Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN14G2902 Fragaria x ananassa HOM05D005555 ORTHO05D006923 5.1e-230 800.8 435 100.0
FAN05G3309 Fragaria x ananassa HOM05D005555 ORTHO05D006923 1.3e-225 786.2 435 98.6
RcHm_v2.0_Chr2g0139231 Rosa chinensis HOM05D005555 ORTHO05D006923 1.5e-218 762.7 435 93.6
FAN02G4472 Fragaria x ananassa HOM05D005555 ORTHO05D006923 4.7e-207 724.5 435 88.7
Prupe.3G065100 Prunus persica HOM05D005555 ORTHO05D006923 8.0e-191 670.6 435 84.6
QL08p010014 Quercus lobata HOM05D005555 ORTHO05D006923 5.7e-189 664.5 434 78.6
MD17G1190200 Malus domestica HOM05D005555 ORTHO05D006923 1.3e-188 663.3 429 84.1
GSVIVG01037655001 Vitis vinifera HOM05D005555 ORTHO05D006923 2.8e-188 662.1 439 79.0
Gorai.009G438400 Gossypium raimondii HOM05D005555 ORTHO05D006923 3.7e-188 661.8 435 79.1
CANSAT11G1088 Cannabis sativa HOM05D005555 ORTHO05D006923 2.7e-186 655.6 431 81.4
TWI39G0347 Tripterygium wilfordii HOM05D005555 ORTHO05D006923 4.5e-186 654.8 437 78.9
CsaV3_7G021840 Cucumis sativus L. HOM05D005555 ORTHO05D006923 5.9e-186 654.4 432 78.9
Gohir.A04G016500 Gossypium hirsutum HOM05D005555 ORTHO05D006923 1.0e-185 653.7 435 81.1
Duzib268G1179 Durio zibethinus HOM05D005555 ORTHO05D006923 2.3e-185 652.5 435 78.2
Eucgr.F03470 Eucalyptus grandis HOM05D005555 ORTHO05D006923 1.1e-184 650.2 439 77.2
CSS0046165 Camellia sinensis var. sinensis HOM05D005555 ORTHO05D006923 1.5e-184 649.8 437 76.9
CiPaw.11G190000 Carya illinoinensis HOM05D005555 ORTHO05D006923 3.3e-184 648.7 431 80.7
Dinv22259 Davidia involucrata HOM05D005555 ORTHO05D006923 9.5e-184 647.1 437 77.6
Manes.15G071400 Manihot esculenta HOM05D005555 ORTHO05D006923 1.6e-183 646.4 433 82.7
Thecc.07G035900 Theobroma cacao HOM05D005555 ORTHO05D006923 4.7e-183 644.8 435 81.1
Actinidia35345 Actinidia chinensis HOM05D005555 ORTHO05D006923 1.4e-182 643.3 433 80.4
MSTRG.6923 Avicennia marina HOM05D005555 ORTHO05D006923 1.4e-182 643.3 425 79.1
Sed0005603 Sechium edule HOM05D005555 ORTHO05D006923 5.2e-182 641.3 426 77.0
CiPaw.12G130100 Carya illinoinensis HOM05D005555 ORTHO05D006923 1.5e-181 639.8 433 78.5
Gohir.D05G369700 Gossypium hirsutum HOM05D005555 ORTHO05D006923 2.0e-181 639.4 435 79.3
Cpa.g.sc12.303 Carica papaya HOM05D005555 ORTHO05D006923 4.4e-181 638.3 435 79.3
Lj6g0008930 Lotus japonicus HOM05D005555 ORTHO05D006923 2.9e-180 635.6 435 75.2
Ciclev10008353m.g Citrus clementina HOM05D005555 ORTHO05D006923 3.7e-180 635.2 435 79.1
TAR627G0887 Trochodendron aralioides HOM05D005555 ORTHO05D006923 1.9e-179 632.9 437 75.3
Migut.M01757 Erythranthe guttata HOM05D005555 ORTHO05D006923 1.2e-178 630.2 424 76.2
Gorai.009G438500 Gossypium raimondii HOM05D005555 ORTHO05D006923 3.0e-177 625.5 435 80.0
Lj8C169T24 Lonicera japonica HOM05D005555 ORTHO05D006923 5.0e-177 624.8 461 75.1
VMungo0540G1244 Vigna mungo HOM05D005555 ORTHO05D006923 5.0e-177 624.8 436 73.9
Lalb_Chr20g0113831 Lupinus albus HOM05D005555 ORTHO05D006923 8.6e-177 624.0 436 75.0
MD09G1208700 Malus domestica HOM05D005555 ORTHO05D006923 1.9e-176 622.9 412 82.8
Rhsim06G0217300 Rhododendron simsii HOM05D005555 ORTHO05D006923 2.5e-176 622.5 450 74.7
Nn1g07133 Nelumbo nucifera HOM05D005555 ORTHO05D006923 5.6e-176 621.3 437 73.5
arahy.Tifrunner.gnm1.ann1.UR7PB1 Arachis hypogaea HOM05D005555 ORTHO05D006923 3.6e-175 618.6 436 74.1
SGA_v2.0_scaffold172G39000 Striga asiatica HOM05D005555 ORTHO05D006923 2.3e-174 615.9 434 73.3
THA.LOC104817858 Tarenaya hassleriana HOM05D005555 ORTHO05D006923 8.9e-174 614.0 430 75.8
arahy.Tifrunner.gnm1.ann1.P3VUIG Arachis hypogaea HOM05D005555 ORTHO05D006923 4.4e-173 611.7 436 73.6
TPR.G33802 Trifolium pratense HOM05D005555 ORTHO05D006923 1.7e-172 609.8 445 72.1
Glyma.18G096300 Glycine max HOM05D005555 ORTHO05D006923 2.9e-172 609.0 436 71.8
arahy.Tifrunner.gnm1.ann1.QY89IE Arachis hypogaea HOM05D005555 ORTHO05D006923 3.7e-172 608.6 436 73.6
Potri.011G090800 Populus trichocarpa HOM05D005555 ORTHO05D006923 3.7e-172 608.6 438 79.2
Glyma.08G316800 Glycine max HOM05D005555 ORTHO05D006923 6.4e-172 607.8 431 72.6
Phvul.006G044000 Phaseolus vulgaris HOM05D005555 ORTHO05D006923 8.3e-172 607.4 436 72.5
A06p02920 Brassica napus HOM05D005555 ORTHO05D006923 1.1e-171 607.1 426 75.6
BraA06t23497Z Brassica rapa HOM05D005555 ORTHO05D006923 1.1e-171 607.1 426 75.6
Thhalv10011513m.g Eutrema salsugineum HOM05D005555 ORTHO05D006923 1.4e-171 606.7 426 78.9
CSS0038584 Camellia sinensis var. sinensis HOM05D005555 ORTHO05D006923 1.9e-171 606.3 440 73.9
Aa31LG10G3630 Aethionema arabicum HOM05D005555 ORTHO05D006923 2.4e-171 605.9 430 78.6
BcaC08g43248 Brassica carinata HOM05D005555 ORTHO05D006923 5.4e-171 604.7 426 75.1
C06p05960 Brassica napus HOM05D005555 ORTHO05D006923 5.4e-171 604.7 426 75.1
BolC6t35709H Brassica oleracea HOM05D005555 ORTHO05D006923 5.4e-171 604.7 426 75.1
Atru.chr2.3417 Acer truncatum HOM05D005555 ORTHO05D006923 7.0e-171 604.4 426 78.9
Aqoxy1G02148 Aquilegia oxysepala HOM05D005555 ORTHO05D006923 9.2e-171 604.0 422 73.9
Psat5g178680 Pisum sativum HOM05D005555 ORTHO05D006923 1.2e-170 603.6 431 72.6
PGR031G0129 Punica granatum HOM05D005555 ORTHO05D006923 1.2e-170 603.6 429 76.7
ClCG09G010820 Citrullus lanatus HOM05D005555 ORTHO05D006923 3.5e-170 602.1 479 69.1
MELO3C013162.2 Cucumis melo HOM05D005555 ORTHO05D006923 7.8e-170 600.9 444 72.7
ECA240G0357 Erigeron canadensis HOM05D005555 ORTHO05D006923 1.7e-169 599.7 420 72.9
Sp1g37550 Schrenkiella parvula HOM05D005555 ORTHO05D006923 3.9e-169 598.6 427 74.9
Ah.10g032310 Amaranthus hybridus HOM05D005555 ORTHO05D006923 5.1e-169 598.2 435 73.3
Carub.0001s3974 Capsella rubella HOM05D005555 ORTHO05D006923 5.1e-169 598.2 426 74.9
AL1G58400 Arabidopsis lyrata HOM05D005555 ORTHO05D006923 6.6e-169 597.8 426 75.1
Hund15555 Selenicereus undatus HOM05D005555 ORTHO05D006923 6.6e-169 597.8 425 72.5
BcaC08g43250 Brassica carinata HOM05D005555 ORTHO05D006923 1.5e-168 596.7 426 74.2
DCAR_016709 Daucus carota HOM05D005555 ORTHO05D006923 2.5e-168 595.9 433 77.1
AT1G50710 Arabidopsis thaliana HOM05D005555 ORTHO05D006923 9.5e-168 594.0 426 74.6
FvH4_6g31880 Fragaria vesca HOM05D005555 ORTHO05D006923 2.1e-167 592.8 324 100.0
Medtr3g052180 Medicago truncatula HOM05D005555 ORTHO05D006923 3.6e-167 592.0 429 71.1
Solyc12g005050.2 Solanum lycopersicum HOM05D005555 ORTHO05D006923 1.1e-166 590.5 427 71.9
PSO541G4760 Papaver somniferum HOM05D005555 ORTHO05D006923 8.9e-166 587.4 418 72.2
Nitab4.5_0008473g0010 Nicotiana tabacum HOM05D005555 ORTHO05D006923 1.2e-165 587.0 429 72.0
Sopen12g001050 Solanum pennellii HOM05D005555 ORTHO05D006923 1.5e-165 586.6 427 71.4
CARHR040810 Cardamine hirsuta HOM05D005555 ORTHO05D006923 7.5e-165 584.3 426 73.2
EL10Ac2g03146 Beta vulgaris HOM05D005555 ORTHO05D006923 1.3e-164 583.6 467 66.6
BcaB02g11175 Brassica carinata HOM05D005555 ORTHO05D006923 8.3e-164 580.9 426 73.5
MD03G1200100 Malus domestica HOM05D005555 ORTHO05D006923 2.4e-163 579.3 438 69.6
Medtr5g049170 Medicago truncatula HOM05D005555 ORTHO05D006923 2.4e-163 579.3 429 69.7
PSO675G4173 Papaver somniferum HOM05D005555 ORTHO05D006923 3.2e-163 578.9 418 73.2
PGSC0003DMG400027869 Solanum tuberosum HOM05D005555 ORTHO05D006923 4.1e-163 578.6 429 71.3
Sc03g0008570 Simmondsia chinensis HOM05D005555 ORTHO05D006923 9.2e-163 577.4 386 76.4
Nn1g03520 Nelumbo nucifera HOM05D005555 ORTHO05D006923 2.1e-162 576.2 433 68.1
arahy.Tifrunner.gnm1.ann1.GVQ212 Arachis hypogaea HOM05D005555 ORTHO05D006923 1.5e-160 570.1 471 67.5
DCAR_001508 Daucus carota HOM05D005555 ORTHO05D006923 2.5e-160 569.3 431 75.2
Cc05_g13620 Coffea canephora HOM05D005555 ORTHO05D006923 2.1e-159 566.2 421 69.4
Cc07_g19690 Coffea canephora HOM05D005555 ORTHO05D006923 2.1e-159 566.2 421 69.8
CAN.G542.3 Capsicum annuum HOM05D005555 ORTHO05D006923 6.2e-159 564.7 423 70.4
Lsat_1_v5_gn_2_47780 Lactuca sativa HOM05D005555 ORTHO05D006923 8.1e-159 564.3 429 70.6
BraA05t20906Z Brassica rapa HOM05D005555 ORTHO05D006923 2.4e-158 562.8 413 72.6
CDE04G3207 Ceratophyllum demersum HOM05D005555 ORTHO05D006923 4.0e-158 562.0 418 69.9
HanXRQChr03g0076481 Helianthus annuus HOM05D005555 ORTHO05D006923 2.0e-157 559.7 409 72.1
A05p19990 Brassica napus HOM05D005555 ORTHO05D006923 4.4e-157 558.5 413 72.6
ATR0752G192 Amborella trichopoda HOM05D005555 ORTHO05D006923 2.4e-155 552.7 436 69.7
CSS0007038 Camellia sinensis var. sinensis HOM05D005555 ORTHO05D006923 2.4e-155 552.7 451 67.0
unitig_744.g24404 Utricularia gibba HOM05D005555 ORTHO05D006923 2.4e-155 552.7 422 67.8
Ca_14731_v3 Cicer arietinum L. HOM05D005555 ORTHO05D006923 5.4e-155 551.6 517 59.4
Sabra11G0086200 Salix brachista HOM05D005555 ORTHO05D006923 2.1e-154 549.7 438 73.7
Cfa020338 Carpinus fangiana HOM05D005555 ORTHO05D006923 1.6e-151 540.0 386 79.0
BcaB07g33510 Brassica carinata HOM05D005555 ORTHO05D006923 2.1e-151 539.7 440 68.0
Nitab4.5_0000981g0050 Nicotiana tabacum HOM05D005555 ORTHO05D006923 2.4e-150 536.2 483 61.9
Haze_09680 Corylus avellana HOM05D005555 ORTHO05D006923 2.6e-149 532.7 490 66.1
vmacro11723 Vaccinium macrocarpon HOM05D005555 ORTHO05D006923 5.8e-149 531.6 522 61.5
MBI05_g12021_MAGBIO Magnolia biondii HOM05D005555 ORTHO05D006923 8.4e-148 527.7 418 67.7
RcHm_v2.0_Chr5g0039771 Rosa chinensis HOM05D005555 ORTHO05D006923 1.1e-147 527.3 431 65.2
Peaxi162Scf00660g00816 Petunia axillaris HOM05D005555 ORTHO05D006923 7.8e-146 521.2 392 69.9
Dinv40759 Davidia involucrata HOM05D005555 ORTHO05D006923 2.8e-143 512.7 383 75.2
AUR62018195 Chenopodium quinoa HOM05D005555 ORTHO05D006923 5.3e-142 508.4 439 64.5
FvH4_3g22760 Fragaria vesca HOM05D005555 ORTHO05D006923 9.9e-141 504.2 416 64.4
HanXRQChr05g0134351 Helianthus annuus HOM05D005555 ORTHO05D006923 1.4e-139 500.4 429 64.3
Prupe.4G214200 Prunus persica HOM05D005555 ORTHO05D006923 2.1e-138 496.5 370 71.1
Gohir.D05G369900 Gossypium hirsutum HOM05D005555 ORTHO05D006923 7.9e-138 494.6 435 64.6
Gohir.D05G370300 Gossypium hirsutum HOM05D005555 ORTHO05D006923 1.0e-137 494.2 383 73.9
HPP92_010410 Vanilla planifolia HOM05D005555 ORTHO05D006923 1.0e-137 494.2 440 63.2
SMO352G0045 Selaginella moellendorffii HOM05D005555 ORTHO05D006923 5.1e-129 465.3 416 59.1
Zm00001eb230170 Zea mays HOM05D005555 ORTHO05D006923 3.7e-127 459.1 420 63.3
Sed0020027 Sechium edule HOM05D005555 ORTHO05D006923 2.0e-125 453.4 397 64.5
FAN16G3656 Fragaria x ananassa HOM05D005555 ORTHO05D006923 7.6e-125 451.4 397 61.2
Mapoly0032s0110 Marchantia polymorpha HOM05D005555 ORTHO05D006923 7.6e-125 451.4 437 55.4
arahy.Tifrunner.gnm1.ann1.92YVPD Arachis hypogaea HOM05D005555 ORTHO05D006923 1.5e-117 427.2 430 55.1
Pp3c17_11280 Physcomitrium patens HOM05D005555 ORTHO05D006923 2.9e-116 422.9 413 55.0
TPR.G5778 Trifolium pratense HOM05D005555 ORTHO05D006923 6.5e-116 421.8 336 64.9
AUR62038682 Chenopodium quinoa HOM05D005555 ORTHO05D006923 5.7e-112 408.7 435 57.2
arahy.Tifrunner.gnm1.ann1.21WID0 Arachis hypogaea HOM05D005555 ORTHO05D006923 4.5e-109 399.1 437 51.5
FAN25G0297 Fragaria x ananassa HOM05D005555 ORTHO05D006923 1.9e-107 393.7 353 60.6
Medtr5g049150 Medicago truncatula HOM05D005555 ORTHO05D006923 1.1e-67 261.5 221 62.9
CBR_g19746 Chara braunii HOM05D005555 ORTHO05D006923 2.0e-64 250.8 383 38.9
CBR_g6714 Chara braunii HOM05D005555 ORTHO05D006923 5.2e-57 226.1 425 35.1
Os02g0119100 Oryza sativa ssp. japonica HOM05D005555 ORTHO05D006923 1.8e-41 174.5 204 59.3
TPR.G5733 Trifolium pratense HOM05D005555 ORTHO05D006923 6.4e-31 139.4 84 82.1
Hma1.2p1_0206F.1_g087650 Hydrangea macrophylla HOM05D005555 ORTHO05D006923 1.1e-17 95.5 46 95.7
Hma1.2p1_0545F.1_g176020 Hydrangea macrophylla HOM05D005555 ORTHO05D006923 1.1e-17 95.5 46 95.7
Lsat_1_v5_gn_9_94361 Lactuca sativa HOM05D005555 ORTHO05D006923 5.3e-17 93.2 55 80.0
Actinidia13832 Actinidia chinensis HOM05D005555 ORTHO05D006923 2.0e-08 64.7 50 62.0


User provided reference genes

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