Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN14G2914 Fragaria x ananassa HOM05D000462 ORTHO05D005846 1.6e-79 299.3 143 100.0
FvH4_6g35582 Fragaria vesca HOM05D000462 ORTHO05D005846 4.6e-79 297.7 143 99.3
RcHm_v2.0_Chr2g0147411 Rosa chinensis HOM05D000462 ORTHO05D005846 4.4e-69 264.6 143 85.3
RcHm_v2.0_Chr1g0342401 Rosa chinensis HOM05D000462 ORTHO05D005846 3.8e-49 198.4 141 64.5
RcHm_v2.0_Chr2g0147401 Rosa chinensis HOM05D000462 ORTHO05D005846 1.2e-47 193.4 142 63.4
FvH4_6g35581 Fragaria vesca HOM05D000462 ORTHO05D005846 1.5e-45 186.4 141 62.4
RcHm_v2.0_Chr1g0342491 Rosa chinensis HOM05D000462 ORTHO05D005846 1.5e-45 186.4 141 62.4
FvH4_7g07720 Fragaria vesca HOM05D000462 ORTHO05D005846 2.4e-43 179.1 142 61.3
FAN06G2574 Fragaria x ananassa HOM05D000462 ORTHO05D005846 2.4e-43 179.1 142 61.3
FAN03G2319 Fragaria x ananassa HOM05D000462 ORTHO05D005846 2.0e-42 176.0 142 59.9
FAN10G1386 Fragaria x ananassa HOM05D000462 ORTHO05D005846 3.5e-42 175.3 142 60.6
MD02G1233300 Malus domestica HOM05D000462 ORTHO05D005846 1.1e-40 170.2 140 56.4
MD07G1080300 Malus domestica HOM05D000462 ORTHO05D005846 1.5e-40 169.9 140 56.4
RcHm_v2.0_Chr1g0342371 Rosa chinensis HOM05D000462 ORTHO05D005846 2.5e-40 169.1 128 62.5
Prupe.2G100300 Prunus persica HOM05D000462 ORTHO05D005846 1.6e-39 166.4 141 53.9
Prupe.2G104700 Prunus persica HOM05D000462 ORTHO05D005846 1.4e-38 163.3 140 52.9
Prupe.2G104300 Prunus persica HOM05D000462 ORTHO05D005846 1.2e-37 160.2 140 52.1
RcHm_v2.0_Chr1g0342511 Rosa chinensis HOM05D000462 ORTHO05D005846 2.0e-37 159.5 109 67.0
Cfa010675 Carpinus fangiana HOM05D000462 ORTHO05D005846 7.5e-37 157.5 140 57.1
Haze_03590 Corylus avellana HOM05D000462 ORTHO05D005846 3.7e-36 155.2 147 54.4
Dinv43525 Davidia involucrata HOM05D000462 ORTHO05D005846 3.1e-35 152.1 138 52.2
FAN06G0093 Fragaria x ananassa HOM05D000462 ORTHO05D005846 3.1e-35 152.1 105 67.6
GSVIVG01019293001 Vitis vinifera HOM05D000462 ORTHO05D005846 5.9e-34 147.9 140 50.7
Atru.chr2.1657 Acer truncatum HOM05D000462 ORTHO05D005846 6.6e-33 144.4 137 46.0
Eucgr.E01753 Eucalyptus grandis HOM05D000462 ORTHO05D005846 1.5e-32 143.3 131 55.7
TAR374G1078 Trochodendron aralioides HOM05D000462 ORTHO05D005846 2.5e-32 142.5 125 53.6
CSS0047566 Camellia sinensis var. sinensis HOM05D000462 ORTHO05D005846 9.5e-32 140.6 128 48.4
PGSC0003DMG400042622 Solanum tuberosum HOM05D000462 ORTHO05D005846 9.5e-32 140.6 133 48.9
CSS0030224 Camellia sinensis var. sinensis HOM05D000462 ORTHO05D005846 4.7e-31 138.3 128 47.7
CAN.G992.17 Capsicum annuum HOM05D000462 ORTHO05D005846 8.0e-31 137.5 138 47.1
Actinidia21593 Actinidia chinensis HOM05D000462 ORTHO05D005846 1.0e-30 137.1 132 45.5
CSS0023532 Camellia sinensis var. sinensis HOM05D000462 ORTHO05D005846 1.8e-30 136.3 132 47.7
Peaxi162Scf00907g00221 Petunia axillaris HOM05D000462 ORTHO05D005846 2.3e-30 136.0 137 46.0
CiPaw.13G054400 Carya illinoinensis HOM05D000462 ORTHO05D005846 3.0e-30 135.6 139 51.8
PGSC0003DMG400001798 Solanum tuberosum HOM05D000462 ORTHO05D005846 4.0e-30 135.2 125 52.0
PGSC0003DMG400020979 Solanum tuberosum HOM05D000462 ORTHO05D005846 4.0e-30 135.2 125 52.0
MELO3C006216.2 Cucumis melo HOM05D000462 ORTHO05D005846 2.0e-29 132.9 141 49.6
Rhsim07G0047200 Rhododendron simsii HOM05D000462 ORTHO05D005846 4.4e-29 131.7 138 44.9
EL10Ac4g07924 Beta vulgaris HOM05D000462 ORTHO05D005846 7.5e-29 131.0 144 43.8
CsaV3_3G009950 Cucumis sativus L. HOM05D000462 ORTHO05D005846 7.5e-29 131.0 130 48.5
Sed0009318 Sechium edule HOM05D000462 ORTHO05D005846 1.7e-28 129.8 127 50.4
Solyc01g081400.3 Solanum lycopersicum HOM05D000462 ORTHO05D005846 1.7e-28 129.8 125 50.4
Sopen01g032970 Solanum pennellii HOM05D000462 ORTHO05D005846 1.7e-28 129.8 125 50.4
PGR042G2077 Punica granatum HOM05D000462 ORTHO05D005846 2.2e-28 129.4 120 53.3
ClCG05G002510 Citrullus lanatus HOM05D000462 ORTHO05D005846 2.9e-28 129.0 140 49.3
Nitab4.5_0000792g0060 Nicotiana tabacum HOM05D000462 ORTHO05D005846 6.4e-28 127.9 126 47.6
Hma1.2p1_0353F.1_g133250 Hydrangea macrophylla HOM05D000462 ORTHO05D005846 1.4e-27 126.7 126 48.4
Sed0002685 Sechium edule HOM05D000462 ORTHO05D005846 3.2e-27 125.6 145 44.1
Sopen01g026530 Solanum pennellii HOM05D000462 ORTHO05D005846 9.2e-27 124.0 125 46.4
Nn3g19412 Nelumbo nucifera HOM05D000462 ORTHO05D005846 2.0e-26 122.9 141 42.6
Nn3g19417 Nelumbo nucifera HOM05D000462 ORTHO05D005846 2.0e-26 122.9 141 42.6
Peaxi162Scf00907g00226 Petunia axillaris HOM05D000462 ORTHO05D005846 2.0e-26 122.9 123 45.5
CAN.G206.135 Capsicum annuum HOM05D000462 ORTHO05D005846 2.7e-26 122.5 145 40.7
ClCG05G011530 Citrullus lanatus HOM05D000462 ORTHO05D005846 7.8e-26 120.9 127 45.7
Cc08_g05580 Coffea canephora HOM05D000462 ORTHO05D005846 5.0e-25 118.2 142 41.5
DCAR_029565 Daucus carota HOM05D000462 ORTHO05D005846 5.0e-25 118.2 137 43.8
TPR.G34026 Trifolium pratense HOM05D000462 ORTHO05D005846 5.0e-25 118.2 123 48.8
Aqoxy3G02219 Aquilegia oxysepala HOM05D000462 ORTHO05D005846 6.6e-25 117.9 133 44.4
Rhsim07G0047100 Rhododendron simsii HOM05D000462 ORTHO05D005846 6.6e-25 117.9 132 43.9
EL10Ac4g07923 Beta vulgaris HOM05D000462 ORTHO05D005846 8.6e-25 117.5 133 42.9
FAN14G3081 Fragaria x ananassa HOM05D000462 ORTHO05D005846 8.6e-25 117.5 101 57.4
Nn1g09754 Nelumbo nucifera HOM05D000462 ORTHO05D005846 8.6e-25 117.5 126 42.9
Hund26858 Selenicereus undatus HOM05D000462 ORTHO05D005846 8.6e-25 117.5 128 46.1
FvH4_7g07710 Fragaria vesca HOM05D000462 ORTHO05D005846 3.3e-24 115.5 129 49.6
Nitab4.5_0003123g0040 Nicotiana tabacum HOM05D000462 ORTHO05D011162 4.3e-24 115.2 128 43.8
arahy.Tifrunner.gnm1.ann1.L6NMZX Arachis hypogaea HOM05D000462 ORTHO05D005846 7.3e-24 114.4 138 42.0
AUR62031622 Chenopodium quinoa HOM05D000462 ORTHO05D005846 7.3e-24 114.4 130 43.1
Medtr4g083390 Medicago truncatula HOM05D000462 ORTHO05D005846 7.3e-24 114.4 140 41.4
MSTRG.17069 Avicennia marina HOM05D000462 ORTHO05D005846 9.5e-24 114.0 122 45.1
Lsat_1_v5_gn_5_59060 Lactuca sativa HOM05D000462 ORTHO05D005846 9.5e-24 114.0 132 42.4
arahy.Tifrunner.gnm1.ann1.AX2FME Arachis hypogaea HOM05D000462 ORTHO05D005846 2.8e-23 112.5 138 41.3
AUR62020515 Chenopodium quinoa HOM05D000462 ORTHO05D005846 2.8e-23 112.5 130 42.3
Solyc01g150140.1 Solanum lycopersicum HOM05D000462 ORTHO05D005846 3.6e-23 112.1 126 42.1
Phvul.002G100800 Phaseolus vulgaris HOM05D000462 ORTHO05D005846 6.2e-23 111.3 135 42.2
Migut.N01672 Erythranthe guttata HOM05D000462 ORTHO05D005846 8.0e-23 110.9 140 40.0
Oeu013594.1 Olea europaea HOM05D000462 ORTHO05D005846 1.1e-22 110.5 138 42.0
Sc02g0004850 Simmondsia chinensis HOM05D000462 ORTHO05D005846 1.1e-22 110.5 108 49.1
arahy.Tifrunner.gnm1.ann1.XCU387 Arachis hypogaea HOM05D000462 ORTHO05D005846 1.4e-22 110.2 128 42.2
Migut.N01674 Erythranthe guttata HOM05D000462 ORTHO05D005846 1.4e-22 110.2 141 41.8
HanXRQChr13g0411631 Helianthus annuus HOM05D000462 ORTHO05D005846 1.4e-22 110.2 129 42.6
arahy.Tifrunner.gnm1.ann1.ES60GW Arachis hypogaea HOM05D000462 ORTHO05D005846 3.1e-22 109.0 126 42.1
ECA236G1772 Erigeron canadensis HOM05D000462 ORTHO05D005846 3.1e-22 109.0 134 40.3
ECA240G2690 Erigeron canadensis HOM05D000462 ORTHO05D005846 4.0e-22 108.6 132 40.9
Lsat_1_v5_gn_7_33120 Lactuca sativa HOM05D000462 ORTHO05D005846 6.8e-22 107.8 117 44.4
Oeu039097.1 Olea europaea HOM05D000462 ORTHO05D005846 8.9e-22 107.5 144 41.0
Peaxi162Scf00245g00411 Petunia axillaris HOM05D000462 ORTHO05D005846 8.9e-22 107.5 134 41.8
arahy.Tifrunner.gnm1.ann1.62DZ2D Arachis hypogaea HOM05D000462 ORTHO05D005846 1.5e-21 106.7 120 45.0
Cc00_g12640 Coffea canephora HOM05D000462 ORTHO05D005846 1.5e-21 106.7 130 40.8
DCAR_029563 Daucus carota HOM05D000462 ORTHO05D005846 1.5e-21 106.7 128 41.4
DCAR_029566 Daucus carota HOM05D000462 ORTHO05D005846 2.0e-21 106.3 136 39.0
Cc08_g05560 Coffea canephora HOM05D000462 ORTHO05D005846 9.8e-21 104.0 121 43.0
Migut.N01673 Erythranthe guttata HOM05D000462 ORTHO05D005846 9.8e-21 104.0 140 40.7
Psat7g132920 Pisum sativum HOM05D000462 ORTHO05D005846 1.7e-20 103.2 120 45.0
Cc08_g05570 Coffea canephora HOM05D000462 ORTHO05D005846 4.9e-20 101.7 121 41.3
FAN10G1699 Fragaria x ananassa HOM05D000462 ORTHO05D005846 4.9e-20 101.7 79 60.8
VMungo0251G1006 Vigna mungo HOM05D000462 ORTHO05D005846 4.9e-20 101.7 131 40.5
Zm00001eb421100 Zea mays HOM05D000462 ORTHO05D005846 6.4e-20 101.3 124 38.7
Lalb_Chr09g0328911 Lupinus albus HOM05D000462 ORTHO05D005846 8.3e-20 100.9 133 39.8
PSO063G2746 Papaver somniferum HOM05D000462 ORTHO05D005846 8.3e-20 100.9 128 42.2
PSO017G2480 Papaver somniferum HOM05D000462 ORTHO05D005846 1.4e-19 100.1 128 39.1
vmacro13593 Vaccinium macrocarpon HOM05D000462 ORTHO05D005846 1.4e-19 100.1 132 40.9
Ciclev10033936m.g Citrus clementina HOM05D000462 ORTHO05D005846 3.2e-19 99.0 102 51.0
Aqoxy3G00515 Aquilegia oxysepala HOM05D000462 ORTHO05D005846 4.1e-19 98.6 130 38.5
PSO782G4146 Papaver somniferum HOM05D000462 ORTHO05D005846 4.1e-19 98.6 128 41.4
SalBow4G1864 Salvia bowleyana HOM05D000462 ORTHO05D005846 5.4e-19 98.2 125 40.8
SalBow4G3150 Salvia bowleyana HOM05D000462 ORTHO05D005846 5.4e-19 98.2 125 40.8
unitig_749.g14241 Utricularia gibba HOM05D000462 ORTHO05D005846 5.4e-19 98.2 108 41.7
Aqoxy2G03796 Aquilegia oxysepala HOM05D000462 ORTHO05D005846 9.2e-19 97.4 117 43.6
Aqoxy7G00268 Aquilegia oxysepala HOM05D000462 ORTHO05D005846 1.6e-18 96.7 124 37.1
PSO478G1321 Papaver somniferum HOM05D000462 ORTHO05D005846 3.5e-18 95.5 128 39.1
unitig_26.g8840 Utricularia gibba HOM05D000462 ORTHO05D005846 3.0e-17 92.4 108 38.9
HPP92_014959 Vanilla planifolia HOM05D000462 ORTHO05D005846 2.5e-16 89.4 123 36.6
Ca_18787_v3 Cicer arietinum L. HOM05D000462 ORTHO05D005846 4.3e-16 88.6 102 48.0
CANSAT78G2521 Cannabis sativa HOM05D000462 ORTHO05D005846 7.3e-16 87.8 136 37.5
SalBow4G0191 Salvia bowleyana HOM05D009568 ORTHO05D011026 7.3e-16 87.8 120 42.5
HanXRQChr01g0021801 Helianthus annuus HOM05D000462 ORTHO05D005846 1.2e-15 87.0 91 46.2
Os04g0386900 Oryza sativa ssp. japonica HOM05D000462 ORTHO05D005846 1.2e-15 87.0 127 35.4
AUR62020518 Chenopodium quinoa HOM05D000462 ORTHO05D005846 2.1e-15 86.3 130 38.5
Glyma.07G224100 Glycine max HOM05D000462 ORTHO05D005846 2.1e-15 86.3 76 50.0
Nitab4.5_0000050g0130 Nicotiana tabacum HOM05D000462 ORTHO05D005846 2.1e-15 86.3 126 37.3
unitig_750.g28427 Utricularia gibba HOM05D000462 ORTHO05D005846 2.1e-15 86.3 118 39.0
AUR62015684 Chenopodium quinoa HOM05D000462 ORTHO05D005846 6.2e-15 84.7 130 37.7
AUR62015689 Chenopodium quinoa HOM05D000462 ORTHO05D005846 6.2e-15 84.7 106 44.3
Os06g0112300 Oryza sativa ssp. japonica HOM05D000462 ORTHO05D005846 6.2e-15 84.7 124 37.1
Solyc07g017470.3 Solanum lycopersicum HOM05D000462 ORTHO05D005846 8.1e-15 84.3 92 45.7
SalBow4G0706 Salvia bowleyana HOM05D009568 ORTHO05D011026 1.4e-14 83.6 118 41.5
SGA_v2.0_scaffold98G29378 Striga asiatica HOM05D000462 ORTHO05D005846 1.8e-14 83.2 126 36.5
SalBow4G2124 Salvia bowleyana HOM05D000462 ORTHO05D005846 2.3e-14 82.8 114 41.2
AUR62031619 Chenopodium quinoa HOM05D000462 ORTHO05D005846 3.1e-14 82.4 88 50.0
CAN.G992.16 Capsicum annuum HOM05D000462 ORTHO05D005846 4.0e-14 82.0 81 51.9
SGA_v2.0_scaffold4G02224 Striga asiatica HOM05D000462 ORTHO05D005846 8.9e-14 80.9 107 39.3
SalBow4G2827 Salvia bowleyana HOM05D000462 ORTHO05D005846 1.2e-13 80.5 114 40.4
Cpa.g.sc73.65 Carica papaya HOM05D000462 ORTHO05D005846 2.0e-13 79.7 94 43.6
Nitab4.5_0006461g0020 Nicotiana tabacum HOM05D000462 ORTHO05D005846 4.4e-13 78.6 78 50.0
TPR.G34039 Trifolium pratense HOM05D000462 ORTHO05D005846 4.4e-13 78.6 88 39.8
AUR62031621 Chenopodium quinoa HOM05D000462 ORTHO05D005846 9.9e-13 77.4 103 40.8
CDE03G0429 Ceratophyllum demersum HOM05D000462 ORTHO05D005846 3.7e-12 75.5 102 37.3
Aqoxy5G02385 Aquilegia oxysepala HOM05D024176 ORTHO05D005846 4.9e-12 75.1 148 35.8
RcHm_v2.0_Chr1g0342381 Rosa chinensis HOM05D000462 ORTHO05D005846 9.5e-08 60.8 37 64.9
Peaxi162Scf00104g00047 Petunia axillaris HOM05D000462 ORTHO05D005846 1.6e-07 60.1 79 38.0
CANSAT01G0887 Cannabis sativa HOM05D000395 ORTHO05D000088 3.6e-07 58.9 113 31.9
AUR62003249 Chenopodium quinoa HOM05D000395 ORTHO05D000088 3.6e-07 58.9 122 29.5
Peaxi162Scf01016g00003 Petunia axillaris HOM05D000462 ORTHO05D005846 3.6e-07 58.9 100 33.0
Cpa.g.c42681 Carica papaya HOM05D000462 ORTHO05D005846 6.2e-07 58.2 63 44.4
Nitab4.5_0002937g0010 Nicotiana tabacum HOM05D010896 ORTHO05D011162 6.2e-07 58.2 99 35.4
Thecc.01G047200 Theobroma cacao HOM05D000395 ORTHO05D000088 8.1e-07 57.8 93 34.4
arahy.Tifrunner.gnm1.ann1.T57XL4 Arachis hypogaea HOM05D000395 ORTHO05D000088 1.8e-06 56.6 101 32.7
CANSAT01G1891 Cannabis sativa HOM05D000395 ORTHO05D000088 3.1e-06 55.8 107 33.6
SalBow6G3582 Salvia bowleyana HOM05D000462 ORTHO05D005846 3.1e-06 55.8 97 27.8
Solyc01g060370.2 Solanum lycopersicum HOM05D000462 ORTHO05D005846 3.1e-06 55.8 58 43.1
Aqoxy5G02746 Aquilegia oxysepala HOM05D024176 ORTHO05D005846 4.0e-06 55.5 106 35.8
Nitab4.5_0006031g0060 Nicotiana tabacum HOM05D010896 ORTHO05D011162 6.8e-06 54.7 87 34.5
PSO170G5993 Papaver somniferum HOM05D000823 ORTHO05D000088 6.8e-06 54.7 106 29.2


User provided reference genes

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