Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN14G2933 Fragaria x ananassa HOM05D004383 ORTHO05D005050 2.5e-136 488.8 247 100.0
FvH4_6g27370 Fragaria vesca HOM05D004383 ORTHO05D005050 7.5e-93 344.4 174 98.3
FAN05G0819 Fragaria x ananassa HOM05D004383 ORTHO05D005050 1.7e-92 343.2 174 97.7
FAN21G1236 Fragaria x ananassa HOM05D004383 ORTHO05D005050 3.6e-87 325.5 188 86.2
RcHm_v2.0_Chr6g0299241 Rosa chinensis HOM05D004383 ORTHO05D005050 2.3e-86 322.8 175 91.4
FAN16G3501 Fragaria x ananassa HOM05D004383 ORTHO05D005050 5.2e-86 321.6 175 89.7
FvH4_3g24420 Fragaria vesca HOM05D004383 ORTHO05D005050 6.8e-86 321.2 175 90.3
Prupe.1G396200 Prunus persica HOM05D004383 ORTHO05D005050 9.8e-85 317.4 175 90.3
FAN02G2967 Fragaria x ananassa HOM05D004383 ORTHO05D005050 1.7e-84 316.6 161 97.5
MD15G1042900 Malus domestica HOM05D004383 ORTHO05D005050 4.9e-84 315.1 175 89.7
CiPaw.08G004800 Carya illinoinensis HOM05D004383 ORTHO05D005050 7.0e-83 311.2 173 89.0
GSVIVG01035992001 Vitis vinifera HOM05D004383 ORTHO05D005050 5.9e-82 308.1 177 85.9
Gohir.A05G061400 Gossypium hirsutum HOM05D004383 ORTHO05D005050 1.0e-81 307.4 173 86.1
Gorai.009G064600 Gossypium raimondii HOM05D004383 ORTHO05D005050 1.0e-81 307.4 173 86.1
Manes.16G131700 Manihot esculenta HOM05D004383 ORTHO05D005050 1.7e-81 306.6 175 85.1
CSS0047262 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 3.8e-81 305.4 173 84.4
Manes.03G007300 Manihot esculenta HOM05D004383 ORTHO05D005050 5.0e-81 305.1 175 84.6
Gohir.D05G063900 Gossypium hirsutum HOM05D004383 ORTHO05D005050 1.1e-80 303.9 173 85.5
Gohir.D06G105600 Gossypium hirsutum HOM05D004383 ORTHO05D005050 1.1e-80 303.9 173 86.1
Thecc.09G012700 Theobroma cacao HOM05D004383 ORTHO05D005050 1.1e-80 303.9 173 86.1
Duzib187G0841 Durio zibethinus HOM05D004383 ORTHO05D005050 2.5e-80 302.8 173 85.5
Lj7A737G42 Lonicera japonica HOM05D004383 ORTHO05D005050 2.5e-80 302.8 174 85.1
PGR044G2662 Punica granatum HOM05D004383 ORTHO05D005050 2.5e-80 302.8 175 85.1
Eucgr.C04036 Eucalyptus grandis HOM05D004383 ORTHO05D005050 3.3e-80 302.4 175 84.6
CiPaw.07G231900 Carya illinoinensis HOM05D004383 ORTHO05D005050 4.2e-80 302.0 173 86.1
Atru.chr7.2584 Acer truncatum HOM05D004383 ORTHO05D005050 5.5e-80 301.6 175 84.6
Gorai.010G120200 Gossypium raimondii HOM05D004383 ORTHO05D005050 7.2e-80 301.2 173 85.0
COL.COLO4_18979 Corchorus olitorius HOM05D002641 ORTHO05D005050 1.6e-79 300.1 173 83.8
Hma1.2p1_0355F.1_g133920 Hydrangea macrophylla HOM05D004383 ORTHO05D005050 3.6e-79 298.9 179 82.1
Duzib168G1681 Durio zibethinus HOM05D004383 ORTHO05D005050 6.1e-79 298.1 173 84.4
Potri.006G266300 Populus trichocarpa HOM05D004383 ORTHO05D005050 8.0e-79 297.7 173 82.1
TWI32G1179 Tripterygium wilfordii HOM05D004383 ORTHO05D005050 1.4e-78 297.0 175 84.0
CSS0026414 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 2.3e-78 296.2 174 82.8
MELO3C016948.2 Cucumis melo HOM05D004383 ORTHO05D005050 3.0e-78 295.8 173 83.8
Potri.018G016800 Populus trichocarpa HOM05D004383 ORTHO05D005050 3.0e-78 295.8 173 81.5
Actinidia14139 Actinidia chinensis HOM05D004383 ORTHO05D005050 4.0e-78 295.4 171 84.2
CANSAT64G0435 Cannabis sativa HOM05D004383 ORTHO05D005050 4.0e-78 295.4 175 82.9
ECA238G1890 Erigeron canadensis HOM05D004383 ORTHO05D005050 5.2e-78 295.0 179 79.3
arahy.Tifrunner.gnm1.ann1.W5C21C Arachis hypogaea HOM05D004383 ORTHO05D005050 8.9e-78 294.3 168 85.7
TWI34G1410 Tripterygium wilfordii HOM05D004383 ORTHO05D005050 1.2e-77 293.9 173 83.2
Sed0012000 Sechium edule HOM05D004383 ORTHO05D005050 1.5e-77 293.5 173 82.1
arahy.Tifrunner.gnm1.ann1.S5PPFL Arachis hypogaea HOM05D004383 ORTHO05D005050 2.0e-77 293.1 168 85.1
CsaV3_4G036420 Cucumis sativus L. HOM05D004383 ORTHO05D005050 2.0e-77 293.1 173 83.2
Cc00_g24580 Coffea canephora HOM05D004383 ORTHO05D005050 5.7e-77 291.6 175 80.0
Nn3g19885 Nelumbo nucifera HOM05D004383 ORTHO05D005050 7.5e-77 291.2 173 80.9
ClCG05G016150 Citrullus lanatus HOM05D004383 ORTHO05D005050 1.3e-76 290.4 173 82.7
ECA233G1452 Erigeron canadensis HOM05D004383 ORTHO05D005050 1.3e-76 290.4 173 80.9
HanXRQChr12g0370101 Helianthus annuus HOM05D004383 ORTHO05D005050 1.3e-76 290.4 173 80.9
TAR625G0171 Trochodendron aralioides HOM05D004383 ORTHO05D005050 1.3e-76 290.4 177 79.1
TAR625G1552 Trochodendron aralioides HOM05D004383 ORTHO05D005050 1.3e-76 290.4 177 79.1
Peaxi162Scf00045g01943 Petunia axillaris HOM05D004383 ORTHO05D005050 1.7e-76 290.0 170 82.9
Rhsim07G0166500 Rhododendron simsii HOM05D004383 ORTHO05D005050 1.7e-76 290.0 199 73.9
Lsat_1_v5_gn_8_16540 Lactuca sativa HOM05D004383 ORTHO05D005050 2.2e-76 289.7 168 83.3
Hund25610 Selenicereus undatus HOM05D004383 ORTHO05D005050 2.2e-76 289.7 171 81.9
Phvul.001G042400 Phaseolus vulgaris HOM05D004383 ORTHO05D005050 6.3e-76 288.1 169 84.0
AUR62024788 Chenopodium quinoa HOM05D004383 ORTHO05D005050 8.3e-76 287.7 175 77.7
Sopen08g002600 Solanum pennellii HOM05D004383 ORTHO05D005050 8.3e-76 287.7 170 83.5
PGSC0003DMG400026285 Solanum tuberosum HOM05D004383 ORTHO05D005050 8.3e-76 287.7 170 83.5
AUR62032433 Chenopodium quinoa HOM05D004383 ORTHO05D005050 1.1e-75 287.3 175 77.7
Sed0009310 Sechium edule HOM05D004383 ORTHO05D005050 1.4e-75 287.0 173 81.5
VMungo0647G1739 Vigna mungo HOM05D004383 ORTHO05D005050 1.4e-75 287.0 169 84.0
CAN.G285.20 Capsicum annuum HOM05D004383 ORTHO05D005050 1.8e-75 286.6 170 82.9
Nitab4.5_0000264g0060 Nicotiana tabacum HOM05D004383 ORTHO05D005050 2.4e-75 286.2 170 83.5
QL02p018464 Quercus lobata HOM05D004383 ORTHO05D005050 3.2e-75 285.8 162 86.4
Lalb_Chr24g0401921 Lupinus albus HOM05D004383 ORTHO05D005050 5.4e-75 285.0 175 80.0
Solyc08g006650.3 Solanum lycopersicum HOM05D004383 ORTHO05D005050 7.0e-75 284.6 170 82.9
SGA_v2.0_scaffold4G02162 Striga asiatica HOM05D004383 ORTHO05D005050 7.0e-75 284.6 175 81.1
MSTRG.13961 Avicennia marina HOM05D004383 ORTHO05D005050 2.7e-74 282.7 173 79.8
Nn1g03128 Nelumbo nucifera HOM05D004383 ORTHO05D005050 3.5e-74 282.3 171 81.9
CSS0025027 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 4.6e-74 282.0 168 81.5
THA.LOC104824960 Tarenaya hassleriana HOM05D004383 ORTHO05D005050 5.9e-74 281.6 175 77.7
SGA_v2.0_scaffold169G38599 Striga asiatica HOM05D004383 ORTHO05D005050 1.0e-73 280.8 175 79.4
Ciclev10009603m.g Citrus clementina HOM05D004383 ORTHO05D005050 1.3e-73 280.4 161 85.1
THA.LOC104799028 Tarenaya hassleriana HOM05D004383 ORTHO05D005050 1.3e-73 280.4 175 77.7
AL6G21360 Arabidopsis lyrata HOM05D004383 ORTHO05D005050 1.7e-73 280.0 175 78.3
AT5G10780 Arabidopsis thaliana HOM05D004383 ORTHO05D005050 1.7e-73 280.0 175 78.3
Glyma.17G222100 Glycine max HOM05D004383 ORTHO05D005050 1.7e-73 280.0 169 82.2
Thhalv10014802m.g Eutrema salsugineum HOM05D004383 ORTHO05D005050 2.3e-73 279.6 175 77.7
Aa31LG3G16320 Aethionema arabicum HOM05D004383 ORTHO05D005050 2.9e-73 279.3 171 78.4
EL10Ac2g02480 Beta vulgaris HOM05D004383 ORTHO05D005050 2.9e-73 279.3 170 78.2
Cpa.g.sc148.37 Carica papaya HOM05D004383 ORTHO05D005050 3.9e-73 278.9 171 81.9
Lj6g0009294 Lotus japonicus HOM05D004383 ORTHO05D005050 3.9e-73 278.9 170 80.6
Sp6g32680 Schrenkiella parvula HOM05D004383 ORTHO05D005050 3.9e-73 278.9 175 77.1
BcaB01g05499 Brassica carinata HOM05D004383 ORTHO05D005050 6.6e-73 278.1 175 77.1
BcaB01g06278 Brassica carinata HOM05D004383 ORTHO05D005050 6.6e-73 278.1 175 76.6
Carub.0006s0928 Capsella rubella HOM05D004383 ORTHO05D005050 6.6e-73 278.1 175 77.7
Ah.12g060630 Amaranthus hybridus HOM05D004383 ORTHO05D005050 1.1e-72 277.3 177 76.8
Psat6g025120 Pisum sativum HOM05D004383 ORTHO05D005050 1.1e-72 277.3 168 82.1
TPR.G38877 Trifolium pratense HOM05D004383 ORTHO05D005050 1.1e-72 277.3 167 82.6
A03p04760 Brassica napus HOM05D004383 ORTHO05D005050 1.5e-72 276.9 176 77.3
C03p05470 Brassica napus HOM05D004383 ORTHO05D005050 1.5e-72 276.9 174 77.0
Ca_13075_v3 Cicer arietinum L. HOM05D004383 ORTHO05D005050 1.5e-72 276.9 167 82.6
Migut.E01443 Erythranthe guttata HOM05D004383 ORTHO05D005050 1.9e-72 276.6 172 79.1
Glyma.14G103800 Glycine max HOM05D004383 ORTHO05D005050 1.9e-72 276.6 169 81.1
CARHR202520 Cardamine hirsuta HOM05D004383 ORTHO05D005050 2.5e-72 276.2 175 77.1
HanXRQChr07g0201211 Helianthus annuus HOM05D004383 ORTHO05D005050 2.5e-72 276.2 179 76.5
Sabra06G0208900 Salix brachista HOM05D004383 ORTHO05D005050 2.5e-72 276.2 163 81.6
Medtr1g013660 Medicago truncatula HOM05D004383 ORTHO05D005050 3.3e-72 275.8 168 81.0
Sabra18G0020200 Salix brachista HOM05D004383 ORTHO05D005050 3.3e-72 275.8 164 80.5
MD08G1052600 Malus domestica HOM05D004383 ORTHO05D005050 4.3e-72 275.4 175 81.7
Oeu010290.1 Olea europaea HOM05D004383 ORTHO05D005050 4.3e-72 275.4 173 75.1
BcaB05g21506 Brassica carinata HOM05D004383 ORTHO05D005050 5.6e-72 275.0 170 77.1
BraA03t09816Z Brassica rapa HOM05D004383 ORTHO05D005050 1.2e-71 273.9 176 76.7
A02p00660 Brassica napus HOM05D004383 ORTHO05D005050 2.8e-71 272.7 171 78.4
vmacro05117 Vaccinium macrocarpon HOM05D004383 ORTHO05D005050 4.7e-71 271.9 166 79.5
BcaC03g13332 Brassica carinata HOM05D004383 ORTHO05D005050 6.1e-71 271.6 171 77.8
C02p04660 Brassica napus HOM05D004383 ORTHO05D005050 6.1e-71 271.6 171 77.8
BraA02t05050Z Brassica rapa HOM05D004383 ORTHO05D005050 8.0e-71 271.2 171 77.8
Haze_21384 Corylus avellana HOM05D004383 ORTHO05D005050 8.0e-71 271.2 194 72.7
PSO017G0706 Papaver somniferum HOM05D004383 ORTHO05D005050 8.0e-71 271.2 175 78.3
PSO170G1218 Papaver somniferum HOM05D004383 ORTHO05D005050 8.0e-71 271.2 175 78.3
Nitab4.5_0001362g0040 Nicotiana tabacum HOM05D004383 ORTHO05D005050 1.4e-70 270.4 163 82.2
Migut.A00383 Erythranthe guttata HOM05D004383 ORTHO05D005050 4.0e-70 268.9 175 76.6
ATR0580G398 Amborella trichopoda HOM05D004383 ORTHO05D005050 6.8e-70 268.1 167 80.2
DCAR_003054 Daucus carota HOM05D004383 ORTHO05D005050 3.4e-69 265.8 159 81.8
SEGI_36915 Sequoiadendron giganteum HOM05D004383 ORTHO05D005050 9.8e-69 264.2 167 75.4
SalBow8G1520 Salvia bowleyana HOM05D004383 ORTHO05D005050 1.7e-68 263.5 162 78.4
CDE02G0236 Ceratophyllum demersum HOM05D004383 ORTHO05D005050 2.9e-68 262.7 170 77.1
BolC3t13057H Brassica oleracea HOM05D004383 ORTHO05D005050 4.9e-68 261.9 162 78.4
MBI14_g31383_MAGBIO Magnolia biondii HOM05D004383 ORTHO05D005050 8.3e-68 261.2 169 76.9
Oeu021906.1 Olea europaea HOM05D004383 ORTHO05D005050 8.3e-68 261.2 162 77.2
CDE05G2494 Ceratophyllum demersum HOM05D004383 ORTHO05D005050 1.4e-67 260.4 167 77.8
BolC2t06425H Brassica oleracea HOM05D004383 ORTHO05D003478 2.0e-66 256.5 163 77.3
unitig_32.g11121 Utricularia gibba HOM05D004383 ORTHO05D005050 6.0e-66 255.0 162 78.4
Os03g0360500 Oryza sativa ssp. japonica HOM05D004383 ORTHO05D005050 8.6e-65 251.1 171 72.5
Zm00001eb394360 Zea mays HOM05D004383 ORTHO05D005050 9.5e-64 247.7 168 71.4
vmacro11269 Vaccinium macrocarpon HOM05D004383 ORTHO05D005050 2.1e-63 246.5 256 54.3
AagrBONN_evm.TU.Sc2ySwM_368.2778 Anthoceros agrestis HOM05D004383 ORTHO05D005050 6.8e-62 241.5 178 68.5
Dinv10290 Davidia involucrata HOM05D004383 ORTHO05D005050 1.5e-61 240.4 148 79.7
SMO367G0045 Selaginella moellendorffii HOM05D004383 ORTHO05D005050 2.9e-60 236.1 165 70.3
Sc23g0006160 Simmondsia chinensis HOM05D004383 ORTHO05D005050 2.4e-59 233.0 140 82.1
Mapoly0039s0015 Marchantia polymorpha HOM05D004383 ORTHO05D005050 1.2e-58 230.7 169 66.9
Actinidia10531 Actinidia chinensis HOM05D004383 ORTHO05D005050 4.6e-58 228.8 171 70.8
Pp3c18_15950 Physcomitrium patens HOM05D004383 ORTHO05D005050 1.9e-56 223.4 166 66.3
BcaNung06638 Brassica carinata HOM05D004383 ORTHO05D005050 4.7e-47 192.2 134 71.6
CBR_g29297 Chara braunii HOM05D004383 ORTHO05D005050 4.9e-44 182.2 168 54.2
Aqoxy7G03322 Aquilegia oxysepala HOM05D004383 ORTHO05D005050 3.6e-39 166.0 161 56.5
Dinv01903 Davidia involucrata HOM05D004383 ORTHO05D005050 4.9e-36 155.6 98 77.6
HPP92_021944 Vanilla planifolia HOM05D004383 ORTHO05D005050 1.3e-31 141.0 105 68.6
TAR383G0062 Trochodendron aralioides HOM05D004383 ORTHO05D005050 2.8e-31 139.8 94 73.4
HPP92_021971 Vanilla planifolia HOM05D004383 ORTHO05D005050 1.4e-30 137.5 80 85.0
PRCOL_00000905 Prasinoderma coloniale HOM05D004383 ORTHO05D005050 1.4e-27 127.5 149 43.6
MCO09G762 Micromonas commoda HOM05D004383 ORTHO05D005050 1.2e-26 124.4 179 39.7
TAR383G0705 Trochodendron aralioides HOM05D004383 ORTHO05D005050 6.0e-26 122.1 67 85.1
CSS0012906 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 3.4e-21 106.3 54 92.6
DCAR_031730 Daucus carota HOM05D004383 ORTHO05D005050 3.4e-21 106.3 100 59.0
arahy.Tifrunner.gnm1.ann1.76P32W Arachis hypogaea HOM05D004383 ORTHO05D005050 1.0e-20 104.8 63 81.0
arahy.Tifrunner.gnm1.ann1.90HH72 Arachis hypogaea HOM05D004383 ORTHO05D005050 1.0e-20 104.8 63 81.0
Medtr8g027900 Medicago truncatula HOM05D000337 ORTHO05D000297 1.0e-20 104.8 63 84.1
CSS0013447 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 1.7e-20 104.0 57 84.2
DCAR_030622 Daucus carota HOM05D001936 ORTHO05D005050 1.5e-16 90.9 83 61.4
Cfa024789 Carpinus fangiana HOM05D004383 ORTHO05D005050 9.6e-16 88.2 145 37.2
Cre07.g351700 Chlamydomonas reinhardtii HOM05D004383 ORTHO05D005050 1.4e-14 84.3 144 34.0
Lalb_Chr15g0080471 Lupinus albus HOM05D004383 ORTHO05D005050 2.0e-13 80.5 90 50.0
arahy.Tifrunner.gnm1.ann1.54XXT5 Arachis hypogaea HOM05D004383 ORTHO05D005050 8.4e-12 75.1 59 67.8
Oeu048647.1 Olea europaea HOM05D004383 ORTHO05D005050 8.4e-12 75.1 56 64.3
Lalb_Chr15g0078021 Lupinus albus HOM05D004383 ORTHO05D005050 1.2e-10 71.2 88 47.7
Lalb_Chr10g0093521 Lupinus albus HOM05D004383 ORTHO05D005050 6.1e-10 68.9 38 89.5
Atru.chr7.2585 Acer truncatum HOM05D004383 ORTHO05D005050 7.9e-10 68.6 45 71.1
Atru.chr7.2578 Acer truncatum HOM05D004610 ORTHO05D001148 1.0e-09 68.2 51 66.7
MD10G1133700 Malus domestica HOM05D004383 ORTHO05D005050 5.1e-09 65.9 55 61.8
Lalb_Chr01g0013281 Lupinus albus HOM05D004383 ORTHO05D005050 8.7e-09 65.1 50 66.0
RcHm_v2.0_Chr3g0494951 Rosa chinensis HOM05D004383 ORTHO05D005050 1.9e-08 63.9 64 53.1
MD10G1176800 Malus domestica HOM05D004383 ORTHO05D005050 7.4e-08 62.0 42 69.0


User provided reference genes

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