D003587 2.5e-19 99.8 120 43.3
TWI18G0759 Tripterygium wilfordii HOM05D003575 ORTHO05D003587 9.7e-19 97.8 111 43.2
CANSAT21G1971 Cannabis sativa HOM05D003575 ORTHO05D003587 1.3e-18 97.4 120 40.8
CDE04G2197 Ceratophyllum demersum HOM05D003575 ORTHO05D003587 1.3e-18 97.4 105 45.7
Potri.002G216900 Populus trichocarpa HOM05D003575 ORTHO05D003587 4.8e-18 95.5 89 49.4
Actinidia07857 Actinidia chinensis HOM05D003575 ORTHO05D003587 1.4e-17 94.0 96 47.9
Aqoxy4G01549 Aquilegia oxysepala HOM05D003575 ORTHO05D003587 1.8e-17 93.6 111 42.3
Aqoxy5G03849 Aquilegia oxysepala HOM05D003575 ORTHO05D003587 1.8e-17 93.6 142 36.6
FAN25G1379 Fragaria x ananassa HOM05D003575 ORTHO05D003587 2.4e-17 93.2 83 57.8
DCAR_019672 Daucus carota HOM05D003575 ORTHO05D003587 4.1e-17 92.4 142 36.6
Nn1g03152 Nelumbo nucifera HOM05D003575 ORTHO05D003587 4.1e-17 92.4 127 40.9
Ciclev10015675m.g Citrus clementina HOM05D003575 ORTHO05D003587 5.3e-17 92.0 124 43.5
Manes.12G063604 Manihot esculenta HOM05D003575 ORTHO05D003587 6.9e-17 91.7 93 43.0
Aqoxy5G03850 Aquilegia oxysepala HOM05D003575 ORTHO05D003587 9.0e-17 91.3 103 45.6
Hma1.2p1_0599F.1_g187070 Hydrangea macrophylla HOM05D003575 ORTHO05D003587 1.2e-16 90.9 124 39.5
QL04p067739 Quercus lobata HOM05D003575 ORTHO05D003587 2.0e-16 90.1 144 38.2
Thecc.01G197600 Theobroma cacao HOM05D003575 ORTHO05D003587 2.0e-16 90.1 107 41.1
vmacro12070 Vaccinium macrocarpon HOM05D003575 ORTHO05D003587 4.5e-16 89.0 144 36.8
Duzib133G0340 Durio zibethinus HOM05D003575 ORTHO05D003587 5.9e-16 88.6 106 42.5
Rhsim06G0177900 Rhododendron simsii HOM05D003575 ORTHO05D003587 7.7e-16 88.2 100 44.0
TPR.G22472 Trifolium pratense HOM05D003575 ORTHO05D003587 2.2e-15 86.7 108 39.8
MBI15_g48140_MAGBIO Magnolia biondii HOM05D003575 ORTHO05D003587 3.8e-15 85.9 104 42.3
PSO541G2609 Papaver somniferum HOM05D003575 ORTHO05D003587 5.0e-15 85.5 84 48.8
PSO675G6399 Papaver somniferum HOM05D003575 ORTHO05D003587 5.0e-15 85.5 84 48.8
Sabra02G0168700 Salix brachista HOM05D003575 ORTHO05D003587 5.0e-15 85.5 87 46.0
Ca_16343_v3 Cicer arietinum L. HOM05D003575 ORTHO05D003587 8.5e-15 84.7 93 41.9
Lsat_1_v5_gn_7_97980 Lactuca sativa HOM05D000074 ORTHO05D001293 1.1e-14 84.3 111 38.7
TPR.G40538 Trifolium pratense HOM05D003575 ORTHO05D003587 1.1e-14 84.3 96 40.6
Lj6g0014157 Lotus japonicus HOM05D003575 ORTHO05D003587 1.4e-14 84.0 131 34.4
AUR62035876 Chenopodium quinoa HOM05D003575 ORTHO05D003587 1.9e-14 83.6 113 40.7
AUR62014996 Chenopodium quinoa HOM05D003575 ORTHO05D003587 7.2e-14 81.6 113 38.9
Gohir.A07G087300 Gossypium hirsutum HOM05D003575 ORTHO05D003587 7.2e-14 81.6 93 43.0
Sed0014379 Sechium edule HOM05D003575 ORTHO05D003587 7.2e-14 81.6 98 42.9
Medtr3g082740 Medicago truncatula HOM05D003575 ORTHO05D003587 1.2e-13 80.9 100 39.0
ECA236G1196 Erigeron canadensis HOM05D003366 ORTHO05D004045 1.6e-13 80.5 94 41.5
ClCG02G002950 Citrullus lanatus HOM05D003575 ORTHO05D003587 2.1e-13 80.1 127 37.0
Gohir.A11G148300 Gossypium hirsutum HOM05D003575 ORTHO05D003587 2.1e-13 80.1 106 41.5
Psat5g104640 Pisum sativum HOM05D003575 ORTHO05D003587 2.1e-13 80.1 103 36.9
Gohir.D11G155100 Gossypium hirsutum HOM05D003575 ORTHO05D003587 2.7e-13 79.7 99 41.4
Gorai.007G165400 Gossypium raimondii HOM05D003575 ORTHO05D003587 2.7e-13 79.7 99 41.4
Medtr3g082720 Medicago truncatula HOM05D003575 ORTHO05D003587 2.7e-13 79.7 91 38.5
MSTRG.426 Avicennia marina HOM05D003575 ORTHO05D003587 3.6e-13 79.3 109 35.8
CiPaw.04G197600 Carya illinoinensis HOM05D003575 ORTHO05D003587 3.6e-13 79.3 106 36.8
MELO3C030470.2 Cucumis melo HOM05D003575 ORTHO05D003587 3.6e-13 79.3 98 39.8
Gohir.D07G092200 Gossypium hirsutum HOM05D003575 ORTHO05D003587 3.6e-13 79.3 93 41.9
Gorai.001G098800 Gossypium raimondii HOM05D003575 ORTHO05D003587 3.6e-13 79.3 93 41.9
Hund01540 Selenicereus undatus HOM05D003575 ORTHO05D003587 3.6e-13 79.3 81 45.7
HanXRQChr04g0126411 Helianthus annuus HOM05D003575 ORTHO05D003587 4.6e-13 79.0 104 35.6
AUR62029125 Chenopodium quinoa HOM05D003575 ORTHO05D003587 6.1e-13 78.6 113 38.1
Lsat_1_v5_gn_7_97960 Lactuca sativa HOM05D003575 ORTHO05D003587 7.9e-13 78.2 95 40.0
Oeu029955.1 Olea europaea HOM05D003575 ORTHO05D003587 1.0e-12 77.8 104 38.5
CsaV3_3G046180 Cucumis sativus L. HOM05D003575 ORTHO05D003587 1.4e-12 77.4 114 36.0
MBI15_g44598_MAGBIO Magnolia biondii HOM05D003575 ORTHO05D003587 1.8e-12 77.0 103 41.7
arahy.Tifrunner.gnm1.ann1.04VE6P Arachis hypogaea HOM05D003575 ORTHO05D003587 3.0e-12 76.3 95 34.7
HanXRQChr16g0520571 Helianthus annuus HOM05D003575 ORTHO05D003587 3.0e-12 76.3 86 41.9
ECA236G0897 Erigeron canadensis HOM05D003575 ORTHO05D003587 3.9e-12 75.9 95 37.9
HanXRQChr04g0126401 Helianthus annuus HOM05D003575 ORTHO05D003587 3.9e-12 75.9 104 38.5
Migut.L00790 Erythranthe guttata HOM05D003575 ORTHO05D003587 6.7e-12 75.1 140 30.7
PGSC0003DMG401004292 Solanum tuberosum HOM05D003575 ORTHO05D003587 8.8e-12 74.7 175 30.9
Peaxi162Scf00802g00028 Petunia axillaris HOM05D003575 ORTHO05D003587 1.1e-11 74.3 114 38.6
arahy.Tifrunner.gnm1.ann1.F2CSMS Arachis hypogaea HOM05D003575 ORTHO05D003587 1.5e-11 73.9 95 33.7
arahy.Tifrunner.gnm1.ann1.RMR7W1 Arachis hypogaea HOM05D003575 ORTHO05D003587 1.5e-11 73.9 95 33.7
Glyma.13G186300 Glycine max HOM05D003575 ORTHO05D003587 2.0e-11 73.6 96 34.4
Phvul.011G189400 Phaseolus vulgaris HOM05D003575 ORTHO05D003587 2.0e-11 73.6 99 33.3
Ah.01g002520 Amaranthus hybridus HOM05D004224 ORTHO05D006437 2.5e-11 73.2 122 35.2
Phvul.007G122046 Phaseolus vulgaris HOM05D003575 ORTHO05D003587 2.5e-11 73.2 109 30.3
Sopen12g002030 Solanum pennellii HOM05D003575 ORTHO05D003587 4.3e-11 72.4 145 31.7
ATR0751G270 Amborella trichopoda HOM05D003575 ORTHO05D003587 5.7e-11 72.0 89 39.3
Medtr6g042090 Medicago truncatula HOM05D003575 ORTHO05D003587 5.7e-11 72.0 142 31.0
Solyc12g006060.2 Solanum lycopersicum HOM05D003575 ORTHO05D003587 7.4e-11 71.6 145 31.7
SGA_v2.0_scaffold407G51066 Striga asiatica HOM05D003575 ORTHO05D003587 9.7e-11 71.2 107 33.6
VMungo0647G0230 Vigna mungo HOM05D003575 ORTHO05D003587 2.2e-10 70.1 112 30.4
Sed0014111 Sechium edule HOM05D003575 ORTHO05D003587 2.8e-10 69.7 88 38.6
Lalb_Chr14g0362581 Lupinus albus HOM05D003575 ORTHO05D003587 3.7e-10 69.3 86 39.5
Peaxi162Scf00047g02035 Petunia axillaris HOM05D003575 ORTHO05D003587 4.8e-10 68.9 93 33.3
CAN.G437.6 Capsicum annuum HOM05D003575 ORTHO05D003587 1.4e-09 67.4 94 37.2
Nitab4.5_0009864g0030 Nicotiana tabacum HOM05D003575 ORTHO05D003587 2.4e-09 66.6 119 30.3
Medtr6g042040 Medicago truncatula HOM05D003575 ORTHO05D003587 3.1e-09 66.2 134 30.6
Solyc07g045320.3 Solanum lycopersicum HOM05D003575 ORTHO05D003587 1.2e-08 64.3 94 34.0
EL10Ac9g22664 Beta vulgaris HOM05D003575 ORTHO05D003587 1.5e-08 63.9 81 37.0
Haze_12614 Corylus avellana HOM05D003366 ORTHO05D004045 1.5e-08 63.9 82 37.8
Haze_12603 Corylus avellana HOM05D003366 ORTHO05D004045 2.0e-08 63.5 78 37.2
Nitab4.5_0000622g0080 Nicotiana tabacum HOM05D003575 ORTHO05D003587 2.0e-08 63.5 85 37.6
Sopen07g023850 Solanum pennellii HOM05D003575 ORTHO05D003587 2.6e-08 63.2 95 32.6
COL.COLO4_19638 Corchorus olitorius HOM05D003575 ORTHO05D003587 3.4e-08 62.8 99 33.3
Nitab4.5_0004644g0050 Nicotiana tabacum HOM05D003575 ORTHO05D003587 3.4e-08 62.8 85 36.5
Glyma.13G007400 Glycine max HOM05D003575 ORTHO05D003587 4.5e-08 62.4 74 33.8
Cc00_g01040 Coffea canephora HOM05D003575 ORTHO05D003587 5.9e-08 62.0 99 30.3
RcHm_v2.0_Chr5g0029431 Rosa chinensis HOM05D003575 ORTHO05D003587 1.0e-07 61.2 65 50.8
PSO339G5808 Papaver somniferum HOM05D003575 ORTHO05D003587 2.2e-07 60.1 65 43.1
PGSC0003DMG400017406 Solanum tuberosum HOM05D003575 ORTHO05D003587 3.8e-07 59.3 103 33.0
CAN.G437.9 Capsicum annuum HOM05D003575 ORTHO05D003587 5.0e-07 58.9 86 34.9
MBI15_g06462_MAGBIO Magnolia biondii HOM05D003575 ORTHO05D003587 5.0e-07 58.9 105 34.3
SalBow1G3222 Salvia bowleyana HOM05D003575 ORTHO05D003587 5.0e-07 58.9 141 27.7
Aqoxy91s001 Aquilegia oxysepala HOM05D003575 ORTHO05D003587 6.5e-07 58.5 63 46.0
SHI10168 Sapria himalayana HOM05D003575 ORTHO05D003587 4.2e-06 55.8 75 34.7


User provided reference genes

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