Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN14G3018 Fragaria x ananassa HOM05D005077 ORTHO05D006889 0.0e+00 1573.1 773 100.0
FAN14G2113 Fragaria x ananassa HOM05D005077 ORTHO05D006889 0.0e+00 1550.0 776 99.0
FAN09G0372 Fragaria x ananassa HOM05D005077 ORTHO05D006889 0.0e+00 1548.1 773 99.1
FvH4_6g01810 Fragaria vesca HOM05D005077 ORTHO05D006889 0.0e+00 1404.4 773 92.0
RcHm_v2.0_Chr3g0449521 Rosa chinensis HOM05D005077 ORTHO05D006889 0.0e+00 1296.6 774 84.8
Prupe.6G350500 Prunus persica HOM05D005077 ORTHO05D006889 0.0e+00 1128.2 780 74.5
MD04G1230700 Malus domestica HOM05D005077 ORTHO05D006889 0.0e+00 1094.7 776 72.7
Thecc.05G270400 Theobroma cacao HOM05D005077 ORTHO05D006889 1.1e-288 996.5 780 65.3
Cfa006359 Carpinus fangiana HOM05D005077 ORTHO05D006889 1.9e-288 995.7 780 64.7
CiPaw.07G073200 Carya illinoinensis HOM05D005077 ORTHO05D006889 3.6e-287 991.5 780 64.6
CANSAT54G1999 Cannabis sativa HOM05D005077 ORTHO05D006889 2.2e-284 982.2 779 64.6
GSVIVG01023486001 Vitis vinifera HOM05D005077 ORTHO05D006889 4.6e-282 974.5 778 64.3
Gorai.007G275500 Gossypium raimondii HOM05D005077 ORTHO05D006889 6.0e-282 974.2 780 64.0
Gohir.D11G257100 Gossypium hirsutum HOM05D005077 ORTHO05D006889 7.9e-282 973.8 780 63.8
COL.COLO4_15493 Corchorus olitorius HOM05D005077 ORTHO05D006889 1.5e-280 969.5 785 63.3
Duzib177G0384 Durio zibethinus HOM05D005077 ORTHO05D006889 1.5e-280 969.5 780 63.3
Potri.013G047400 Populus trichocarpa HOM05D005077 ORTHO05D006889 1.9e-280 969.1 779 63.5
Manes.08G139800 Manihot esculenta HOM05D005077 ORTHO05D006889 1.7e-276 956.1 780 63.6
Potri.019G019600 Populus trichocarpa HOM05D005077 ORTHO05D006889 8.4e-276 953.7 780 62.7
Rhsim05G0172000 Rhododendron simsii HOM05D005077 ORTHO05D006889 3.2e-275 951.8 781 61.7
Lj2A44T74 Lonicera japonica HOM05D005077 ORTHO05D006889 1.1e-272 943.3 799 61.0
TAR362G0145 Trochodendron aralioides HOM05D005077 ORTHO05D006889 9.6e-272 940.3 781 62.4
Sabra19G0032000 Salix brachista HOM05D005077 ORTHO05D006889 7.9e-266 920.6 835 58.3
Actinidia39994 Actinidia chinensis HOM05D005077 ORTHO05D006889 1.3e-265 919.8 780 60.6
Phvul.001G114900 Phaseolus vulgaris HOM05D005077 ORTHO05D006889 2.3e-265 919.1 782 61.3
Lj1g0022218 Lotus japonicus HOM05D005077 ORTHO05D006889 3.0e-265 918.7 779 60.3
QL07p018541 Quercus lobata HOM05D005077 ORTHO05D006889 2.5e-264 915.6 661 68.7
VMungo1383G1518 Vigna mungo HOM05D005077 ORTHO05D006889 5.7e-264 914.4 779 59.9
TWI36G1092 Tripterygium wilfordii HOM05D005077 ORTHO05D006889 6.3e-263 911.0 781 60.6
Glyma.19G115700 Glycine max HOM05D005077 ORTHO05D006889 1.1e-262 910.2 779 60.1
Ca_08303_v3 Cicer arietinum L. HOM05D005077 ORTHO05D006889 2.2e-260 902.5 810 57.4
Medtr7g111650 Medicago truncatula HOM05D005077 ORTHO05D006889 8.5e-260 900.6 780 58.8
Psat3g087440 Pisum sativum HOM05D005077 ORTHO05D006889 2.7e-258 895.6 780 59.5
MELO3C008703.2 Cucumis melo HOM05D005077 ORTHO05D006889 2.3e-257 892.5 780 60.8
TPR.G4698 Trifolium pratense HOM05D005077 ORTHO05D006889 7.4e-256 887.5 780 58.5
Gohir.A11G246900 Gossypium hirsutum HOM05D005077 ORTHO05D006889 2.8e-255 885.6 673 65.5
Cpa.g.sc306.8 Carica papaya HOM05D005077 ORTHO05D006889 1.1e-254 883.6 697 64.4
Ciclev10019185m.g Citrus clementina HOM05D005077 ORTHO05D006889 1.0e-252 877.1 667 67.3
Sed0014730 Sechium edule HOM05D005077 ORTHO05D006889 1.7e-252 876.3 777 59.3
ClCG11G010550 Citrullus lanatus HOM05D005077 ORTHO05D006889 6.5e-252 874.4 774 59.9
Sabra13G0043400 Salix brachista HOM05D005077 ORTHO05D006889 1.9e-251 872.8 758 60.2
arahy.Tifrunner.gnm1.ann1.2V8KIQ Arachis hypogaea HOM05D005077 ORTHO05D006889 1.0e-249 867.1 787 57.6
HanXRQChr14g0454211 Helianthus annuus HOM05D005077 ORTHO05D006889 1.4e-249 866.7 778 57.8
PGR142G0621 Punica granatum HOM05D005077 ORTHO05D006889 6.7e-249 864.4 777 59.2
vmacro19987 Vaccinium macrocarpon HOM05D005077 ORTHO05D006889 7.4e-248 860.9 812 56.9
Thhalv10020155m.g Eutrema salsugineum HOM05D005077 ORTHO05D006889 9.7e-248 860.5 775 57.2
Atru.chr2.993 Acer truncatum HOM05D005077 ORTHO05D006889 8.2e-247 857.4 645 68.8
CARHR078630 Cardamine hirsuta HOM05D005077 ORTHO05D006889 3.1e-246 855.5 779 57.1
Oeu006006.2 Olea europaea HOM05D005077 ORTHO05D006889 6.9e-246 854.4 781 57.6
Hund06905 Selenicereus undatus HOM05D005077 ORTHO05D006889 6.9e-246 854.4 790 55.9
THA.LOC104827285 Tarenaya hassleriana HOM05D005077 ORTHO05D006889 1.5e-245 853.2 777 57.7
AT3G04480 Arabidopsis thaliana HOM05D005077 ORTHO05D006889 3.4e-245 852.0 777 57.5
AL3G14430 Arabidopsis lyrata HOM05D005077 ORTHO05D006889 1.7e-244 849.7 776 57.6
Aa31LG5G14920 Aethionema arabicum HOM05D005077 ORTHO05D006889 2.9e-244 849.0 792 56.2
Carub.0003s0364 Capsella rubella HOM05D005077 ORTHO05D006889 5.0e-244 848.2 777 56.4
EL10Ac9g21459 Beta vulgaris HOM05D005077 ORTHO05D006889 8.5e-244 847.4 775 56.4
PSO832G3809 Papaver somniferum HOM05D005077 ORTHO05D006889 1.1e-243 847.0 784 57.3
BcaB04g19332 Brassica carinata HOM05D005077 ORTHO05D006889 5.5e-243 844.7 779 56.9
AUR62013106 Chenopodium quinoa HOM05D005077 ORTHO05D006889 1.2e-242 843.6 775 57.0
Lalb_Chr22g0358841 Lupinus albus HOM05D005077 ORTHO05D006889 1.2e-242 843.6 668 62.9
PSO210G4243 Papaver somniferum HOM05D005077 ORTHO05D006889 1.2e-242 843.6 783 57.2
Aqoxy5G00195 Aquilegia oxysepala HOM05D005077 ORTHO05D006889 2.1e-242 842.8 781 57.2
Sopen04g005220 Solanum pennellii HOM05D005077 ORTHO05D006889 3.6e-242 842.0 779 57.0
ECA238G3062 Erigeron canadensis HOM05D005077 ORTHO05D006889 6.1e-242 841.3 769 56.7
Solyc04g010080.3 Solanum lycopersicum HOM05D005077 ORTHO05D006889 6.1e-242 841.3 779 57.0
Eucgr.B02151 Eucalyptus grandis HOM05D005077 ORTHO05D006889 1.4e-241 840.1 780 58.1
BraA05t23044Z Brassica rapa HOM05D005077 ORTHO05D006889 2.3e-241 839.3 773 56.5
MBI10_g13801_MAGBIO Magnolia biondii HOM05D005077 ORTHO05D006889 3.9e-241 838.6 760 57.5
Nn1g02888 Nelumbo nucifera HOM05D005077 ORTHO05D006889 8.8e-241 837.4 717 61.4
C05p62770 Brassica napus HOM05D005077 ORTHO05D006889 2.0e-240 836.3 771 56.2
Nitab4.5_0006737g0070 Nicotiana tabacum HOM05D005077 ORTHO05D006889 2.6e-240 835.9 787 55.8
A05p43000 Brassica napus HOM05D005077 ORTHO05D006889 4.4e-240 835.1 773 55.5
CSS0033596 Camellia sinensis var. sinensis HOM05D005077 ORTHO05D006889 7.4e-240 834.3 706 61.5
MSTRG.27374 Avicennia marina HOM05D005077 ORTHO05D006889 1.7e-239 833.2 783 56.1
BcaC05g30222 Brassica carinata HOM05D005077 ORTHO05D006889 1.7e-239 833.2 772 55.8
BolC5t34930H Brassica oleracea HOM05D005077 ORTHO05D006889 1.1e-238 830.5 771 55.8
BraA03t12537Z Brassica rapa HOM05D005077 ORTHO05D006889 1.1e-238 830.5 777 56.4
BolC3t16351H Brassica oleracea HOM05D005077 ORTHO05D006889 1.8e-238 829.7 779 57.0
A03p33620 Brassica napus HOM05D005077 ORTHO05D006889 7.0e-238 827.8 774 56.6
PGSC0003DMG400011494 Solanum tuberosum HOM05D005077 ORTHO05D006889 7.0e-238 827.8 808 55.0
SalBow3G3009 Salvia bowleyana HOM05D005077 ORTHO05D006889 2.2e-236 822.8 787 55.5
BcaC01g04375 Brassica carinata HOM05D005077 ORTHO05D006889 1.9e-235 819.7 780 55.8
C03p40820 Brassica napus HOM05D005077 ORTHO05D006889 1.9e-235 819.7 780 55.8
DCAR_003547 Daucus carota HOM05D005077 ORTHO05D006889 3.2e-235 818.9 788 56.1
Sc20g0000660 Simmondsia chinensis HOM05D005077 ORTHO05D006889 3.2e-235 818.9 780 55.3
Migut.F00798 Erythranthe guttata HOM05D005077 ORTHO05D006889 2.1e-234 816.2 785 54.0
BcaC05g29939 Brassica carinata HOM05D005077 ORTHO05D006889 8.8e-233 810.8 774 55.3
Lsat_1_v5_gn_2_108321 Lactuca sativa HOM05D005077 ORTHO05D006889 1.5e-232 810.1 775 56.4
CsaV3_2G009810 Cucumis sativus L. HOM05D005077 ORTHO05D006889 7.7e-229 797.7 658 62.3
ATR0736G030 Amborella trichopoda HOM05D005077 ORTHO05D006889 7.2e-227 791.2 775 55.6
Cc02_g08770 Coffea canephora HOM05D005077 ORTHO05D006889 2.1e-226 789.6 664 60.4
Peaxi162Scf00528g00225 Petunia axillaris HOM05D005077 ORTHO05D006889 6.3e-223 778.1 781 53.3
arahy.Tifrunner.gnm1.ann1.FVV1VG Arachis hypogaea HOM05D005077 ORTHO05D006889 8.9e-217 757.7 801 52.1
arahy.Tifrunner.gnm1.ann1.BW8NI8 Arachis hypogaea HOM05D005077 ORTHO05D006889 8.3e-215 751.1 775 52.6
SGA_v2.0_scaffold1G00651 Striga asiatica HOM05D005077 ORTHO05D006889 4.5e-213 745.3 848 48.8
BcaC05g30195 Brassica carinata HOM05D005077 ORTHO05D006889 8.6e-212 741.1 771 51.6
Nitab4.5_0003780g0090 Nicotiana tabacum HOM05D005077 ORTHO05D006889 5.2e-209 731.9 787 51.6
arahy.Tifrunner.gnm1.ann1.2UET99 Arachis hypogaea HOM05D005077 ORTHO05D006889 8.3e-207 724.5 784 51.7
Dinv35947 Davidia involucrata HOM05D005077 ORTHO05D006889 1.9e-206 723.4 605 64.5
HPP92_014753 Vanilla planifolia HOM05D005077 ORTHO05D006889 9.2e-206 721.1 780 50.8
Os02g0810450 Oryza sativa ssp. japonica HOM05D005077 ORTHO05D006889 1.1e-203 714.1 783 51.1
Haze_04419 Corylus avellana HOM05D005077 ORTHO05D006889 2.8e-202 709.5 923 45.4
CAN.G786.40 Capsicum annuum HOM05D005077 ORTHO05D006889 5.8e-192 675.2 630 56.3
CDE07G0212 Ceratophyllum demersum HOM05D005077 ORTHO05D006889 3.2e-182 642.9 773 46.7
unitig_748.g6990 Utricularia gibba HOM05D005077 ORTHO05D006889 2.4e-174 616.7 787 46.6
Hma1.2p1_0114F.1_g055300 Hydrangea macrophylla HOM05D005077 ORTHO05D006889 6.0e-173 612.1 658 52.7
arahy.Tifrunner.gnm1.ann1.CACA61 Arachis hypogaea HOM05D005077 ORTHO05D006889 6.9e-169 598.6 789 45.8
Sp3g03330 Schrenkiella parvula HOM05D005077 ORTHO05D006889 6.4e-167 592.0 563 54.0
Oeu041238.1 Olea europaea HOM05D005077 ORTHO05D006889 1.6e-162 577.4 656 50.6
Zm00001eb258450 Zea mays HOM05D005077 ORTHO05D006889 2.2e-159 567.0 640 49.4
AagrBONN_evm.TU.Sc2ySwM_362.1555 Anthoceros agrestis HOM05D005077 ORTHO05D006889 1.3e-151 541.2 820 41.8
Eucgr.B02424 Eucalyptus grandis HOM05D005077 ORTHO05D006889 3.0e-148 530.0 526 54.0
Pp3c11_830 Physcomitrium patens HOM05D005077 ORTHO05D006889 9.0e-145 518.5 638 46.1
Mapoly0027s0145 Marchantia polymorpha HOM05D005077 ORTHO05D006889 4.8e-138 496.1 637 45.2
SMO348G0068 Selaginella moellendorffii HOM05D005077 ORTHO05D006889 1.1e-134 485.0 591 48.1
CBR_g3613 Chara braunii HOM05D005077 ORTHO05D006889 4.8e-130 469.5 651 43.8
AUR62010111 Chenopodium quinoa HOM05D005077 ORTHO05D006889 5.3e-113 412.9 397 52.4
SEGI_09343 Sequoiadendron giganteum HOM05D005077 ORTHO05D006889 1.0e-108 398.7 430 50.9
FAN05G3606 Fragaria x ananassa HOM05D005077 ORTHO05D019498 2.9e-95 354.0 186 94.6
PGSC0003DMG400019115 Solanum tuberosum HOM05D005077 ORTHO05D006889 6.1e-93 346.3 353 55.2
FAN05G0362 Fragaria x ananassa HOM05D005077 ORTHO05D006889 7.8e-80 302.8 147 98.6
MCO10G045 Micromonas commoda HOM05D005077 ORTHO05D006889 1.3e-74 285.4 559 34.3
PRCOL_00005667 Prasinoderma coloniale HOM05D005077 ORTHO05D006889 3.3e-70 270.8 676 32.1
Cre01.g033091 Chlamydomonas reinhardtii HOM05D005077 ORTHO05D006889 1.1e-62 245.7 735 28.3
SEGI_01626 Sequoiadendron giganteum HOM05D005077 ORTHO05D006889 2.8e-61 241.1 374 38.2
SEGI_03702 Sequoiadendron giganteum HOM05D005077 ORTHO05D006889 2.4e-52 211.5 266 45.1
SEGI_18706 Sequoiadendron giganteum HOM05D005077 ORTHO05D006889 9.0e-52 209.5 229 48.5
SHI22754 Sapria himalayana HOM05D005077 ORTHO05D006889 1.0e-47 196.1 196 57.1
Duzib106G1915 Durio zibethinus HOM05D005077 ORTHO05D006889 4.5e-43 180.6 160 59.4
Cfa026934 Carpinus fangiana HOM05D005077 ORTHO05D006889 7.4e-38 163.3 565 26.7
BcaC01g04372 Brassica carinata HOM05D003677 ORTHO05D004231 3.3e-22 111.3 135 49.6
arahy.Tifrunner.gnm1.ann1.TVQ2CS Arachis hypogaea HOM05D005077 ORTHO05D006889 2.2e-21 108.6 174 43.1
Lalb_Chr22g0358851 Lupinus albus HOM05D005077 ORTHO05D006889 5.9e-19 100.5 71 67.6
QL07p018546 Quercus lobata HOM05D005077 ORTHO05D006889 5.9e-19 100.5 71 66.2
C08p13010 Brassica napus HOM05D005077 ORTHO05D006889 1.7e-18 99.0 51 88.2
PGSC0003DMG400019116 Solanum tuberosum HOM05D005077 ORTHO05D018175 3.8e-18 97.8 98 42.9
Cc02_g08780 Coffea canephora HOM05D005077 ORTHO05D006889 1.1e-17 96.3 71 64.8
CSS0009313 Camellia sinensis var. sinensis HOM05D005077 ORTHO05D018175 1.8e-15 89.0 78 57.7
Peaxi162Scf00528g00025 Petunia axillaris HOM05D000011 ORTHO05D015719 3.9e-15 87.8 65 64.6
EL10Ac5g11645 Beta vulgaris HOM05D005077 ORTHO05D006889 2.0e-14 85.5 84 46.4
BcaC05g29940 Brassica carinata HOM05D005077 ORTHO05D018175 2.4e-12 78.6 66 65.2
Atru.chr2.994 Acer truncatum HOM05D005077 ORTHO05D018175 2.0e-11 75.5 69 59.4
CSS0021399 Camellia sinensis var. sinensis HOM05D005077 ORTHO05D018175 2.2e-10 72.0 66 53.0
CSS0037989 Camellia sinensis var. sinensis HOM05D005077 ORTHO05D018175 6.5e-10 70.5 66 53.0
Hund05190 Selenicereus undatus HOM05D005077 ORTHO05D006889 5.2e-07 60.8 84 46.4


User provided reference genes

Program Settings