Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN14G2805 Fragaria x ananassa HOM05D002612 ORTHO05D002859 3.6e-140 501.5 243 100.0
FAN14G3252 Fragaria x ananassa HOM05D002612 ORTHO05D002859 3.2e-96 355.5 249 77.1
FvH4_6g22210 Fragaria vesca HOM05D002612 ORTHO05D002859 1.0e-94 350.5 249 76.3
RcHm_v2.0_Chr3g0479541 Rosa chinensis HOM05D002612 ORTHO05D002859 6.2e-84 314.7 246 71.1
MD14G1056500 Malus domestica HOM05D002612 ORTHO05D002859 2.0e-66 256.5 245 60.0
CiPaw.10G026200 Carya illinoinensis HOM05D002612 ORTHO05D002859 4.1e-59 232.3 249 54.6
Prupe.7G077400 Prunus persica HOM05D002612 ORTHO05D002859 2.0e-58 229.9 246 56.9
TWI74G1029 Tripterygium wilfordii HOM05D002612 ORTHO05D002859 3.1e-51 206.1 246 48.8
TAR623G0372 Trochodendron aralioides HOM05D002612 ORTHO05D002859 1.3e-49 200.7 258 47.3
Hma1.2p1_0676F.1_g201950 Hydrangea macrophylla HOM05D002612 ORTHO05D002859 8.0e-47 191.4 253 47.0
Sed0006567 Sechium edule HOM05D002612 ORTHO05D002859 1.0e-46 191.0 251 47.0
Manes.09G035700 Manihot esculenta HOM05D002612 ORTHO05D002859 3.0e-46 189.5 249 47.4
Cfa020162 Carpinus fangiana HOM05D002612 ORTHO05D002859 5.2e-46 188.7 256 48.4
arahy.Tifrunner.gnm1.ann1.47DXFL Arachis hypogaea HOM05D002612 ORTHO05D002859 2.0e-45 186.8 236 48.3
arahy.Tifrunner.gnm1.ann1.J786L6 Arachis hypogaea HOM05D002612 ORTHO05D002859 2.0e-45 186.8 236 48.3
TPR.G32347 Trifolium pratense HOM05D002612 ORTHO05D002859 4.4e-45 185.7 252 47.6
Duzib106G0243 Durio zibethinus HOM05D002612 ORTHO05D002859 7.4e-45 184.9 247 44.9
GSVIVG01033493001 Vitis vinifera HOM05D002612 ORTHO05D002859 1.7e-44 183.7 250 47.6
Thecc.05G171700 Theobroma cacao HOM05D002612 ORTHO05D002859 1.4e-43 180.6 247 45.7
Ca_12071_v3 Cicer arietinum L. HOM05D002612 ORTHO05D002859 1.8e-43 180.3 252 47.2
QL07p023812 Quercus lobata HOM05D002612 ORTHO05D002859 1.6e-42 177.2 377 36.6
Sed0010869 Sechium edule HOM05D002612 ORTHO05D002859 7.7e-42 174.9 246 46.3
CsaV3_3G038780 Cucumis sativus L. HOM05D002612 ORTHO05D002859 1.1e-40 171.0 259 44.4
Gohir.A09G128100 Gossypium hirsutum HOM05D002612 ORTHO05D002859 1.1e-40 171.0 248 44.8
Eucgr.K01842 Eucalyptus grandis HOM05D002612 ORTHO05D002859 1.5e-40 170.6 246 43.1
Lalb_Chr18g0047881 Lupinus albus HOM05D002612 ORTHO05D002859 1.9e-40 170.2 255 44.3
Psat6g091240 Pisum sativum HOM05D002612 ORTHO05D002859 1.2e-39 167.5 252 44.8
Gorai.006G142900 Gossypium raimondii HOM05D002612 ORTHO05D002859 2.1e-39 166.8 248 43.5
COL.COLO4_33978 Corchorus olitorius HOM05D005723 ORTHO05D005968 4.7e-39 165.6 239 42.7
Gohir.D09G124100 Gossypium hirsutum HOM05D002612 ORTHO05D002859 6.1e-39 165.2 248 43.1
Aqoxy2G00058 Aquilegia oxysepala HOM05D002612 ORTHO05D002859 1.8e-38 163.7 262 42.7
Dinv24067 Davidia involucrata HOM05D002612 ORTHO05D002859 2.0e-37 160.2 247 43.3
VMungo1383G3725 Vigna mungo HOM05D002612 ORTHO05D002859 2.0e-37 160.2 247 43.3
Glyma.02G172700 Glycine max HOM05D002612 ORTHO05D002859 2.6e-37 159.8 236 44.1
THA.LOC104802604 Tarenaya hassleriana HOM05D002612 ORTHO05D002859 4.4e-37 159.1 256 43.0
Hund19204 Selenicereus undatus HOM05D002612 ORTHO05D002859 5.7e-37 158.7 249 43.4
Atru.chr8.1116 Acer truncatum HOM05D002612 ORTHO05D002859 7.5e-37 158.3 262 42.4
Nitab4.5_0002488g0060 Nicotiana tabacum HOM05D002612 ORTHO05D002859 7.5e-37 158.3 253 42.3
AL4G40440 Arabidopsis lyrata HOM05D002612 ORTHO05D002859 1.3e-36 157.5 260 42.7
Glyma.19G148000 Glycine max HOM05D002612 ORTHO05D002859 1.3e-36 157.5 246 44.3
Sopen03g016040 Solanum pennellii HOM05D002612 ORTHO05D002859 1.3e-36 157.5 247 40.9
Solyc03g063350.3 Solanum lycopersicum HOM05D002612 ORTHO05D002859 2.8e-36 156.4 247 40.9
EL10Ac3g06912 Beta vulgaris HOM05D002612 ORTHO05D002859 6.3e-36 155.2 253 41.5
Ciclev10012465m.g Citrus clementina HOM05D002612 ORTHO05D002859 8.3e-36 154.8 265 40.0
Sp4g24300 Schrenkiella parvula HOM05D002612 ORTHO05D002859 1.1e-35 154.5 258 42.2
Nitab4.5_0000324g0010 Nicotiana tabacum HOM05D002612 ORTHO05D002859 1.4e-35 154.1 253 42.3
Lj5g0018767 Lotus japonicus HOM05D002612 ORTHO05D002859 1.8e-35 153.7 250 44.8
PGR142G1191 Punica granatum HOM05D002612 ORTHO05D002859 4.1e-35 152.5 248 42.3
Carub.0004s2442 Capsella rubella HOM05D002612 ORTHO05D002859 5.3e-35 152.1 260 40.8
Duzib128G1439 Durio zibethinus HOM05D002612 ORTHO05D002859 7.0e-35 151.8 251 39.4
MD12G1056800 Malus domestica HOM05D002612 ORTHO05D002859 7.0e-35 151.8 127 65.4
Phvul.001G142600 Phaseolus vulgaris HOM05D002612 ORTHO05D002859 7.0e-35 151.8 247 42.9
MBI06_g15023_MAGBIO Magnolia biondii HOM05D002612 ORTHO05D002859 2.7e-34 149.8 262 42.0
Nn2g15693 Nelumbo nucifera HOM05D002612 ORTHO05D002859 1.0e-33 147.9 235 42.1
CANSAT64G1369 Cannabis sativa HOM05D002612 ORTHO05D002859 2.2e-33 146.7 252 42.1
AT2G42080 Arabidopsis thaliana HOM05D002612 ORTHO05D002859 2.9e-33 146.4 262 40.1
Sabra16G0049300 Salix brachista HOM05D002612 ORTHO05D002859 5.0e-33 145.6 219 42.0
CAN.G570.9 Capsicum annuum HOM05D002612 ORTHO05D002859 8.5e-33 144.8 247 39.7
ClCG10G017560 Citrullus lanatus HOM05D002612 ORTHO05D002859 8.5e-33 144.8 259 39.4
AUR62015364 Chenopodium quinoa HOM05D002612 ORTHO05D002859 2.5e-32 143.3 261 41.0
AUR62012027 Chenopodium quinoa HOM05D002612 ORTHO05D002859 7.2e-32 141.7 259 40.9
BcaB06g29225 Brassica carinata HOM05D002612 ORTHO05D002859 8.0e-31 138.3 266 40.6
MSTRG.19906 Avicennia marina HOM05D002612 ORTHO05D002859 2.3e-30 136.7 255 39.2
C04p03250 Brassica napus HOM05D002612 ORTHO05D002859 3.0e-30 136.3 272 39.3
BolC4t21963H Brassica oleracea HOM05D002612 ORTHO05D002859 3.0e-30 136.3 272 39.3
Peaxi162Scf00258g00631 Petunia axillaris HOM05D002612 ORTHO05D002859 5.2e-30 135.6 277 36.5
FAN09G3207 Fragaria x ananassa HOM05D002612 ORTHO05D002859 8.8e-30 134.8 119 63.9
A05p02720 Brassica napus HOM05D002612 ORTHO05D002859 1.2e-29 134.4 257 40.1
Medtr0015s0110 Medicago truncatula HOM05D002612 ORTHO05D002859 2.0e-29 133.7 250 38.4
Cc06_g15900 Coffea canephora HOM05D002612 ORTHO05D002859 3.4e-29 132.9 268 37.3
BcaNung04409 Brassica carinata HOM05D002612 ORTHO05D002859 4.4e-29 132.5 261 38.7
BraA05t19264Z Brassica rapa HOM05D002612 ORTHO05D002859 5.7e-29 132.1 257 39.3
CARHR137160 Cardamine hirsuta HOM05D002612 ORTHO05D002859 1.7e-28 130.6 261 37.9
Phvul.007G260100 Phaseolus vulgaris HOM05D002612 ORTHO05D002859 2.2e-28 130.2 232 42.7
BcaC02g07265 Brassica carinata HOM05D002612 ORTHO05D002859 2.8e-28 129.8 262 40.1
Oeu033736.1 Olea europaea HOM05D002612 ORTHO05D002859 2.8e-28 129.8 207 43.0
SGA_v2.0_scaffold105G30491 Striga asiatica HOM05D002612 ORTHO05D002859 2.4e-27 126.7 227 39.2
C04p69490 Brassica napus HOM05D002612 ORTHO05D002859 5.4e-27 125.6 262 39.3
BolC4t28448H Brassica oleracea HOM05D002612 ORTHO05D002859 5.4e-27 125.6 262 39.3
BraA04t18656Z Brassica rapa HOM05D002612 ORTHO05D002859 5.4e-27 125.6 254 39.0
A04p31980 Brassica napus HOM05D002612 ORTHO05D002859 1.2e-26 124.4 262 39.3
HanXRQChr01g0009751 Helianthus annuus HOM05D002612 ORTHO05D002859 2.0e-26 123.6 267 39.3
PGSC0003DMG400019954 Solanum tuberosum HOM05D002612 ORTHO05D002859 2.0e-26 123.6 172 45.3
Rhsim03G0005800 Rhododendron simsii HOM05D002612 ORTHO05D002859 2.7e-26 123.2 300 37.7
CSS0019314 Camellia sinensis var. sinensis HOM05D002612 ORTHO05D002859 2.5e-24 116.7 118 56.8
Lsat_1_v5_gn_5_163560 Lactuca sativa HOM05D002612 ORTHO05D002859 2.5e-24 116.7 181 43.1
ATR0807G015 Amborella trichopoda HOM05D002612 ORTHO05D002859 4.2e-24 115.9 269 35.3
Migut.J01834 Erythranthe guttata HOM05D002612 ORTHO05D002859 7.2e-24 115.2 264 37.5
BcaC02g12457 Brassica carinata HOM05D002612 ORTHO05D002859 2.8e-23 113.2 225 39.1
Sc13g0002290 Simmondsia chinensis HOM05D002612 ORTHO05D002859 3.6e-23 112.8 183 38.8
PSO675G2711 Papaver somniferum HOM05D002612 ORTHO05D002859 4.0e-22 109.4 244 38.1
ECA248G2814 Erigeron canadensis HOM05D000267 ORTHO05D000298 1.5e-21 107.5 226 36.7
Actinidia22037 Actinidia chinensis HOM05D002612 ORTHO05D002859 1.3e-20 104.4 174 41.4
Os07g0470800 Oryza sativa ssp. japonica HOM05D002612 ORTHO05D002859 1.7e-20 104.0 196 37.8
SalBow6G1620 Salvia bowleyana HOM05D002612 ORTHO05D002859 1.7e-20 104.0 253 36.4
SalBow6G0399 Salvia bowleyana HOM05D002612 ORTHO05D002859 2.2e-20 103.6 253 36.4
Cpa.g.sc85.63 Carica papaya HOM05D002612 ORTHO05D002859 4.9e-20 102.4 190 40.0
Aa31LG1G24120 Aethionema arabicum HOM05D002612 ORTHO05D002859 6.3e-20 102.1 296 32.8
SGA_v2.0_scaffold37G14819 Striga asiatica HOM05D002612 ORTHO05D002859 1.4e-19 100.9 274 34.3
AL5G39680 Arabidopsis lyrata HOM05D002612 ORTHO05D002859 9.2e-19 98.2 248 33.5
unitig_699.g19445 Utricularia gibba HOM05D002612 ORTHO05D002859 2.7e-18 96.7 234 34.6
AT3G58020 Arabidopsis thaliana HOM05D002612 ORTHO05D002859 3.5e-18 96.3 261 33.7
Thhalv10017091m.g Eutrema salsugineum HOM05D002612 ORTHO05D002859 4.5e-18 95.9 143 39.9
VMungo0720G2417 Vigna mungo HOM05D005723 ORTHO05D005968 1.0e-17 94.7 184 38.0
HPP92_022664 Vanilla planifolia HOM05D002612 ORTHO05D002859 1.3e-17 94.4 212 34.4
MELO3C009622.2 Cucumis melo HOM05D002612 ORTHO05D002859 1.7e-17 94.0 136 41.2
BcaC07g40175 Brassica carinata HOM05D002612 ORTHO05D002859 1.1e-16 91.3 246 33.7
Thhalv10006160m.g Eutrema salsugineum HOM05D002612 ORTHO05D002859 4.3e-16 89.4 269 32.0
Sabra06G0147900 Salix brachista HOM05D002612 ORTHO05D002859 1.6e-15 87.4 132 40.9
DCAR_013544 Daucus carota HOM05D002612 ORTHO05D002859 2.8e-15 86.7 163 39.3
Haze_19994 Corylus avellana HOM05D002612 ORTHO05D002859 1.7e-12 77.4 76 61.8
Carub.0005s2487 Capsella rubella HOM05D002612 ORTHO05D002859 2.2e-12 77.0 238 33.6
Sp5g04700 Schrenkiella parvula HOM05D002612 ORTHO05D002859 2.9e-12 76.6 258 30.2
Ah.04g152500 Amaranthus hybridus HOM05D005723 ORTHO05D005968 4.9e-12 75.9 182 34.6
BolC8t50953H Brassica oleracea HOM05D002612 ORTHO05D002859 4.9e-12 75.9 281 29.2
CARHR168340 Cardamine hirsuta HOM05D002612 ORTHO05D002859 6.4e-12 75.5 256 31.2
C08p33580 Brassica napus HOM05D002612 ORTHO05D002859 1.4e-11 74.3 281 29.2
Potri.016G045401 Populus trichocarpa HOM05D002612 ORTHO05D002859 4.1e-11 72.8 156 34.0
Zm00001eb320120 Zea mays HOM05D002612 ORTHO05D002859 7.0e-11 72.0 197 32.5
BraA09t40530Z Brassica rapa HOM05D002612 ORTHO05D002859 2.3e-09 67.0 271 26.9
Cc06_g15910 Coffea canephora HOM05D002612 ORTHO05D002859 6.6e-09 65.5 240 30.0
TAR381G1391 Trochodendron aralioides HOM05D002612 ORTHO05D002859 1.5e-08 64.3 267 28.5
Sabra06G0147800 Salix brachista HOM05D002612 ORTHO05D002859 1.9e-08 63.9 89 42.7
arahy.Tifrunner.gnm1.ann1.DV27UL Arachis hypogaea HOM05D000512 ORTHO05D002146 9.5e-08 61.6 68 47.1
Carub.0004s2441 Capsella rubella HOM05D002612 ORTHO05D002859 9.5e-08 61.6 258 27.9
A09p50840 Brassica napus HOM05D002612 ORTHO05D002859 1.2e-07 61.2 269 26.8
Glyma.09G116800 Glycine max HOM05D002612 ORTHO05D002859 1.6e-07 60.8 119 36.1
CAN.G249.15 Capsicum annuum HOM05D002612 ORTHO05D002859 2.8e-07 60.1 233 26.6
Glyma.09G116600 Glycine max HOM05D002612 ORTHO05D002859 6.2e-07 58.9 247 28.3
Nitab4.5_0011433g0030 Nicotiana tabacum HOM05D002612 ORTHO05D002859 8.0e-07 58.5 267 28.1
vmacro07906 Vaccinium macrocarpon HOM05D002612 ORTHO05D002859 1.1e-06 58.2 26 92.3
Ciclev10026217m.g Citrus clementina HOM05D002612 ORTHO05D002859 1.4e-06 57.8 211 30.3
Prupe.6G131200 Prunus persica HOM05D002612 ORTHO05D002859 1.4e-06 57.8 232 30.6
MD01G1016700 Malus domestica HOM05D002612 ORTHO05D002859 1.8e-06 57.4 252 29.4
Phvul.009G147300 Phaseolus vulgaris HOM05D002612 ORTHO05D002859 1.8e-06 57.4 251 27.1
TWI79G0923 Tripterygium wilfordii HOM05D002612 ORTHO05D002859 1.8e-06 57.4 164 34.1
Prupe.6G162400 Prunus persica HOM05D002612 ORTHO05D002859 2.3e-06 57.0 255 29.4
QL06p051793 Quercus lobata HOM05D002612 ORTHO05D002859 3.1e-06 56.6 220 29.1
CDE06G1146 Ceratophyllum demersum HOM05D002612 ORTHO05D002859 4.0e-06 56.2 166 30.7
HanXRQChr09g0259761 Helianthus annuus HOM05D002612 ORTHO05D002859 4.0e-06 56.2 120 35.8
Lj1g0016833 Lotus japonicus HOM05D002612 ORTHO05D002859 4.0e-06 56.2 118 33.9
PGSC0003DMG400003989 Solanum tuberosum HOM05D002612 ORTHO05D002859 4.0e-06 56.2 254 26.4
Glyma.09G111101 Glycine max HOM05D002612 ORTHO05D002859 5.2e-06 55.8 72 44.4
Sopen11g001410 Solanum pennellii HOM05D002612 ORTHO05D002859 5.2e-06 55.8 253 26.1
CsaV3_2G018060 Cucumis sativus L. HOM05D002612 ORTHO05D002859 6.8e-06 55.5 145 33.1
Gohir.A12G079800 Gossypium hirsutum HOM05D002612 ORTHO05D002859 6.8e-06 55.5 120 31.7
Solyc11g005400.2 Solanum lycopersicum HOM05D002612 ORTHO05D002859 6.8e-06 55.5 253 26.1
Actinidia32395 Actinidia chinensis HOM05D002612 ORTHO05D002859 8.9e-06 55.1 26 88.5
Dinv09944 Davidia involucrata HOM05D002612 ORTHO05D002859 8.9e-06 55.1 120 32.5
Glyma.03G144900 Glycine max HOM05D002612 ORTHO05D002859 8.9e-06 55.1 26 88.5


User provided reference genes

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