Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN14G2961 Fragaria x ananassa HOM05D004545 ORTHO05D005420 1.2e-163 579.7 292 100.0
FvH4_6g42360 Fragaria vesca HOM05D004545 ORTHO05D005420 4.7e-163 577.8 292 99.7
FAN05G0363 Fragaria x ananassa HOM05D004545 ORTHO05D005420 8.9e-162 573.5 292 98.6
FAN02G2244 Fragaria x ananassa HOM05D004545 ORTHO05D005420 8.4e-160 567.0 306 94.8
RcHm_v2.0_Chr2g0158271 Rosa chinensis HOM05D004545 ORTHO05D005420 1.3e-155 553.1 291 95.9
Prupe.3G211000 Prunus persica HOM05D004545 ORTHO05D005420 1.2e-142 510.0 293 88.1
MD17G1103700 Malus domestica HOM05D004545 ORTHO05D005420 3.5e-142 508.4 291 87.6
MD09G1113600 Malus domestica HOM05D004545 ORTHO05D005420 3.3e-140 501.9 292 86.0
CANSAT64G0134 Cannabis sativa HOM05D004545 ORTHO05D005420 2.5e-135 485.7 294 84.4
Haze_12771 Corylus avellana HOM05D004545 ORTHO05D005420 4.2e-135 485.0 299 82.9
QL08p030801 Quercus lobata HOM05D004545 ORTHO05D005420 7.4e-132 474.2 299 81.3
Duzib133G1216 Durio zibethinus HOM05D004545 ORTHO05D005420 2.8e-131 472.2 295 82.0
Thecc.01G181500 Theobroma cacao HOM05D004545 ORTHO05D005420 2.4e-130 469.2 297 81.8
Cpa.g.sc132.18 Carica papaya HOM05D004545 ORTHO05D005420 5.3e-130 468.0 298 79.5
COL.COLO4_21869 Corchorus olitorius HOM05D004545 ORTHO05D005420 6.9e-130 467.6 297 81.8
Manes.13G066400 Manihot esculenta HOM05D004545 ORTHO05D005420 1.5e-129 466.5 297 80.5
Atru.chr6.3251 Acer truncatum HOM05D004545 ORTHO05D005420 4.5e-129 464.9 300 80.3
Manes.12G070000 Manihot esculenta HOM05D004545 ORTHO05D005420 3.8e-128 461.8 299 80.6
Gohir.D07G193600 Gossypium hirsutum HOM05D004545 ORTHO05D005420 8.4e-128 460.7 298 80.2
Hma1.2p1_0177F.1_g078020 Hydrangea macrophylla HOM05D004545 ORTHO05D005420 8.4e-128 460.7 297 80.1
Gorai.001G216700 Gossypium raimondii HOM05D004545 ORTHO05D005420 2.5e-127 459.1 298 79.9
Gohir.A07G187100 Gossypium hirsutum HOM05D004545 ORTHO05D005420 9.3e-127 457.2 298 79.5
CiPaw.03G155600 Carya illinoinensis HOM05D004545 ORTHO05D005420 1.2e-126 456.8 294 78.9
CiPaw.04G110900 Carya illinoinensis HOM05D004545 ORTHO05D005420 6.1e-126 454.5 299 77.6
TWI18G1088 Tripterygium wilfordii HOM05D004545 ORTHO05D005420 6.1e-126 454.5 299 79.9
MELO3C019739.2 Cucumis melo HOM05D004545 ORTHO05D005420 2.3e-125 452.6 299 78.6
CsaV3_6G015340 Cucumis sativus L. HOM05D004545 ORTHO05D005420 3.9e-125 451.8 299 78.9
GSVIVG01030499001 Vitis vinifera HOM05D004545 ORTHO05D005420 1.1e-124 450.3 292 79.8
TWI36G1393 Tripterygium wilfordii HOM05D004545 ORTHO05D005420 3.3e-124 448.7 299 78.9
ClCG02G018050 Citrullus lanatus HOM05D004545 ORTHO05D005420 9.7e-124 447.2 309 76.4
Actinidia10802 Actinidia chinensis HOM05D004545 ORTHO05D005420 1.4e-122 443.4 292 78.4
Ciclev10016078m.g Citrus clementina HOM05D004545 ORTHO05D005420 1.8e-122 443.0 301 78.1
Dinv08724 Davidia involucrata HOM05D004545 ORTHO05D005420 1.2e-121 440.3 292 78.1
Sed0009821 Sechium edule HOM05D004545 ORTHO05D005420 3.4e-121 438.7 295 79.0
Solyc08g013990.3 Solanum lycopersicum HOM05D004545 ORTHO05D005420 4.5e-121 438.3 289 78.2
TAR626G1663 Trochodendron aralioides HOM05D004545 ORTHO05D005420 5.9e-121 438.0 300 74.3
Potri.002G225100 Populus trichocarpa HOM05D004545 ORTHO05D005420 7.7e-121 437.6 297 77.8
Sabra02G0172100 Salix brachista HOM05D004545 ORTHO05D005420 7.7e-121 437.6 292 78.4
Oeu008952.2 Olea europaea HOM05D004545 ORTHO05D005420 1.0e-120 437.2 296 76.7
PGR142G4169 Punica granatum HOM05D004545 ORTHO05D005420 2.2e-120 436.0 298 75.5
Glyma.20G151100 Glycine max HOM05D004545 ORTHO05D005420 5.0e-120 434.9 267 82.4
VMungo0720G1040 Vigna mungo HOM05D004545 ORTHO05D005420 5.0e-120 434.9 271 81.5
Eucgr.K00758 Eucalyptus grandis HOM05D004545 ORTHO05D005420 6.5e-120 434.5 298 76.8
CSS0044911 Camellia sinensis var. sinensis HOM05D004545 ORTHO05D005420 8.5e-120 434.1 293 77.1
CAN.G466.2 Capsicum annuum HOM05D004545 ORTHO05D005420 3.2e-119 432.2 291 77.3
TAR624G0840 Trochodendron aralioides HOM05D004545 ORTHO05D005420 4.2e-119 431.8 299 76.9
Potri.014G158000 Populus trichocarpa HOM05D004545 ORTHO05D005420 5.5e-119 431.4 297 76.4
Phvul.007G062600 Phaseolus vulgaris HOM05D004545 ORTHO05D005420 9.4e-119 430.6 271 81.2
Sc12g0002080 Simmondsia chinensis HOM05D004545 ORTHO05D005420 1.2e-118 430.3 293 77.5
Hund12365 Selenicereus undatus HOM05D004545 ORTHO05D005420 1.6e-118 429.9 299 76.6
BcaC01g05879 Brassica carinata HOM05D004545 ORTHO05D005420 3.6e-118 428.7 295 76.3
C03p21500 Brassica napus HOM05D004545 ORTHO05D005420 6.1e-118 427.9 295 76.3
CSS0041882 Camellia sinensis var. sinensis HOM05D004545 ORTHO05D005420 6.1e-118 427.9 293 76.8
vmacro12662 Vaccinium macrocarpon HOM05D004545 ORTHO05D005420 6.1e-118 427.9 296 76.7
EL10Ac7g17335 Beta vulgaris HOM05D004545 ORTHO05D005420 1.0e-117 427.2 290 75.5
A03p18410 Brassica napus HOM05D004545 ORTHO05D005420 1.8e-117 426.4 297 75.8
Ah.01g004130 Amaranthus hybridus HOM05D004545 ORTHO05D005420 2.3e-117 426.0 296 76.0
PSO339G5690 Papaver somniferum HOM05D004545 ORTHO05D005420 3.0e-117 425.6 292 74.0
Peaxi162Scf00075g01538 Petunia axillaris HOM05D004545 ORTHO05D005420 3.0e-117 425.6 292 76.4
SGA_v2.0_scaffold106G30667 Striga asiatica HOM05D004545 ORTHO05D005420 3.0e-117 425.6 297 73.4
Glyma.10G243100 Glycine max HOM05D004545 ORTHO05D005420 6.7e-117 424.5 267 81.3
Nitab4.5_0005035g0030 Nicotiana tabacum HOM05D004545 ORTHO05D005420 6.7e-117 424.5 291 75.3
Cc04_g08550 Coffea canephora HOM05D004545 ORTHO05D005420 2.0e-116 422.9 294 73.8
Nitab4.5_0000242g0090 Nicotiana tabacum HOM05D004545 ORTHO05D005420 3.3e-116 422.2 291 74.9
PSO384G3673 Papaver somniferum HOM05D004545 ORTHO05D005420 7.4e-116 421.0 292 73.3
Thhalv10016881m.g Eutrema salsugineum HOM05D004545 ORTHO05D005420 9.7e-116 420.6 294 75.2
Nitab4.5_0008425g0010 Nicotiana tabacum HOM05D004545 ORTHO05D005420 9.7e-116 420.6 291 75.9
PSO384G1132 Papaver somniferum HOM05D004545 ORTHO05D005420 1.7e-115 419.9 290 73.4
Migut.L01518 Erythranthe guttata HOM05D004545 ORTHO05D005420 3.7e-115 418.7 289 75.8
Sed0012432 Sechium edule HOM05D004545 ORTHO05D005420 3.7e-115 418.7 273 79.9
Aa31LG5G4640 Aethionema arabicum HOM05D004545 ORTHO05D005420 6.3e-115 417.9 293 74.4
PSO339G1796 Papaver somniferum HOM05D004545 ORTHO05D005420 6.3e-115 417.9 290 74.5
PSO384G1091 Papaver somniferum HOM05D004545 ORTHO05D005420 8.2e-115 417.5 290 73.1
Carub.0004s1443 Capsella rubella HOM05D004545 ORTHO05D005420 2.4e-114 416.0 292 74.7
AL120U10020 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 3.1e-114 415.6 293 75.1
Lsat_1_v5_gn_5_124360 Lactuca sativa HOM05D004545 ORTHO05D005420 4.1e-114 415.2 286 76.6
BcaC02g11365 Brassica carinata HOM05D004545 ORTHO05D005420 5.3e-114 414.8 293 76.5
BolC3t14537H Brassica oleracea HOM05D004545 ORTHO05D005420 5.3e-114 414.8 314 71.3
BraA03t11104Z Brassica rapa HOM05D004545 ORTHO05D005420 6.9e-114 414.5 316 71.2
BraA05t20202Z Brassica rapa HOM05D004545 ORTHO05D005420 6.9e-114 414.5 291 75.3
Sp4g15340 Schrenkiella parvula HOM05D004545 ORTHO05D005420 6.9e-114 414.5 292 75.0
AT2G32980 Arabidopsis thaliana HOM05D004545 ORTHO05D005420 9.1e-114 414.1 295 74.2
HanXRQChr10g0306541 Helianthus annuus HOM05D004545 ORTHO05D005420 2.6e-113 412.5 282 76.6
THA.LOC104826135 Tarenaya hassleriana HOM05D004545 ORTHO05D005420 2.6e-113 412.5 256 83.6
C04p16530 Brassica napus HOM05D004545 ORTHO05D005420 1.3e-112 410.2 297 74.7
HanXRQChr12g0373651 Helianthus annuus HOM05D004545 ORTHO05D005420 2.2e-112 409.5 282 76.2
Sabra14G0120000 Salix brachista HOM05D004545 ORTHO05D005420 2.2e-112 409.5 296 73.3
CARHR126930 Cardamine hirsuta HOM05D004545 ORTHO05D005420 2.9e-112 409.1 293 73.4
ECA234G0510 Erigeron canadensis HOM05D004545 ORTHO05D005420 5.0e-112 408.3 283 77.4
Rhsim04G0050700 Rhododendron simsii HOM05D004545 ORTHO05D005420 5.0e-112 408.3 347 66.3
unitig_0.g926 Utricularia gibba HOM05D004545 ORTHO05D005420 1.9e-111 406.4 297 72.1
BcaB02g10513 Brassica carinata HOM05D004545 ORTHO05D005420 3.6e-110 402.1 295 74.2
Lj5g0014275 Lotus japonicus HOM05D004545 ORTHO05D005420 7.9e-110 401.0 245 84.9
AUR62018128 Chenopodium quinoa HOM05D004545 ORTHO05D005420 1.4e-109 400.2 275 76.0
AL7G46590 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 2.3e-109 399.4 252 82.1
AUR62034461 Chenopodium quinoa HOM05D004545 ORTHO05D005420 2.3e-109 399.4 275 75.6
MBI15_g08964_MAGBIO Magnolia biondii HOM05D004545 ORTHO05D005420 6.7e-109 397.9 304 71.1
arahy.Tifrunner.gnm1.ann1.71GTDD Arachis hypogaea HOM05D004545 ORTHO05D005420 1.5e-108 396.7 244 83.2
Peaxi162Scf00102g00840 Petunia axillaris HOM05D004545 ORTHO05D005420 1.5e-108 396.7 294 73.8
Migut.H01332 Erythranthe guttata HOM05D004545 ORTHO05D005420 2.6e-108 396.0 290 73.1
arahy.Tifrunner.gnm1.ann1.DQ148B Arachis hypogaea HOM05D004545 ORTHO05D005420 5.7e-108 394.8 244 82.8
arahy.Tifrunner.gnm1.ann1.N045ZR Arachis hypogaea HOM05D004545 ORTHO05D005420 7.4e-108 394.4 244 82.8
BcaB01g03956 Brassica carinata HOM05D004545 ORTHO05D005420 3.7e-107 392.1 274 76.6
Aqoxy2G01628 Aquilegia oxysepala HOM05D004545 ORTHO05D005420 4.8e-107 391.7 299 69.9
A05p12640 Brassica napus HOM05D004545 ORTHO05D005420 7.0e-106 387.9 263 77.2
Lj1A780G55 Lonicera japonica HOM05D004545 ORTHO05D005420 1.0e-104 384.0 254 78.7
Aqoxy4G01985 Aquilegia oxysepala HOM05D004545 ORTHO05D005420 1.5e-103 380.2 291 69.1
THA.LOC104816035 Tarenaya hassleriana HOM05D004545 ORTHO05D005420 1.9e-103 379.8 218 88.1
Medtr4g068700 Medicago truncatula HOM05D004545 ORTHO05D005420 9.4e-103 377.5 247 81.0
Ca_24113_v3 Cicer arietinum L. HOM05D004545 ORTHO05D005420 1.2e-102 377.1 246 79.3
BolC4t23201H Brassica oleracea HOM05D004545 ORTHO05D005420 4.7e-102 375.2 311 66.9
ATR0051G053 Amborella trichopoda HOM05D004545 ORTHO05D005420 5.7e-100 368.2 299 66.9
vmacro09357 Vaccinium macrocarpon HOM05D004545 ORTHO05D005420 9.7e-100 367.5 253 77.1
Psat7g206840 Pisum sativum HOM05D004545 ORTHO05D005420 1.3e-99 367.1 254 75.6
AL7G46610 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 3.5e-97 359.0 292 67.5
DCAR_027885 Daucus carota HOM05D004545 ORTHO05D005420 4.5e-97 358.6 244 77.9
HPP92_013545 Vanilla planifolia HOM05D004545 ORTHO05D005420 3.0e-93 345.9 286 65.7
FAN09G3372 Fragaria x ananassa HOM05D004545 ORTHO05D005420 1.2e-92 344.0 179 97.8
AL4G28510 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 9.8e-92 340.9 291 64.9
Os08g0204800 Oryza sativa ssp. japonica HOM05D004545 ORTHO05D005420 1.3e-91 340.5 279 66.7
Medtr1g102640 Medicago truncatula HOM05D004545 ORTHO05D005420 2.8e-91 339.3 224 80.4
DCAR_021142 Daucus carota HOM05D004545 ORTHO05D005420 1.6e-89 333.6 293 63.1
Zm00001eb413680 Zea mays HOM05D004545 ORTHO05D005420 6.5e-88 328.2 273 65.6
arahy.Tifrunner.gnm1.ann1.1MU1EY Arachis hypogaea HOM05D004545 ORTHO05D005420 1.0e-85 320.9 235 73.6
Psat6g203400 Pisum sativum HOM05D004545 ORTHO05D005420 4.9e-83 312.0 246 68.7
CSS0021334 Camellia sinensis var. sinensis HOM05D004545 ORTHO05D005420 1.6e-81 307.0 211 75.4
Nn1g08031 Nelumbo nucifera HOM05D004545 ORTHO05D005420 5.9e-81 305.1 179 83.8
SGA_v2.0_scaffold51G18651 Striga asiatica HOM05D004545 ORTHO05D005420 1.3e-80 303.9 215 75.8
Pp3c6_19990 Physcomitrium patens HOM05D004545 ORTHO05D005420 1.1e-79 300.8 317 52.4
Lsat_1_v5_gn_9_105760 Lactuca sativa HOM05D004545 ORTHO05D005420 4.3e-79 298.9 254 64.2
SMO340G0284 Selaginella moellendorffii HOM05D004545 ORTHO05D005420 4.0e-77 292.4 308 53.6
RcHm_v2.0_Chr1g0329411 Rosa chinensis HOM05D004545 ORTHO05D005420 2.0e-76 290.0 255 67.5
AagrBONN_evm.TU.Sc2ySwM_228.751 Anthoceros agrestis HOM05D004545 ORTHO05D005420 2.6e-76 289.7 305 52.8
ECA240G4712 Erigeron canadensis HOM05D003996 ORTHO05D004665 3.9e-72 275.8 211 65.9
Mapoly0045s0122 Marchantia polymorpha HOM05D004545 ORTHO05D005420 2.5e-71 273.1 271 56.1
HanXRQChr03g0076011 Helianthus annuus HOM05D004545 ORTHO05D005420 3.3e-71 272.7 271 57.6
HPP92_013592 Vanilla planifolia HOM05D004545 ORTHO05D005420 2.1e-70 270.0 179 74.9
Oeu040086.1 Olea europaea HOM05D004545 ORTHO05D005420 4.7e-70 268.9 252 59.9
CDE05G2122 Ceratophyllum demersum HOM05D004545 ORTHO05D005420 2.3e-69 266.5 248 59.3
SEGI_00177 Sequoiadendron giganteum HOM05D004545 ORTHO05D005420 2.0e-68 263.5 177 71.8
RcHm_v2.0_Chr2g0158231 Rosa chinensis HOM05D004545 ORTHO05D005420 1.3e-67 260.8 177 79.1
Nn6g32193 Nelumbo nucifera HOM05D004545 ORTHO05D005420 6.2e-62 241.9 163 74.2
Nitab4.5_0000185g0270 Nicotiana tabacum HOM05D004545 ORTHO05D005420 2.0e-60 236.9 201 64.2
Sopen08g004850 Solanum pennellii HOM05D004545 ORTHO05D005420 5.8e-60 235.3 139 84.2
CBR_g58792 Chara braunii HOM05D004545 ORTHO05D005420 2.4e-50 203.4 239 46.0
Gohir.D10G162700 Gossypium hirsutum HOM05D004545 ORTHO05D005420 3.5e-49 199.5 158 69.0
Sopen08g004840 Solanum pennellii HOM05D004545 ORTHO05D005420 6.6e-48 195.3 143 71.3
FAN09G2083 Fragaria x ananassa HOM05D004545 ORTHO05D005420 7.6e-44 181.8 89 98.9
Hund15353 Selenicereus undatus HOM05D004545 ORTHO05D005420 6.4e-43 178.7 120 80.0
Gohir.D10G109450 Gossypium hirsutum HOM05D004545 ORTHO05D005420 5.6e-39 165.6 112 76.8
Nn6g33383 Nelumbo nucifera HOM05D004545 ORTHO05D005420 1.9e-31 140.6 82 84.1
Gorai.011G120100 Gossypium raimondii HOM05D004545 ORTHO05D005420 2.5e-31 140.2 82 82.9
RcHm_v2.0_Chr2g0158241 Rosa chinensis HOM05D004545 ORTHO05D005420 7.6e-28 128.6 64 96.9
RcHm_v2.0_Chr1g0361251 Rosa chinensis HOM05D004545 ORTHO05D005420 1.2e-25 121.3 66 93.9
RcHm_v2.0_Chr2g0158191 Rosa chinensis HOM05D004545 ORTHO05D005420 3.2e-18 96.7 89 61.8
HPP92_013591 Vanilla planifolia HOM05D004545 ORTHO05D005420 1.1e-13 81.6 107 50.5
Medtr2g005760 Medicago truncatula HOM05D004545 ORTHO05D005420 2.2e-11 73.9 48 77.1
Nn6g33384 Nelumbo nucifera HOM05D004545 ORTHO05D005420 2.2e-11 73.9 48 75.0
TAR636G0182 Trochodendron aralioides HOM05D004545 ORTHO05D005420 5.7e-07 59.3 63 54.0


User provided reference genes

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