Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN14G2921 Fragaria x ananassa HOM05D005299 ORTHO05D006621 1.3e-204 716.1 348 100.0
FvH4_6g38090 Fragaria vesca HOM05D005299 ORTHO05D006621 1.1e-203 713.0 348 99.7
FAN05G0697 Fragaria x ananassa HOM05D005299 ORTHO05D006621 7.1e-198 693.7 348 96.8
FAN02G4296 Fragaria x ananassa HOM05D005299 ORTHO05D006621 1.2e-197 693.0 348 97.1
RcHm_v2.0_Chr2g0151151 Rosa chinensis HOM05D005299 ORTHO05D006621 7.6e-184 647.1 348 89.4
MD09G1154100 Malus domestica HOM05D005299 ORTHO05D006621 4.8e-154 548.1 348 75.3
Prupe.3G170900 Prunus persica HOM05D005299 ORTHO05D006621 1.4e-153 546.6 348 74.7
QL08p043914 Quercus lobata HOM05D005299 ORTHO05D006621 4.2e-142 508.4 346 70.2
Haze_13488 Corylus avellana HOM05D005299 ORTHO05D006621 8.8e-140 500.7 346 68.2
Cfa022915 Carpinus fangiana HOM05D005299 ORTHO05D006621 1.3e-138 496.9 346 67.6
COL.COLO4_33736 Corchorus olitorius HOM05D005299 ORTHO05D006621 1.1e-137 493.8 346 68.2
Ciclev10031926m.g Citrus clementina HOM05D005299 ORTHO05D006621 1.1e-134 483.8 346 65.6
Potri.002G168500 Populus trichocarpa HOM05D005299 ORTHO05D006621 5.5e-134 481.5 348 65.2
Duzib187G1515 Durio zibethinus HOM05D005299 ORTHO05D006621 7.2e-134 481.1 346 67.3
Gohir.A05G378300 Gossypium hirsutum HOM05D005299 ORTHO05D006621 7.2e-134 481.1 347 67.4
Atru.chr11.1755 Acer truncatum HOM05D005299 ORTHO05D006621 1.2e-133 480.3 346 65.3
Thecc.01G160700 Theobroma cacao HOM05D005299 ORTHO05D006621 2.1e-133 479.6 346 66.5
PGR142G4033 Punica granatum HOM05D005299 ORTHO05D006621 2.7e-133 479.2 346 66.2
Gohir.D04G037200 Gossypium hirsutum HOM05D005299 ORTHO05D006621 8.0e-133 477.6 347 66.9
Gorai.012G042000 Gossypium raimondii HOM05D005299 ORTHO05D006621 8.0e-133 477.6 347 66.9
CiPaw.04G135600 Carya illinoinensis HOM05D005299 ORTHO05D006621 5.2e-132 474.9 346 64.7
Sabra02G0143400 Salix brachista HOM05D005299 ORTHO05D006621 8.8e-132 474.2 348 64.4
Cpa.g.sc50.76 Carica papaya HOM05D005299 ORTHO05D006621 1.1e-131 473.8 346 66.5
Manes.01G128400 Manihot esculenta HOM05D005299 ORTHO05D006621 1.1e-131 473.8 348 64.4
CSS0023426 Camellia sinensis var. sinensis HOM05D005299 ORTHO05D006621 1.5e-131 473.4 347 65.7
Hma1.2p1_0036F.1_g023590 Hydrangea macrophylla HOM05D005299 ORTHO05D006621 2.0e-131 473.0 347 63.7
CANSAT64G0352 Cannabis sativa HOM05D005299 ORTHO05D006621 2.2e-130 469.5 346 65.0
Phvul.008G190800 Phaseolus vulgaris HOM05D005299 ORTHO05D006621 2.4e-129 466.1 350 64.0
GSVIVG01000796001 Vitis vinifera HOM05D005299 ORTHO05D006621 2.0e-128 463.0 314 68.5
Rhsim06G0118500 Rhododendron simsii HOM05D005299 ORTHO05D006621 3.8e-127 458.8 348 62.4
Sed0016784 Sechium edule HOM05D005299 ORTHO05D006621 5.0e-127 458.4 349 62.5
Gohir.A05G378200 Gossypium hirsutum HOM05D005299 ORTHO05D006621 1.1e-126 457.2 347 64.6
LjContig00310g0013825 Lotus japonicus HOM05D005299 ORTHO05D006621 1.5e-126 456.8 350 61.1
Glyma.14G027500 Glycine max HOM05D005299 ORTHO05D006621 4.2e-126 455.3 350 62.6
ClCG02G018370 Citrullus lanatus HOM05D005299 ORTHO05D006621 5.5e-126 454.9 349 64.2
Gorai.012G042100 Gossypium raimondii HOM05D005299 ORTHO05D006621 9.4e-126 454.1 347 63.4
Cc05_g09280 Coffea canephora HOM05D005299 ORTHO05D006621 2.1e-125 453.0 347 62.0
MBI07_g30205_MAGBIO Magnolia biondii HOM05D005299 ORTHO05D006621 2.7e-125 452.6 319 67.7
Lj1P624T16 Lonicera japonica HOM05D005299 ORTHO05D006621 8.0e-125 451.1 334 65.3
VMungo0647G0660 Vigna mungo HOM05D005299 ORTHO05D006621 1.0e-124 450.7 346 62.4
Ca_06288_v3 Cicer arietinum L. HOM05D005299 ORTHO05D006621 3.0e-124 449.1 314 65.3
Peaxi162Scf00154g00511 Petunia axillaris HOM05D005299 ORTHO05D006621 3.0e-124 449.1 318 65.1
Eucgr.K01197 Eucalyptus grandis HOM05D005299 ORTHO05D006621 6.8e-124 448.0 348 61.8
MELO3C019690.2 Cucumis melo HOM05D005299 ORTHO05D006621 2.0e-123 446.4 346 62.7
Aqoxy4G00177 Aquilegia oxysepala HOM05D005299 ORTHO05D006621 3.4e-123 445.7 346 61.6
CsaV3_6G015800 Cucumis sativus L. HOM05D005299 ORTHO05D006621 5.7e-123 444.9 342 62.9
Sopen07g029300 Solanum pennellii HOM05D005299 ORTHO05D006621 7.5e-123 444.5 347 60.5
PGSC0003DMG400017296 Solanum tuberosum HOM05D005299 ORTHO05D006621 7.5e-123 444.5 319 63.6
CAN.G1191.5 Capsicum annuum HOM05D005299 ORTHO05D006621 1.3e-122 443.7 333 60.7
CAN.G585.55 Capsicum annuum HOM05D005299 ORTHO05D006621 1.3e-122 443.7 347 61.1
Nitab4.5_0001675g0010 Nicotiana tabacum HOM05D005299 ORTHO05D006621 2.2e-122 443.0 339 60.8
TAR624G0522 Trochodendron aralioides HOM05D005299 ORTHO05D006621 2.2e-122 443.0 347 60.5
Nitab4.5_0001402g0040 Nicotiana tabacum HOM05D005299 ORTHO05D006621 4.8e-122 441.8 332 59.0
Solyc07g055940.3 Solanum lycopersicum HOM05D005299 ORTHO05D006621 2.4e-121 439.5 339 60.8
COL.COLO4_33735 Corchorus olitorius HOM05D005299 ORTHO05D006621 5.4e-121 438.3 301 68.4
Oeu006146.1 Olea europaea HOM05D005299 ORTHO05D006621 5.4e-121 438.3 349 62.2
arahy.Tifrunner.gnm1.ann1.W6YWPQ Arachis hypogaea HOM05D005299 ORTHO05D006621 7.0e-121 438.0 363 59.8
MSTRG.15054 Avicennia marina HOM05D005299 ORTHO05D006621 7.0e-121 438.0 348 60.6
Medtr5g091790 Medicago truncatula HOM05D005299 ORTHO05D006621 7.0e-121 438.0 292 67.5
TPR.G12682 Trifolium pratense HOM05D005299 ORTHO05D006621 9.1e-121 437.6 359 59.6
Lalb_Chr04g0248721 Lupinus albus HOM05D005299 ORTHO05D006621 7.7e-120 434.5 362 58.0
DCAR_009793 Daucus carota HOM05D005299 ORTHO05D006621 1.7e-119 433.3 349 60.2
Nn3g20966 Nelumbo nucifera HOM05D005299 ORTHO05D006621 1.7e-119 433.3 340 61.2
arahy.Tifrunner.gnm1.ann1.L8S1IT Arachis hypogaea HOM05D005299 ORTHO05D006621 6.5e-119 431.4 364 59.9
Psat2g014680 Pisum sativum HOM05D005299 ORTHO05D006621 1.5e-118 430.3 334 60.8
SGA_v2.0_scaffold130G34359 Striga asiatica HOM05D005299 ORTHO05D006621 1.5e-118 430.3 350 58.9
Dinv32183 Davidia involucrata HOM05D005299 ORTHO05D006621 1.6e-117 426.8 301 65.8
Migut.M00515 Erythranthe guttata HOM05D005299 ORTHO05D006621 3.6e-117 425.6 355 58.0
PSO675G1896 Papaver somniferum HOM05D005299 ORTHO05D006621 3.6e-117 425.6 330 63.3
PSO541G3070 Papaver somniferum HOM05D005299 ORTHO05D006621 1.8e-116 423.3 334 62.0
Glyma.02G287500 Glycine max HOM05D005299 ORTHO05D006621 1.5e-115 420.2 352 59.4
SalBow8G4073 Salvia bowleyana HOM05D005299 ORTHO05D006621 9.8e-115 417.5 328 59.5
Lsat_1_v5_gn_8_32101 Lactuca sativa HOM05D005299 ORTHO05D006621 2.2e-114 416.4 350 58.3
ATR0737G056 Amborella trichopoda HOM05D005299 ORTHO05D006621 8.3e-114 414.5 336 56.8
THA.LOC104803188 Tarenaya hassleriana HOM05D005299 ORTHO05D006621 3.5e-112 409.1 346 57.5
Sc04g0008260 Simmondsia chinensis HOM05D005299 ORTHO05D006621 5.9e-112 408.3 347 55.9
HanXRQChr12g0369651 Helianthus annuus HOM05D005299 ORTHO05D006621 5.6e-110 401.7 326 57.1
AT3G58800 Arabidopsis thaliana HOM05D005299 ORTHO05D006621 2.1e-109 399.8 346 57.8
Carub.0005s2558 Capsella rubella HOM05D005299 ORTHO05D006621 2.1e-109 399.8 348 58.0
HPP92_007777 Vanilla planifolia HOM05D005299 ORTHO05D006621 3.6e-109 399.1 293 64.5
Aa31LG10G13380 Aethionema arabicum HOM05D005299 ORTHO05D006621 3.0e-108 396.0 287 63.4
unitig_747.g21613 Utricularia gibba HOM05D005299 ORTHO05D006621 1.1e-105 387.5 348 51.7
CARHR169190 Cardamine hirsuta HOM05D005299 ORTHO05D006621 3.2e-105 386.0 347 54.5
AL5G40590 Arabidopsis lyrata HOM05D005299 ORTHO05D006621 2.7e-104 382.9 346 55.5
BolC8t51012H Brassica oleracea HOM05D005299 ORTHO05D006621 1.0e-103 380.9 348 52.6
BcaC07g40297 Brassica carinata HOM05D005299 ORTHO05D006621 1.3e-103 380.6 348 52.9
C08p34130 Brassica napus HOM05D005299 ORTHO05D006621 1.3e-103 380.6 348 52.9
Sp5g04040 Schrenkiella parvula HOM05D005299 ORTHO05D006621 1.7e-103 380.2 326 57.1
Ah.01g004630 Amaranthus hybridus HOM05D005299 ORTHO05D006621 1.9e-102 376.7 348 54.3
A09p51350 Brassica napus HOM05D005299 ORTHO05D006621 5.6e-102 375.2 349 53.0
BraA09t40576Z Brassica rapa HOM05D005299 ORTHO05D006621 5.6e-102 375.2 349 53.0
Thhalv10006079m.g Eutrema salsugineum HOM05D005299 ORTHO05D006621 7.3e-102 374.8 348 54.3
Hund04227 Selenicereus undatus HOM05D005299 ORTHO05D006621 1.8e-100 370.2 336 53.6
SEGI_33032 Sequoiadendron giganteum HOM05D005299 ORTHO05D006621 1.8e-100 370.2 348 51.1
BcaC07g40228 Brassica carinata HOM05D005299 ORTHO05D006621 2.3e-100 369.8 350 52.3
Peaxi162Scf00035g00313 Petunia axillaris HOM05D005299 ORTHO05D006621 5.2e-100 368.6 292 59.6
EL10Ac6g14080 Beta vulgaris HOM05D005299 ORTHO05D006621 1.2e-99 367.5 340 54.1
Nitab4.5_0013539g0010 Nicotiana tabacum HOM05D005299 ORTHO05D006621 1.5e-99 367.1 334 54.5
AUR62042721 Chenopodium quinoa HOM05D005299 ORTHO05D006621 4.9e-98 362.1 355 51.3
SHI07041 Sapria himalayana HOM05D005299 ORTHO05D006621 2.7e-96 356.3 325 52.0
AUR62028463 Chenopodium quinoa HOM05D005299 ORTHO05D006621 3.0e-95 352.8 350 51.7
ECA233G0136 Erigeron canadensis HOM05D005299 ORTHO05D001423 3.4e-91 339.3 254 61.8
CSS0024030 Camellia sinensis var. sinensis HOM05D005299 ORTHO05D006621 8.6e-87 324.7 330 50.9
HPP92_007800 Vanilla planifolia HOM05D005299 ORTHO05D006621 6.2e-85 318.5 276 57.6
MD17G1140700 Malus domestica HOM05D005299 ORTHO05D006621 2.2e-82 310.1 316 53.5
Nitab4.5_0002027g0150 Nicotiana tabacum HOM05D005299 ORTHO05D006621 1.1e-78 297.7 218 59.6
Zm00001eb153130 Zea mays HOM05D005299 ORTHO05D006621 1.6e-77 293.9 288 49.3
Os01g0748200 Oryza sativa ssp. japonica HOM05D005299 ORTHO05D006621 2.8e-77 293.1 332 44.9
Os02g0230200 Oryza sativa ssp. japonica HOM05D005299 ORTHO05D006621 6.2e-77 292.0 296 49.0
Zm00001eb204700 Zea mays HOM05D005299 ORTHO05D006621 3.4e-75 286.2 300 47.7
SMO143G0231 Selaginella moellendorffii HOM05D005299 ORTHO05D006621 6.4e-74 282.0 287 45.3
Mapoly0101s0004 Marchantia polymorpha HOM05D005299 ORTHO05D006621 9.6e-70 268.1 347 39.5
Pp3c3_20150 Physcomitrium patens HOM05D005299 ORTHO05D006621 3.9e-63 246.1 337 38.6
HanXRQChr12g0369671 Helianthus annuus HOM05D005299 ORTHO05D006621 2.4e-60 236.9 190 54.7
Gohir.D04G037301 Gossypium hirsutum HOM05D005299 ORTHO05D006621 6.9e-52 208.8 152 62.5
AagrBONN_evm.TU.Sc2ySwM_344.3512 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.5e-51 207.6 292 38.0
AagrBONN_evm.TU.Sc2ySwM_228.4947 Anthoceros agrestis HOM05D005299 ORTHO05D006621 4.2e-49 199.5 296 38.5
AagrBONN_evm.TU.Sc2ySwM_344.2434 Anthoceros agrestis HOM05D005299 ORTHO05D006621 7.1e-49 198.7 287 37.6
Pp3c1_7220 Physcomitrium patens HOM05D005299 ORTHO05D006621 9.3e-49 198.4 282 36.2
AagrBONN_evm.TU.Sc2ySwM_362.595 Anthoceros agrestis HOM05D005299 ORTHO05D006621 4.6e-48 196.1 308 36.7
AagrBONN_evm.TU.Sc2ySwM_117.611 Anthoceros agrestis HOM05D005299 ORTHO05D006621 7.9e-48 195.3 334 34.4
AagrBONN_evm.TU.Sc2ySwM_228.4866 Anthoceros agrestis HOM05D005299 ORTHO05D006621 3.7e-45 186.4 320 34.7
AagrBONN_evm.TU.Sc2ySwM_228.2643 Anthoceros agrestis HOM05D005299 ORTHO05D006621 7.6e-43 178.7 292 37.3
AagrBONN_evm.TU.Sc2ySwM_344.1994 Anthoceros agrestis HOM05D005299 ORTHO05D006621 3.2e-41 173.3 290 32.1
AagrBONN_evm.TU.Sc2ySwM_362.1230 Anthoceros agrestis HOM05D005299 ORTHO05D006621 4.2e-41 172.9 248 37.9
SMO356G0525 Selaginella moellendorffii HOM05D005299 ORTHO05D006621 1.2e-40 171.4 284 33.1
AagrBONN_evm.TU.Sc2ySwM_117.3041__3042 Anthoceros agrestis HOM05D005299 ORTHO05D006621 2.1e-40 170.6 293 34.5
SMO304G0008 Selaginella moellendorffii HOM05D005299 ORTHO05D006621 1.8e-39 167.5 292 32.9
AagrBONN_evm.TU.Sc2ySwM_362.723 Anthoceros agrestis HOM05D005299 ORTHO05D006621 3.0e-39 166.8 260 35.0
AagrBONN_evm.TU.Sc2ySwM_362.647 Anthoceros agrestis HOM05D005299 ORTHO05D006621 6.7e-39 165.6 296 34.5
AagrBONN_evm.TU.Sc2ySwM_368.2564 Anthoceros agrestis HOM05D005299 ORTHO05D006621 2.2e-37 160.6 301 31.6
AagrBONN_evm.TU.Sc2ySwM_228.5465 Anthoceros agrestis HOM05D005299 ORTHO05D006621 2.8e-37 160.2 304 33.6
AagrBONN_evm.TU.Sc2ySwM_344.988 Anthoceros agrestis HOM05D005299 ORTHO05D006621 5.3e-36 156.0 286 33.2
AagrBONN_evm.TU.Sc2ySwM_368.682 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.5e-35 154.5 286 32.9
Cre16.g692650 Chlamydomonas reinhardtii HOM05D005299 ORTHO05D006621 7.9e-32 142.1 317 29.3
AagrBONN_evm.TU.Sc2ySwM_368.683 Anthoceros agrestis HOM05D005299 ORTHO05D006621 2.6e-30 137.1 286 30.1
AagrBONN_evm.TU.Sc2ySwM_368.684 Anthoceros agrestis HOM05D005299 ORTHO05D006621 2.2e-29 134.0 270 31.5
MCO16G314 Micromonas commoda HOM05D005299 ORTHO05D006621 2.8e-21 107.1 280 27.9
CBR_g37320 Chara braunii HOM05D000019 ORTHO05D000002 1.7e-13 81.3 63 54.0
Cre04.g231712 Chlamydomonas reinhardtii HOM05D005299 ORTHO05D006621 2.8e-13 80.5 157 32.5
Cre04.g231810 Chlamydomonas reinhardtii HOM05D005299 ORTHO05D006621 8.2e-13 79.0 88 38.6
HanXRQChr17g0539561 Helianthus annuus HOM05D005299 ORTHO05D006621 2.7e-11 73.9 64 53.1
ECA233G3003 Erigeron canadensis HOM05D000038 ORTHO05D000423 5.5e-09 66.2 96 38.5


User provided reference genes

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