Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN14G2800 Fragaria x ananassa HOM05D004499 ORTHO05D004928 2.2e-167 592.4 341 100.0
FvH4_6g15510 Fragaria vesca HOM05D004499 ORTHO05D004928 1.1e-166 590.1 341 99.7
FAN09G3365 Fragaria x ananassa HOM05D004499 ORTHO05D004928 1.8e-166 589.3 341 99.4
FAN02G0924 Fragaria x ananassa HOM05D004499 ORTHO05D004928 4.5e-157 558.1 341 94.7
FAN05G3415 Fragaria x ananassa HOM05D004499 ORTHO05D004928 5.0e-156 554.7 341 89.1
RcHm_v2.0_Chr3g0469011 Rosa chinensis HOM05D004499 ORTHO05D004928 3.1e-129 465.7 341 75.1
Prupe.6G240400 Prunus persica HOM05D004499 ORTHO05D004928 4.5e-96 355.5 328 70.4
MD04G1102600 Malus domestica HOM05D004499 ORTHO05D004928 2.1e-90 336.7 334 59.6
CiPaw.09G179000 Carya illinoinensis HOM05D004499 ORTHO05D004928 2.6e-80 303.1 327 59.3
Haze_20629 Corylus avellana HOM05D004499 ORTHO05D004928 1.8e-73 280.4 352 53.1
TAR623G0879 Trochodendron aralioides HOM05D004499 ORTHO05D004928 1.2e-69 267.7 332 51.2
QL07p045089 Quercus lobata HOM05D004499 ORTHO05D004928 1.6e-69 267.3 333 53.8
Thecc.05G055800 Theobroma cacao HOM05D004499 ORTHO05D004928 3.9e-68 262.7 333 58.6
Cfa017521 Carpinus fangiana HOM05D004499 ORTHO05D004928 2.0e-67 260.4 350 52.3
Sed0022446 Sechium edule HOM05D004499 ORTHO05D004928 1.7e-66 257.3 331 54.4
CiPaw.10G136800 Carya illinoinensis HOM05D004499 ORTHO05D004928 7.0e-65 251.9 328 49.4
ClCG10G020450 Citrullus lanatus HOM05D004499 ORTHO05D004928 1.6e-64 250.8 340 50.6
Manes.09G078863 Manihot esculenta HOM05D004499 ORTHO05D004928 8.5e-63 245.0 339 49.3
Atru.chr8.1895 Acer truncatum HOM05D004499 ORTHO05D004928 2.5e-62 243.4 354 51.7
Gorai.009G419500 Gossypium raimondii HOM05D004499 ORTHO05D004928 4.2e-62 242.7 330 52.1
Duzib093G0117 Durio zibethinus HOM05D004499 ORTHO05D004928 1.8e-60 237.3 332 48.5
TWI53G1356 Tripterygium wilfordii HOM05D004499 ORTHO05D004928 4.0e-60 236.1 339 49.9
Lalb_Chr25g0289231 Lupinus albus HOM05D004499 ORTHO05D004928 5.2e-60 235.7 346 48.3
Gohir.A04G075800 Gossypium hirsutum HOM05D004499 ORTHO05D004928 6.7e-60 235.3 333 52.3
Potri.006G130500 Populus trichocarpa HOM05D004499 ORTHO05D004928 1.2e-59 234.6 339 49.9
Sabra06G0102500 Salix brachista HOM05D004499 ORTHO05D004928 1.2e-59 234.6 334 48.5
Sed0006356 Sechium edule HOM05D004499 ORTHO05D004928 2.2e-58 230.3 337 48.7
MD12G1122400 Malus domestica HOM05D004499 ORTHO05D004928 2.8e-58 229.9 332 51.8
MELO3C009326.2 Cucumis melo HOM05D004499 ORTHO05D004928 8.2e-58 228.4 341 53.4
CANSAT80G2505 Cannabis sativa HOM05D004499 ORTHO05D004928 1.1e-57 228.0 341 51.6
Nn2g10698 Nelumbo nucifera HOM05D004499 ORTHO05D004928 1.8e-57 227.3 332 49.4
CsaV3_3G035670 Cucumis sativus L. HOM05D004499 ORTHO05D004928 2.4e-57 226.9 343 54.5
Dinv37265 Davidia involucrata HOM05D004499 ORTHO05D004928 2.7e-56 223.4 333 46.2
Gorai.006G168200 Gossypium raimondii HOM05D004499 ORTHO05D004928 4.5e-56 222.6 330 45.8
Hma1.2p1_0350F.1_g132810 Hydrangea macrophylla HOM05D004499 ORTHO05D004928 1.7e-55 220.7 325 45.5
Gohir.A09G151400 Gossypium hirsutum HOM05D004499 ORTHO05D004928 2.9e-55 219.9 330 45.5
Hma1.2p1_0111F.1_g054000 Hydrangea macrophylla HOM05D004499 ORTHO05D004928 1.5e-54 217.6 341 43.4
Gohir.D09G147000 Gossypium hirsutum HOM05D004499 ORTHO05D004928 5.5e-54 215.7 330 45.2
Sabra16G0093100 Salix brachista HOM05D004499 ORTHO05D004928 1.0e-52 211.5 338 45.3
Lj5g0026303 Lotus japonicus HOM05D004499 ORTHO05D004928 5.2e-52 209.1 338 43.5
Potri.016G086900 Populus trichocarpa HOM05D004499 ORTHO05D004928 1.5e-51 207.6 339 46.9
CSS0015121 Camellia sinensis var. sinensis HOM05D004499 ORTHO05D004928 2.0e-51 207.2 356 45.5
Cpa.g.sc174.12 Carica papaya HOM05D004499 ORTHO05D004928 3.4e-51 206.5 328 44.8
TWI77G0862 Tripterygium wilfordii HOM05D004499 ORTHO05D004928 6.3e-50 202.2 324 45.7
Nn2g13028 Nelumbo nucifera HOM05D004499 ORTHO05D004928 1.4e-49 201.1 339 47.8
Lalb_Chr01g0018981 Lupinus albus HOM05D004499 ORTHO05D004928 5.4e-49 199.1 339 44.8
Rhsim04G0149000 Rhododendron simsii HOM05D004499 ORTHO05D004928 1.5e-46 191.0 345 46.1
CSS0037383 Camellia sinensis var. sinensis HOM05D004499 ORTHO05D004928 1.4e-44 184.5 337 40.7
Lj1g0000961 Lotus japonicus HOM05D004499 ORTHO05D004928 3.0e-44 183.3 337 42.4
CSS0026303 Camellia sinensis var. sinensis HOM05D004499 ORTHO05D004928 4.0e-44 183.0 337 40.4
GSVIVG01025644001 Vitis vinifera HOM05D004499 ORTHO05D004928 1.2e-43 181.4 331 41.7
Aqoxy4G03228 Aquilegia oxysepala HOM05D004499 ORTHO05D004928 1.5e-43 181.0 338 42.3
Glyma.03G178700 Glycine max HOM05D004499 ORTHO05D004928 1.5e-43 181.0 332 41.6
THA.LOC104806496 Tarenaya hassleriana HOM05D004499 ORTHO05D004928 1.5e-43 181.0 326 45.1
Medtr1g066750 Medicago truncatula HOM05D004499 ORTHO05D004928 2.6e-43 180.3 331 40.5
Medtr7g100830 Medicago truncatula HOM05D004499 ORTHO05D004928 5.7e-43 179.1 329 41.3
Manes.08G004127 Manihot esculenta HOM05D004499 ORTHO05D004928 7.5e-43 178.7 219 48.4
Manes.08G004131 Manihot esculenta HOM05D004499 ORTHO05D004928 7.5e-43 178.7 219 48.4
Manes.08G004114 Manihot esculenta HOM05D004499 ORTHO05D004928 4.9e-42 176.0 219 47.9
Manes.08G004120 Manihot esculenta HOM05D004499 ORTHO05D004928 4.9e-42 176.0 219 47.9
Manes.08G004126 Manihot esculenta HOM05D004499 ORTHO05D004928 1.1e-41 174.9 219 47.5
Duzib106G0876 Durio zibethinus HOM05D004499 ORTHO05D004928 1.8e-41 174.1 335 41.5
Glyma.19G179400 Glycine max HOM05D004499 ORTHO05D004928 1.8e-41 174.1 329 41.3
Manes.08G004109 Manihot esculenta HOM05D004499 ORTHO05D004928 3.1e-41 173.3 219 47.9
Manes.08G004117 Manihot esculenta HOM05D004499 ORTHO05D004928 3.1e-41 173.3 219 47.9
Ca_08832_v3 Cicer arietinum L. HOM05D004499 ORTHO05D004928 1.2e-40 171.4 322 46.6
PGR004G1454 Punica granatum HOM05D004499 ORTHO05D004928 1.6e-40 171.0 380 39.5
DCAR_014968 Daucus carota HOM05D004499 ORTHO05D004928 1.7e-39 167.5 334 40.4
Glyma.10G050500 Glycine max HOM05D004499 ORTHO05D004928 1.7e-39 167.5 334 40.7
Phvul.007G164800 Phaseolus vulgaris HOM05D004499 ORTHO05D004928 6.6e-39 165.6 336 39.6
VMungo1383G2757 Vigna mungo HOM05D004499 ORTHO05D004928 1.5e-38 164.5 335 40.3
Lsat_1_v5_gn_6_30120 Lactuca sativa HOM05D004499 ORTHO05D004928 1.9e-38 164.1 327 40.4
Gohir.D04G114901 Gossypium hirsutum HOM05D004499 ORTHO05D004928 9.5e-38 161.8 164 55.5
Psat3g044200 Pisum sativum HOM05D004499 ORTHO05D004928 9.5e-38 161.8 332 41.0
Sc20g0005110 Simmondsia chinensis HOM05D004499 ORTHO05D004928 2.8e-37 160.2 342 37.7
Glyma.13G138000 Glycine max HOM05D004499 ORTHO05D004928 3.6e-37 159.8 334 40.7
Phvul.001G175400 Phaseolus vulgaris HOM05D004499 ORTHO05D004928 1.0e-36 158.3 335 39.7
Oeu029418.1 Olea europaea HOM05D004499 ORTHO05D004928 4.0e-36 156.4 332 38.9
PGSC0003DMG400001742 Solanum tuberosum HOM05D004499 ORTHO05D004928 5.2e-36 156.0 331 39.6
Lalb_Chr20g0112851 Lupinus albus HOM05D004499 ORTHO05D004928 6.8e-36 155.6 330 37.6
SalBow3G3210 Salvia bowleyana HOM05D004499 ORTHO05D004928 8.9e-36 155.2 344 36.6
MSTRG.19143 Avicennia marina HOM05D004499 ORTHO05D004928 1.2e-35 154.8 346 38.4
Psat6g070200 Pisum sativum HOM05D004499 ORTHO05D004928 1.5e-35 154.5 329 41.3
Cc06_g03680 Coffea canephora HOM05D004499 ORTHO05D004928 5.7e-35 152.5 367 39.2
Dinv35728 Davidia involucrata HOM05D004499 ORTHO05D004928 7.5e-35 152.1 194 52.1
Sp4g19420 Schrenkiella parvula HOM05D004499 ORTHO05D004928 7.5e-35 152.1 342 39.2
CARHR131610 Cardamine hirsuta HOM05D004499 ORTHO05D004928 4.9e-34 149.4 338 36.1
Thhalv10016942m.g Eutrema salsugineum HOM05D004499 ORTHO05D004928 6.4e-34 149.1 338 40.8
Solyc09g007470.2 Solanum lycopersicum HOM05D004499 ORTHO05D004928 6.4e-34 149.1 327 41.0
Sopen00g013370 Solanum pennellii HOM05D004499 ORTHO05D004928 7.0e-33 145.6 327 40.4
Thhalv10014228m.g Eutrema salsugineum HOM05D004499 ORTHO05D004928 2.7e-32 143.7 335 37.6
ClCG04G008860 Citrullus lanatus HOM05D004499 ORTHO05D004928 6.6e-31 139.0 326 38.0
Manes.08G004906 Manihot esculenta HOM05D004499 ORTHO05D004928 8.6e-31 138.7 199 45.2
C04p10830 Brassica napus HOM05D004499 ORTHO05D004928 1.5e-30 137.9 338 36.7
BcaC02g11837 Brassica carinata HOM05D004499 ORTHO05D004928 1.9e-30 137.5 338 36.7
BolC4t22678H Brassica oleracea HOM05D004499 ORTHO05D004928 2.5e-30 137.1 337 37.1
Manes.12G048251 Manihot esculenta HOM05D004499 ORTHO05D004928 3.3e-30 136.7 199 44.7
CARHR210240 Cardamine hirsuta HOM05D004499 ORTHO05D004928 7.3e-30 135.6 278 39.2
A05p08740 Brassica napus HOM05D004499 ORTHO05D004928 9.5e-30 135.2 340 37.1
BraA05t19842Z Brassica rapa HOM05D004499 ORTHO05D004928 1.2e-29 134.8 340 37.1
Sp6g39600 Schrenkiella parvula HOM05D004499 ORTHO05D004928 1.6e-29 134.4 267 38.2
Manes.05G197001 Manihot esculenta HOM05D004499 ORTHO05D004928 2.1e-29 134.0 199 44.2
Manes.05G197300 Manihot esculenta HOM05D004499 ORTHO05D004928 3.6e-29 133.3 197 44.2
MELO3C014257.2 Cucumis melo HOM05D004499 ORTHO05D004928 4.7e-29 132.9 341 35.5
Migut.J00423 Erythranthe guttata HOM05D004499 ORTHO05D004928 4.7e-29 132.9 366 35.0
AUR62042302 Chenopodium quinoa HOM05D004499 ORTHO05D004928 6.2e-29 132.5 338 35.8
BcaB02g09303 Brassica carinata HOM05D004499 ORTHO05D004928 1.8e-28 131.0 341 37.0
unitig_26.g9218 Utricularia gibba HOM05D004499 ORTHO05D004928 2.3e-28 130.6 338 34.6
AL4G33450 Arabidopsis lyrata HOM05D004499 ORTHO05D004928 4.0e-28 129.8 336 40.5
AT2G37100 Arabidopsis thaliana HOM05D004499 ORTHO05D004928 1.2e-27 128.3 326 37.4
MSTRG.26719 Avicennia marina HOM05D004499 ORTHO05D004928 2.6e-27 127.1 328 36.6
AL6G12390 Arabidopsis lyrata HOM05D004499 ORTHO05D004928 3.4e-27 126.7 281 37.4
AT5G03110 Arabidopsis thaliana HOM05D004499 ORTHO05D004928 4.4e-27 126.3 236 38.1
Oeu038974.1 Olea europaea HOM05D004499 ORTHO05D004928 9.8e-27 125.2 381 35.2
THA.LOC104826978 Tarenaya hassleriana HOM05D004499 ORTHO05D004928 1.3e-26 124.8 338 37.3
ECA233G0353 Erigeron canadensis HOM05D004499 ORTHO05D004928 2.2e-26 124.0 314 35.7
BcaC03g13031 Brassica carinata HOM05D004499 ORTHO05D004928 2.4e-25 120.6 241 38.6
Lsat_1_v5_gn_1_54160 Lactuca sativa HOM05D004499 ORTHO05D004928 2.4e-25 120.6 326 35.0
C02p00790 Brassica napus HOM05D004499 ORTHO05D004928 3.2e-25 120.2 243 39.1
BolC2t06077H Brassica oleracea HOM05D004499 ORTHO05D004928 3.2e-25 120.2 243 39.1
BcaB05g21851 Brassica carinata HOM05D004499 ORTHO05D004928 1.2e-24 118.2 290 36.9
COL.COLO4_27061 Corchorus olitorius HOM05D004499 ORTHO05D004928 1.2e-24 118.2 82 74.4
THA.LOC104816329 Tarenaya hassleriana HOM05D004499 ORTHO05D004928 1.6e-24 117.9 333 37.8
Carub.0006s0191 Capsella rubella HOM05D004499 ORTHO05D004928 6.0e-24 115.9 332 35.8
SGA_v2.0_scaffold126G33909 Striga asiatica HOM05D004499 ORTHO05D004928 6.0e-24 115.9 323 35.9
DCAR_009280 Daucus carota HOM05D004499 ORTHO05D004928 6.6e-23 112.5 328 34.1
HanXRQChr02g0051991 Helianthus annuus HOM05D004499 ORTHO05D004928 8.6e-23 112.1 143 49.7
Oeu060092.2 Olea europaea HOM05D000784 ORTHO05D004928 8.6e-23 112.1 320 33.1
MSTRG.10304 Avicennia marina HOM05D004499 ORTHO05D004928 1.5e-22 111.3 322 31.1
BraA02t04744Z Brassica rapa HOM05D004499 ORTHO05D004928 1.9e-22 110.9 247 37.2
Carub.0004s1899 Capsella rubella HOM05D004499 ORTHO05D004928 2.5e-22 110.5 331 36.3
CsaV3_6G039360 Cucumis sativus L. HOM05D004499 ORTHO05D004928 2.5e-22 110.5 327 35.8
Aa31LG5G22320 Aethionema arabicum HOM05D004499 ORTHO05D004928 4.3e-22 109.8 331 31.7
PSO339G1230 Papaver somniferum HOM05D004499 ORTHO05D004928 3.6e-21 106.7 333 33.6
Sed0011318 Sechium edule HOM05D004499 ORTHO05D004928 1.1e-20 105.1 220 37.7
RhsimUnG0115800 Rhododendron simsii HOM05D004499 ORTHO05D004928 1.8e-20 104.4 285 37.9
AUR62040029 Chenopodium quinoa HOM05D004499 ORTHO05D004928 4.0e-20 103.2 332 34.3
Oeu059988.1 Olea europaea HOM05D004499 ORTHO05D004928 5.2e-20 102.8 430 32.6
Sc02g0001920 Simmondsia chinensis HOM05D004499 ORTHO05D004928 6.8e-20 102.4 261 34.9
Peaxi162Scf00005g04016 Petunia axillaris HOM05D004499 ORTHO05D004928 2.6e-19 100.5 71 73.2
SHI12538 Sapria himalayana HOM05D004499 ORTHO05D004928 1.7e-18 97.8 385 31.2
Ah.15g092180 Amaranthus hybridus HOM05D004499 ORTHO05D004928 8.3e-18 95.5 196 35.2
PSO063G6372 Papaver somniferum HOM05D004499 ORTHO05D004928 1.4e-17 94.7 308 31.5
SGA_v2.0_scaffold94G28675 Striga asiatica HOM05D004499 ORTHO05D004928 9.2e-17 92.0 320 30.9
Nn4g25115 Nelumbo nucifera HOM05D004499 ORTHO05D004928 3.5e-16 90.1 138 43.5
PSO384G2831 Papaver somniferum HOM05D004499 ORTHO05D004928 1.3e-15 88.2 338 30.2
TPR.G36959 Trifolium pratense HOM05D004499 ORTHO05D004928 3.0e-15 87.0 284 34.5
AUR62044753 Chenopodium quinoa HOM05D004499 ORTHO05D004928 5.1e-15 86.3 320 31.2
PSO339G0805 Papaver somniferum HOM05D004499 ORTHO05D004928 6.6e-15 85.9 279 34.4
ATR0602G295 Amborella trichopoda HOM05D004118 ORTHO05D004686 8.6e-15 85.5 277 35.4
EL10Ac7g16510 Beta vulgaris HOM05D007360 ORTHO05D008235 9.5e-14 82.0 157 43.3
MBI07_g32544_MAGBIO Magnolia biondii HOM05D004118 ORTHO05D004686 1.6e-13 81.3 289 37.0
Actinidia40043 Actinidia chinensis HOM05D004499 ORTHO05D004928 6.2e-13 79.3 332 31.0
TAR627G0391 Trochodendron aralioides HOM05D004118 ORTHO05D004686 4.0e-12 76.6 289 36.3
HPP92_001043 Vanilla planifolia HOM05D004499 ORTHO05D004928 5.2e-12 76.3 244 30.3
Dinv20215 Davidia involucrata HOM05D004118 ORTHO05D004686 1.1e-09 68.6 238 30.3
CSS0030924 Camellia sinensis var. sinensis HOM05D004118 ORTHO05D004686 4.1e-09 66.6 255 31.4
Actinidia07500 Actinidia chinensis HOM05D004118 ORTHO05D004686 5.4e-09 66.2 313 32.6
CSS0010936 Camellia sinensis var. sinensis HOM05D004118 ORTHO05D004686 2.7e-08 63.9 393 27.2
Medtr2g078530 Medicago truncatula HOM05D004118 ORTHO05D004686 1.3e-07 61.6 328 27.4
PSO675G0887 Papaver somniferum HOM05D004118 ORTHO05D004686 1.3e-07 61.6 303 33.3
Aqoxy1G02262 Aquilegia oxysepala HOM05D004118 ORTHO05D004686 1.7e-07 61.2 351 27.6
SEGI_08873 Sequoiadendron giganteum HOM05D004118 ORTHO05D004686 1.7e-07 61.2 340 30.3
Psat5g241400 Pisum sativum HOM05D004118 ORTHO05D004686 2.3e-07 60.8 310 26.8
VMungo1080G0043 Vigna mungo HOM05D004118 ORTHO05D004686 3.0e-07 60.5 316 32.3
Hma1.2p1_0313F.1_g121640 Hydrangea macrophylla HOM05D004118 ORTHO05D004686 3.9e-07 60.1 319 31.7
Potri.011G097700 Populus trichocarpa HOM05D004118 ORTHO05D004686 3.9e-07 60.1 312 28.2
Phvul.005G069300 Phaseolus vulgaris HOM05D004118 ORTHO05D004686 8.6e-07 58.9 316 29.7
Sabra11G0091500 Salix brachista HOM05D004118 ORTHO05D004686 8.6e-07 58.9 332 28.3
Actinidia14388 Actinidia chinensis HOM05D004499 ORTHO05D004928 1.9e-06 57.8 48 62.5
Sabra11G0090500 Salix brachista HOM05D004118 ORTHO05D004686 1.9e-06 57.8 384 26.8
Zm00001eb014970 Zea mays HOM05D004118 ORTHO05D004686 2.5e-06 57.4 303 26.1
Lalb_Chr25g0286181 Lupinus albus HOM05D004118 ORTHO05D004686 3.3e-06 57.0 314 27.4
Cpa.g.sc80.12 Carica papaya HOM05D004118 ORTHO05D004686 4.3e-06 56.6 320 28.4
Cfa020624 Carpinus fangiana HOM05D004118 ORTHO05D004686 4.3e-06 56.6 353 27.8
CiPaw.12G116800 Carya illinoinensis HOM05D004118 ORTHO05D004686 4.3e-06 56.6 302 26.8
Nn1g04275 Nelumbo nucifera HOM05D004118 ORTHO05D004686 5.6e-06 56.2 356 29.2
HanXRQChr03g0070941 Helianthus annuus HOM05D004118 ORTHO05D004686 7.3e-06 55.8 412 24.5
HanXRQChr15g0494281 Helianthus annuus HOM05D004118 ORTHO05D004686 7.3e-06 55.8 263 27.0
HPP92_002942 Vanilla planifolia HOM05D004118 ORTHO05D004686 7.3e-06 55.8 306 28.1
Manes.15G090200 Manihot esculenta HOM05D004118 ORTHO05D004686 9.6e-06 55.5 439 24.8
PGR083G2344 Punica granatum HOM05D004118 ORTHO05D004686 9.6e-06 55.5 349 28.7
QL08p023555 Quercus lobata HOM05D004118 ORTHO05D004686 9.6e-06 55.5 447 26.2


User provided reference genes

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