Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN14G2781 Fragaria x ananassa HOM05D005357 ORTHO05D006354 2.4e-270 934.9 462 100.0
FvH4_6g12190 Fragaria vesca HOM05D005357 ORTHO05D006354 7.0e-270 933.3 462 99.8
FAN09G0023 Fragaria x ananassa HOM05D005357 ORTHO05D006354 7.0e-270 933.3 462 99.8
FAN14G1666 Fragaria x ananassa HOM05D005357 ORTHO05D006354 7.0e-270 933.3 462 99.8
FAN05G3392 Fragaria x ananassa HOM05D005357 ORTHO05D006354 2.4e-262 908.3 462 97.2
FAN02G3235 Fragaria x ananassa HOM05D005357 ORTHO05D006354 2.7e-253 878.2 446 97.3
RcHm_v2.0_Chr3g0463991 Rosa chinensis HOM05D005357 ORTHO05D006354 1.7e-247 859.0 469 91.5
Prupe.6G269500 Prunus persica HOM05D005357 ORTHO05D006354 1.4e-204 716.5 482 78.0
MD12G1159000 Malus domestica HOM05D005357 ORTHO05D006354 1.1e-195 686.8 479 74.5
MD04G1145200 Malus domestica HOM05D005357 ORTHO05D006354 1.2e-192 676.8 473 74.0
CANSAT35G1827 Cannabis sativa HOM05D005357 ORTHO05D006354 8.6e-167 590.9 477 68.1
QL07p036221 Quercus lobata HOM05D005357 ORTHO05D006354 4.3e-166 588.6 485 65.4
CiPaw.09G205000 Carya illinoinensis HOM05D005357 ORTHO05D006354 9.5e-166 587.4 484 65.9
Cfa017262 Carpinus fangiana HOM05D005357 ORTHO05D006354 1.0e-164 583.9 486 65.2
Haze_20938 Corylus avellana HOM05D005357 ORTHO05D006354 3.3e-158 562.4 481 63.4
Duzib093G0024 Durio zibethinus HOM05D005357 ORTHO05D006354 2.3e-156 556.2 488 63.9
COL.COLO4_14619 Corchorus olitorius HOM05D005357 ORTHO05D006354 1.4e-153 547.0 481 63.6
Thecc.05G023500 Theobroma cacao HOM05D005357 ORTHO05D006354 3.5e-152 542.3 480 62.9
Gohir.D09G158500 Gossypium hirsutum HOM05D005357 ORTHO05D006354 1.6e-149 533.5 476 62.4
Gohir.A09G163000 Gossypium hirsutum HOM05D005357 ORTHO05D006354 6.2e-149 531.6 480 62.1
TWI77G0073 Tripterygium wilfordii HOM05D005357 ORTHO05D006354 2.0e-147 526.6 489 59.9
Duzib128G1243 Durio zibethinus HOM05D005357 ORTHO05D006354 2.9e-146 522.7 478 60.9
Gorai.006G180200 Gossypium raimondii HOM05D005357 ORTHO05D006354 4.9e-146 521.9 476 61.3
Potri.006G095600 Populus trichocarpa HOM05D005357 ORTHO05D006354 1.1e-145 520.8 473 63.4
Ciclev10011563m.g Citrus clementina HOM05D005357 ORTHO05D006354 1.4e-145 520.4 488 61.9
TAR633G0560 Trochodendron aralioides HOM05D005357 ORTHO05D006354 9.2e-145 517.7 510 58.6
Peaxi162Scf00141g00133 Petunia axillaris HOM05D005357 ORTHO05D006354 2.1e-144 516.5 492 59.1
Actinidia29139 Actinidia chinensis HOM05D005357 ORTHO05D006354 3.0e-143 512.7 488 58.6
Hma1.2p1_0703F.1_g206335 Hydrangea macrophylla HOM05D005357 ORTHO05D006354 3.0e-143 512.7 490 61.4
Nitab4.5_0006254g0010 Nicotiana tabacum HOM05D005357 ORTHO05D006354 5.1e-143 511.9 488 59.4
Duzib106G1773 Durio zibethinus HOM05D005357 ORTHO05D006354 2.5e-142 509.6 480 60.6
Actinidia13789 Actinidia chinensis HOM05D005357 ORTHO05D006354 3.3e-142 509.2 489 57.5
Dinv37091 Davidia involucrata HOM05D005357 ORTHO05D006354 8.1e-141 504.6 487 59.3
ClCG10G021740 Citrullus lanatus HOM05D005357 ORTHO05D006354 2.3e-140 503.1 481 57.6
Manes.08G086900 Manihot esculenta HOM05D005357 ORTHO05D006354 7.6e-139 498.0 476 61.6
TAR636G3085 Trochodendron aralioides HOM05D005357 ORTHO05D006354 3.8e-138 495.7 483 58.0
TWI74G0304 Tripterygium wilfordii HOM05D005357 ORTHO05D006354 3.2e-137 492.7 449 61.7
Cpa.g.sc312.3 Carica papaya HOM05D005357 ORTHO05D006354 7.1e-137 491.5 483 59.6
Cc06_g01760 Coffea canephora HOM05D005357 ORTHO05D006354 9.6e-134 481.1 487 56.7
Nn1g02852 Nelumbo nucifera HOM05D005357 ORTHO05D006354 9.6e-134 481.1 502 55.6
CsaV3_3G034230 Cucumis sativus L. HOM05D005357 ORTHO05D006354 1.1e-132 477.6 482 56.2
Nitab4.5_0000008g0560 Nicotiana tabacum HOM05D005357 ORTHO05D006354 4.4e-131 472.2 490 56.5
Eucgr.B02762 Eucalyptus grandis HOM05D005357 ORTHO05D006354 9.9e-131 471.1 498 56.4
CAN.G284.13 Capsicum annuum HOM05D005357 ORTHO05D006354 2.2e-130 469.9 493 55.4
Sed0007832 Sechium edule HOM05D005357 ORTHO05D006354 6.4e-130 468.4 420 59.5
Glyma.07G144300 Glycine max HOM05D005357 ORTHO05D006354 3.3e-126 456.1 474 55.7
Gohir.A04G087700 Gossypium hirsutum HOM05D005357 ORTHO05D006354 9.6e-126 454.5 378 64.3
arahy.Tifrunner.gnm1.ann1.H8VZ0K Arachis hypogaea HOM05D005357 ORTHO05D006354 3.6e-125 452.6 474 56.8
Gorai.012G111100 Gossypium raimondii HOM05D005357 ORTHO05D006354 3.1e-124 449.5 383 63.4
Phvul.008G108800 Phaseolus vulgaris HOM05D005357 ORTHO05D006354 4.0e-124 449.1 474 55.3
Glyma.18G195500 Glycine max HOM05D005357 ORTHO05D006354 4.5e-123 445.7 475 54.5
MBI06_g17209_MAGBIO Magnolia biondii HOM05D005357 ORTHO05D006354 4.5e-123 445.7 507 52.1
arahy.Tifrunner.gnm1.ann1.5ZZ6F4 Arachis hypogaea HOM05D005357 ORTHO05D006354 9.9e-123 444.5 493 54.8
MELO3C009198.2 Cucumis melo HOM05D005357 ORTHO05D006354 1.3e-122 444.1 476 53.4
Sabra06G0073400 Salix brachista HOM05D005357 ORTHO05D006354 6.4e-122 441.8 567 50.1
Medtr7g066710 Medicago truncatula HOM05D005357 ORTHO05D006354 9.3e-121 438.0 474 56.5
Medtr7g056183 Medicago truncatula HOM05D005357 ORTHO05D006354 1.8e-119 433.7 475 55.4
PSO384G3148 Papaver somniferum HOM05D005357 ORTHO05D006354 1.8e-119 433.7 492 51.0
Lalb_Chr03g0042941 Lupinus albus HOM05D005357 ORTHO05D006354 1.9e-118 430.3 474 54.9
Lj3g0024478 Lotus japonicus HOM05D005357 ORTHO05D006354 2.5e-118 429.9 476 55.0
Lalb_Chr01g0022881 Lupinus albus HOM05D005357 ORTHO05D006354 2.1e-117 426.8 473 53.9
AUR62011861 Chenopodium quinoa HOM05D005357 ORTHO05D006354 4.8e-117 425.6 390 60.5
Ca_09168_v3 Cicer arietinum L. HOM05D005357 ORTHO05D006354 1.1e-116 424.5 474 53.8
EL10As5g23477 Beta vulgaris HOM05D005357 ORTHO05D006354 5.3e-116 422.2 391 59.6
Gohir.D04G128100 Gossypium hirsutum HOM05D005357 ORTHO05D006354 5.8e-115 418.7 383 60.6
SalBow3G4061 Salvia bowleyana HOM05D005357 ORTHO05D006354 7.6e-115 418.3 475 53.3
PSO585G0030 Papaver somniferum HOM05D005357 ORTHO05D006354 9.9e-115 417.9 486 50.0
Lj2A78G31 Lonicera japonica HOM05D005357 ORTHO05D006354 1.7e-114 417.2 477 54.1
AUR62024704 Chenopodium quinoa HOM05D005357 ORTHO05D006354 2.2e-114 416.8 390 59.5
vmacro01296 Vaccinium macrocarpon HOM05D005357 ORTHO05D006354 3.8e-114 416.0 484 52.9
Aqoxy1G00739 Aquilegia oxysepala HOM05D005357 ORTHO05D006354 6.4e-114 415.2 501 52.3
TPR.G1557 Trifolium pratense HOM05D005357 ORTHO05D006354 8.4e-114 414.8 387 60.2
PGSC0003DMG402020324 Solanum tuberosum HOM05D005357 ORTHO05D006354 4.6e-112 409.1 482 51.7
GSVIVG01034021001 Vitis vinifera HOM05D005357 ORTHO05D006354 3.0e-111 406.4 369 59.3
PGR031G1436 Punica granatum HOM05D005357 ORTHO05D006354 1.1e-110 404.4 513 50.5
Sopen09g006960 Solanum pennellii HOM05D005357 ORTHO05D006354 1.2e-107 394.4 476 51.5
Migut.J00234 Erythranthe guttata HOM05D005357 ORTHO05D006354 2.9e-106 389.8 471 51.4
Dinv03649 Davidia involucrata HOM05D005357 ORTHO05D006354 2.1e-104 383.6 392 57.9
THA.LOC104827038 Tarenaya hassleriana HOM05D005357 ORTHO05D006354 3.5e-104 382.9 476 51.3
MSTRG.5603 Avicennia marina HOM05D005357 ORTHO05D006354 7.9e-104 381.7 484 49.8
Ah.11g049570 Amaranthus hybridus HOM05D005357 ORTHO05D006354 4.3e-102 375.9 404 56.2
DCAR_005589 Daucus carota HOM05D005357 ORTHO05D006354 1.5e-99 367.5 494 48.0
Hund09607 Selenicereus undatus HOM05D005357 ORTHO05D006354 2.0e-99 367.1 392 53.8
CSS0020158 Camellia sinensis var. sinensis HOM05D005357 ORTHO05D006354 2.1e-96 357.1 373 55.8
Hund02920 Selenicereus undatus HOM05D005357 ORTHO05D006354 3.6e-96 356.3 387 54.3
Aa31LG1G22800 Aethionema arabicum HOM05D005357 ORTHO05D006354 1.8e-95 354.0 478 48.1
Oeu030537.4 Olea europaea HOM05D005357 ORTHO05D006354 8.7e-95 351.7 455 47.9
SGA_v2.0_scaffold85G26772 Striga asiatica HOM05D005357 ORTHO05D006354 5.7e-94 349.0 455 49.0
Sp6g40520 Schrenkiella parvula HOM05D005357 ORTHO05D006354 6.3e-93 345.5 380 54.2
Carub.0006s0073 Capsella rubella HOM05D005357 ORTHO05D006354 9.1e-92 341.7 392 52.6
CARHR211480 Cardamine hirsuta HOM05D005357 ORTHO05D006354 1.7e-90 337.4 380 53.7
Thhalv10014073m.g Eutrema salsugineum HOM05D005357 ORTHO05D006354 1.1e-89 334.7 373 53.4
Atru.chr8.2135 Acer truncatum HOM05D005357 ORTHO05D006354 4.2e-89 332.8 370 56.5
HPP92_021066 Vanilla planifolia HOM05D005357 ORTHO05D006354 4.2e-89 332.8 504 44.8
AT5G01160 Arabidopsis thaliana HOM05D005357 ORTHO05D006354 2.7e-88 330.1 384 52.3
AL6G11040 Arabidopsis lyrata HOM05D005357 ORTHO05D006354 3.0e-87 326.6 382 52.4
A10p33610 Brassica napus HOM05D005357 ORTHO05D006354 5.7e-86 322.4 384 51.6
Sc05g0000650 Simmondsia chinensis HOM05D005357 ORTHO05D006354 1.4e-84 317.8 322 56.2
BcaB05g21942 Brassica carinata HOM05D005357 ORTHO05D006354 3.1e-84 316.6 403 50.4
CDE04G3126 Ceratophyllum demersum HOM05D005357 ORTHO05D006354 1.5e-83 314.3 453 44.6
Os10g0494500 Oryza sativa ssp. japonica HOM05D005357 ORTHO05D006354 1.0e-82 311.6 440 45.7
C09p74540 Brassica napus HOM05D005357 ORTHO05D006354 3.2e-81 306.6 380 50.3
BolC9t60186H Brassica oleracea HOM05D005357 ORTHO05D006354 9.4e-81 305.1 380 50.3
BraA10t45393Z Brassica rapa HOM05D005357 ORTHO05D006354 1.6e-80 304.3 381 49.6
Psat3g131000 Pisum sativum HOM05D005357 ORTHO05D006354 6.7e-79 298.9 390 49.7
BcaNung02762 Brassica carinata HOM05D005357 ORTHO05D006354 2.6e-78 297.0 399 48.1
HanXRQChr13g0406371 Helianthus annuus HOM05D005357 ORTHO05D006354 5.7e-78 295.8 470 42.3
Oeu044369.1 Olea europaea HOM05D005357 ORTHO05D006354 5.7e-78 295.8 420 44.8
SGA_v2.0_scaffold75G24995 Striga asiatica HOM05D005357 ORTHO05D006354 1.7e-77 294.3 273 58.6
CDE03G0086 Ceratophyllum demersum HOM05D005357 ORTHO05D006354 2.4e-76 290.4 450 42.7
PGSC0003DMG400002411 Solanum tuberosum HOM05D005357 ORTHO05D006354 5.3e-76 289.3 376 48.9
Zm00001eb044800 Zea mays HOM05D005357 ORTHO05D006354 7.0e-76 288.9 445 44.3
ECA248G2096 Erigeron canadensis HOM05D005357 ORTHO05D006354 2.0e-75 287.3 385 48.3
BcaNung02766 Brassica carinata HOM05D005357 ORTHO05D006354 2.2e-74 283.9 397 47.1
VMungo1383G1762 Vigna mungo HOM05D005357 ORTHO05D006354 2.6e-70 270.4 354 48.3
Lsat_1_v5_gn_5_155380 Lactuca sativa HOM05D005357 ORTHO05D006354 1.1e-65 255.0 355 47.6
unitig_22.g6590 Utricularia gibba HOM05D005357 ORTHO05D006354 2.0e-62 244.2 471 38.6
Solyc09g013120.4 Solanum lycopersicum HOM05D005357 ORTHO05D006354 7.5e-62 242.3 377 44.8
Zm00001eb221140 Zea mays HOM05D005357 ORTHO05D006354 2.7e-59 233.8 242 55.4
HanXRQChr13g0397571 Helianthus annuus HOM05D005357 ORTHO05D006354 1.5e-57 228.0 378 41.5
SHI12776 Sapria himalayana HOM05D005357 ORTHO05D006354 2.3e-55 220.7 454 39.0
HanXRQChr13g0397921 Helianthus annuus HOM05D005357 ORTHO05D006354 5.2e-55 219.5 223 51.6
SEGI_31043 Sequoiadendron giganteum HOM05D005357 ORTHO05D006354 4.7e-48 196.4 220 48.2
DCAR_008325 Daucus carota HOM05D005357 ORTHO05D006354 4.0e-47 193.4 213 47.9
Hma1.2p1_0125F.1_g058510 Hydrangea macrophylla HOM05D005357 ORTHO05D006354 1.3e-42 178.3 356 38.5
Atru.chr8.2134 Acer truncatum HOM05D005357 ORTHO05D006354 9.5e-41 172.2 108 78.7
ATR0605G041 Amborella trichopoda HOM05D005357 ORTHO05D006354 3.2e-36 157.1 379 33.5
Mapoly0068s0057 Marchantia polymorpha HOM05D005357 ORTHO05D006354 3.2e-36 157.1 140 51.4
Pp3c20_10060 Physcomitrium patens HOM05D005357 ORTHO05D006354 1.2e-32 145.2 227 37.9
Pp3c23_4130 Physcomitrium patens HOM05D005357 ORTHO05D006354 3.6e-32 143.7 258 35.7
Pp3c8_18230 Physcomitrium patens HOM05D005357 ORTHO05D006354 5.8e-30 136.3 161 41.6
Glyma.18G195800 Glycine max HOM05D005357 ORTHO05D006354 4.9e-29 133.3 229 39.3
CBR_g24154 Chara braunii HOM05D005357 ORTHO05D006354 7.3e-25 119.4 106 47.2
Oeu055280.1 Olea europaea HOM05D005357 ORTHO05D006354 1.8e-23 114.8 242 38.0
Rhsim01G0256700 Rhododendron simsii HOM05D005357 ORTHO05D004574 4.4e-22 110.2 163 44.8
PGSC0003DMG401020324 Solanum tuberosum HOM05D005357 ORTHO05D006354 4.4e-22 110.2 115 52.2
SEGI_08495 Sequoiadendron giganteum HOM05D054687 ORTHO05D006354 5.8e-22 109.8 441 28.8
CSS0030830 Camellia sinensis var. sinensis HOM05D005357 ORTHO05D006354 2.4e-15 87.8 68 67.6
RcHm_v2.0_Chr3g0492291 Rosa chinensis HOM05D005357 ORTHO05D006354 7.6e-06 56.2 52 67.3


User provided reference genes

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