Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN14G2695 Fragaria x ananassa HOM05D004436 ORTHO05D005179 1.1e-262 909.4 473 100.0
FvH4_6g34180 Fragaria vesca HOM05D004436 ORTHO05D005179 9.8e-235 816.6 473 92.0
FAN02G3564 Fragaria x ananassa HOM05D004436 ORTHO05D005179 8.6e-231 803.5 473 90.5
FAN05G5343 Fragaria x ananassa HOM05D004436 ORTHO05D005179 4.3e-230 801.2 473 89.9
FAN09G2135 Fragaria x ananassa HOM05D004436 ORTHO05D005179 8.9e-228 793.5 473 89.4
RcHm_v2.0_Chr2g0144531 Rosa chinensis HOM05D004436 ORTHO05D005179 6.9e-204 714.1 471 80.9
FAN26G0630 Fragaria x ananassa HOM05D004436 ORTHO05D005179 8.7e-199 697.2 473 78.9
RcHm_v2.0_Chr2g0166351 Rosa chinensis HOM05D004436 ORTHO05D005179 4.4e-158 562.0 446 67.5
FvH4_6g47280 Fragaria vesca HOM05D004436 ORTHO05D005179 2.8e-149 532.7 445 66.3
Prupe.3G044800 Prunus persica HOM05D004436 ORTHO05D005179 6.0e-123 445.3 473 53.5
MD09G1187900 Malus domestica HOM05D004436 ORTHO05D005179 1.4e-119 434.1 475 52.0
FAN24G2018 Fragaria x ananassa HOM05D004436 ORTHO05D005179 1.4e-116 424.1 422 58.1
CiPaw.01G221800 Carya illinoinensis HOM05D004436 ORTHO05D005179 7.0e-116 421.8 434 52.5
CiPaw.05G181900 Carya illinoinensis HOM05D004436 ORTHO05D005179 1.5e-113 414.1 477 50.1
Sed0007780 Sechium edule HOM05D004436 ORTHO05D005179 7.1e-108 395.2 449 49.9
Lj5A40G74 Lonicera japonica HOM05D004436 ORTHO05D005179 3.0e-106 389.8 432 49.8
GSVIVG01016817001 Vitis vinifera HOM05D004436 ORTHO05D005179 6.6e-106 388.7 429 51.0
Rhsim08G0236100 Rhododendron simsii HOM05D004436 ORTHO05D005179 2.5e-105 386.7 438 48.2
MELO3C024372.2 Cucumis melo HOM05D004436 ORTHO05D005179 1.2e-104 384.4 433 50.3
ClCG09G000840 Citrullus lanatus HOM05D004436 ORTHO05D005179 1.6e-104 384.0 436 50.5
CsaV3_7G034640 Cucumis sativus L. HOM05D004436 ORTHO05D005179 2.1e-104 383.6 433 50.3
CANSAT56G1493 Cannabis sativa HOM05D004436 ORTHO05D005179 1.8e-103 380.6 426 51.2
Eucgr.F03167 Eucalyptus grandis HOM05D004436 ORTHO05D005179 2.4e-103 380.2 437 48.5
TWI23G0436 Tripterygium wilfordii HOM05D004436 ORTHO05D005179 5.2e-103 379.0 443 49.4
Cpa.g.sc25.86 Carica papaya HOM05D004436 ORTHO05D005179 1.9e-100 370.5 453 47.7
Potri.001G198600 Populus trichocarpa HOM05D004436 ORTHO05D005179 1.9e-100 370.5 462 45.5
Dinv03512 Davidia involucrata HOM05D004436 ORTHO05D005179 4.1e-100 369.4 437 49.0
Ciclev10025597m.g Citrus clementina HOM05D004436 ORTHO05D005179 7.1e-100 368.6 438 48.4
Lj6g0016044 Lotus japonicus HOM05D004436 ORTHO05D005179 1.2e-99 367.9 476 42.9
Haze_15997 Corylus avellana HOM05D004436 ORTHO05D005179 1.6e-99 367.5 515 44.3
TAR375G0086 Trochodendron aralioides HOM05D004436 ORTHO05D005179 1.0e-98 364.8 447 45.6
vmacro22224 Vaccinium macrocarpon HOM05D004436 ORTHO05D005179 1.0e-98 364.8 432 47.5
FvH4_2g14600 Fragaria vesca HOM05D004436 ORTHO05D005179 1.3e-98 364.4 336 61.3
Sed0020704 Sechium edule HOM05D004436 ORTHO05D005179 3.9e-98 362.8 431 47.1
Sabra01G0155800 Salix brachista HOM05D004436 ORTHO05D005179 6.6e-98 362.1 445 45.4
Manes.11G023100 Manihot esculenta HOM05D004436 ORTHO05D005179 8.7e-98 361.7 466 44.6
CAN.G540.4 Capsicum annuum HOM05D004436 ORTHO05D005179 1.9e-97 360.5 431 46.9
CSS0015890 Camellia sinensis var. sinensis HOM05D004436 ORTHO05D005179 7.3e-97 358.6 427 48.7
PGSC0003DMG400016304 Solanum tuberosum HOM05D004436 ORTHO05D005179 2.1e-96 357.1 430 47.7
Actinidia32167 Actinidia chinensis HOM05D004436 ORTHO05D005179 8.1e-96 355.1 443 46.0
Manes.04G142200 Manihot esculenta HOM05D004436 ORTHO05D005179 8.1e-96 355.1 493 42.8
Sc12g0010440 Simmondsia chinensis HOM05D004436 ORTHO05D005179 1.4e-95 354.4 434 46.1
Nitab4.5_0000035g0090 Nicotiana tabacum HOM05D004436 ORTHO05D005179 2.4e-95 353.6 431 46.6
Dinv30366 Davidia involucrata HOM05D004436 ORTHO05D005179 6.9e-95 352.1 392 51.0
Peaxi162Scf00943g00014 Petunia axillaris HOM05D004436 ORTHO05D005179 9.0e-95 351.7 438 44.3
Thecc.03G227200 Theobroma cacao HOM05D004436 ORTHO05D005179 9.9e-94 348.2 455 44.8
Solyc06g053330.4 Solanum lycopersicum HOM05D004436 ORTHO05D005179 2.9e-93 346.7 430 46.7
Sopen06g018390 Solanum pennellii HOM05D004436 ORTHO05D005179 2.9e-93 346.7 430 46.5
Duzib205G0267 Durio zibethinus HOM05D004436 ORTHO05D005179 4.9e-93 345.9 482 44.6
Glyma.15G165300 Glycine max HOM05D004436 ORTHO05D005179 8.4e-93 345.1 426 46.2
Hma1.2p1_0496F.1_g166100 Hydrangea macrophylla HOM05D004436 ORTHO05D005179 1.1e-92 344.7 450 44.9
THA.LOC104804933 Tarenaya hassleriana HOM05D004436 ORTHO05D005179 3.2e-92 343.2 438 46.3
Atru.chr1.3808 Acer truncatum HOM05D004436 ORTHO05D005179 4.2e-92 342.8 417 49.2
Peaxi162Scf00647g00219 Petunia axillaris HOM05D004436 ORTHO05D005179 4.2e-92 342.8 430 43.3
CSS0033207 Camellia sinensis var. sinensis HOM05D004436 ORTHO05D005179 1.2e-91 341.3 427 47.1
Oeu044709.1 Olea europaea HOM05D004436 ORTHO05D005179 1.6e-91 340.9 435 45.3
Lalb_Chr08g0233321 Lupinus albus HOM05D004436 ORTHO05D005179 5.1e-90 335.9 466 42.5
COL.COLO4_30482 Corchorus olitorius HOM05D004436 ORTHO05D005179 1.9e-89 334.0 451 44.1
Lsat_1_v5_gn_5_135221 Lactuca sativa HOM05D004436 ORTHO05D005179 1.9e-89 334.0 435 42.1
Nitab4.5_0012713g0010 Nicotiana tabacum HOM05D004436 ORTHO05D005179 1.9e-89 334.0 430 45.1
Oeu047041.1 Olea europaea HOM05D004436 ORTHO05D005179 2.5e-89 333.6 425 45.4
PGR119G1065 Punica granatum HOM05D004436 ORTHO05D005179 3.3e-89 333.2 440 46.1
HanXRQChr10g0312341 Helianthus annuus HOM05D004436 ORTHO05D005179 3.6e-88 329.7 431 43.6
MD17G1172300 Malus domestica HOM05D004436 ORTHO05D005179 3.6e-88 329.7 389 48.3
arahy.Tifrunner.gnm1.ann1.4RDH3B Arachis hypogaea HOM05D004436 ORTHO05D005179 5.3e-87 325.9 435 43.4
Gohir.D03G171700 Gossypium hirsutum HOM05D004436 ORTHO05D005179 5.3e-87 325.9 448 44.6
Gorai.003G182300 Gossypium raimondii HOM05D004436 ORTHO05D005179 6.9e-87 325.5 448 44.6
arahy.Tifrunner.gnm1.ann1.0TY6IG Arachis hypogaea HOM05D004436 ORTHO05D005179 1.2e-86 324.7 435 43.4
MSTRG.22562 Avicennia marina HOM05D004436 ORTHO05D005179 1.5e-86 324.3 463 42.5
Aa31LG8G1130 Aethionema arabicum HOM05D004436 ORTHO05D005179 2.0e-86 323.9 451 43.9
QL05p009436 Quercus lobata HOM05D004436 ORTHO05D005179 3.4e-86 323.2 652 35.7
ECA234G4408 Erigeron canadensis HOM05D004436 ORTHO05D005179 2.2e-85 320.5 426 43.2
Hund20819 Selenicereus undatus HOM05D004436 ORTHO05D005179 2.9e-85 320.1 435 44.4
Ca_02096_v3 Cicer arietinum L. HOM05D004436 ORTHO05D005179 4.9e-85 319.3 429 43.4
Migut.D00948 Erythranthe guttata HOM05D004436 ORTHO05D005179 4.9e-85 319.3 448 42.2
Gohir.A03G000500 Gossypium hirsutum HOM05D004436 ORTHO05D005179 1.4e-84 317.8 448 44.0
Thhalv10020760m.g Eutrema salsugineum HOM05D004436 ORTHO05D005179 2.7e-83 313.5 436 42.2
DCAR_026403 Daucus carota HOM05D004436 ORTHO05D005179 3.5e-83 313.2 438 41.8
Rhsim10G0150900 Rhododendron simsii HOM05D004436 ORTHO05D005179 1.8e-82 310.8 542 36.7
COL.COLO4_17027 Corchorus olitorius HOM05D004436 ORTHO05D005179 5.1e-82 309.3 383 46.5
Sp3g12180 Schrenkiella parvula HOM05D004436 ORTHO05D005179 1.9e-81 307.4 462 40.0
Phvul.009G236700 Phaseolus vulgaris HOM05D004436 ORTHO05D005179 3.3e-81 306.6 436 43.3
TPR.G13789 Trifolium pratense HOM05D004436 ORTHO05D005179 4.3e-81 306.2 442 43.7
Cc04_g01610 Coffea canephora HOM05D004436 ORTHO05D005179 7.4e-81 305.4 351 48.4
SGA_v2.0_scaffold68G22895 Striga asiatica HOM05D004436 ORTHO05D005179 5.3e-79 299.3 420 41.4
Medtr2g037880 Medicago truncatula HOM05D004436 ORTHO05D005179 1.5e-78 297.7 446 40.6
Medtr7g104810 Medicago truncatula HOM05D004436 ORTHO05D005179 9.9e-78 295.0 462 42.0
Carub.0003s1351 Capsella rubella HOM05D004436 ORTHO05D005179 2.2e-77 293.9 467 38.8
AL3G26120 Arabidopsis lyrata HOM05D004436 ORTHO05D005179 4.9e-77 292.7 480 37.9
FAN27G1625 Fragaria x ananassa HOM05D004436 ORTHO05D005179 4.9e-77 292.7 408 46.3
Aqoxy2G00706 Aquilegia oxysepala HOM05D004436 ORTHO05D005179 1.1e-76 291.6 439 39.6
Psat1g144000 Pisum sativum HOM05D004436 ORTHO05D005179 1.4e-76 291.2 432 40.5
Ah.07g197300 Amaranthus hybridus HOM05D004436 ORTHO05D005179 9.3e-76 288.5 435 40.9
AUR62009860 Chenopodium quinoa HOM05D004436 ORTHO05D005179 1.2e-75 288.1 435 38.4
CARHR088750 Cardamine hirsuta HOM05D004436 ORTHO05D005179 1.8e-74 284.3 460 38.5
BraA01t04010Z Brassica rapa HOM05D004436 ORTHO05D005179 5.1e-74 282.7 438 40.0
BcaB04g20967 Brassica carinata HOM05D004436 ORTHO05D005179 6.7e-74 282.3 439 39.4
AT3G13940 Arabidopsis thaliana HOM05D004436 ORTHO05D005179 8.7e-74 282.0 466 37.1
Medtr2g037460 Medicago truncatula HOM05D004436 ORTHO05D005179 1.1e-73 281.6 431 40.1
BcaC09g48383 Brassica carinata HOM05D004436 ORTHO05D005179 2.5e-73 280.4 438 39.7
C01p50660 Brassica napus HOM05D004436 ORTHO05D005179 2.5e-73 280.4 438 39.7
BolC1t05015H Brassica oleracea HOM05D004436 ORTHO05D005179 2.5e-73 280.4 438 39.7
A01p39710 Brassica napus HOM05D004436 ORTHO05D005179 3.3e-73 280.0 438 39.7
CDE07G0038 Ceratophyllum demersum HOM05D004436 ORTHO05D005179 1.3e-72 278.1 455 39.1
AUR62001510 Chenopodium quinoa HOM05D004436 ORTHO05D005179 4.8e-72 276.2 461 36.4
EL10Ac7g16380 Beta vulgaris HOM05D004436 ORTHO05D005179 1.1e-71 275.0 449 37.0
PSO724G1089 Papaver somniferum HOM05D004436 ORTHO05D005179 2.6e-70 270.4 441 39.5
FAN09G3702 Fragaria x ananassa HOM05D002326 ORTHO05D005179 5.8e-70 269.2 433 44.6
EL10Ac7g16378 Beta vulgaris HOM05D004436 ORTHO05D005179 1.7e-69 267.7 449 37.0
PSO135G0558 Papaver somniferum HOM05D004436 ORTHO05D005179 2.9e-69 266.9 443 38.8
Actinidia21779 Actinidia chinensis HOM05D004436 ORTHO05D005179 4.9e-69 266.2 442 39.4
FAN02G4131 Fragaria x ananassa HOM05D002326 ORTHO05D005179 2.7e-67 260.4 434 44.0
unitig_26.g9010 Utricularia gibba HOM05D000572 ORTHO05D002399 6.0e-67 259.2 446 39.2
Peaxi162Scf00060g02815 Petunia axillaris HOM05D004436 ORTHO05D005179 5.1e-66 256.1 436 37.6
Nn6g35749 Nelumbo nucifera HOM05D004436 ORTHO05D005179 4.3e-65 253.1 437 37.8
FAN15G1241 Fragaria x ananassa HOM05D004436 ORTHO05D005179 1.6e-64 251.1 428 40.2
Nitab4.5_0004287g0020 Nicotiana tabacum HOM05D004436 ORTHO05D005179 4.2e-60 236.5 292 46.2
FAN14G5104 Fragaria x ananassa HOM05D002326 ORTHO05D005179 3.6e-59 233.4 264 53.8
ATR0762G049 Amborella trichopoda HOM05D004436 ORTHO05D005179 6.3e-56 222.6 479 34.2
Lj6g0018808 Lotus japonicus HOM05D004436 ORTHO05D005179 3.8e-53 213.4 282 41.8
HPP92_009424 Vanilla planifolia HOM05D004436 ORTHO05D005179 1.4e-52 211.5 441 37.0
FAN20G3048 Fragaria x ananassa HOM05D004436 ORTHO05D005179 2.0e-49 201.1 285 46.7
TPR.G16505 Trifolium pratense HOM05D004436 ORTHO05D005179 4.1e-47 193.4 239 44.8
Ca_27339_v3 Cicer arietinum L. HOM05D004436 ORTHO05D005179 7.7e-46 189.1 316 37.3
Carub.0003s3547 Capsella rubella HOM05D004436 ORTHO05D005179 3.8e-45 186.8 395 34.2
THA.LOC104822769 Tarenaya hassleriana HOM05D004436 ORTHO05D005179 8.5e-45 185.7 236 46.2
Zm00001eb166800 Zea mays HOM05D004436 ORTHO05D005179 3.6e-43 180.3 442 35.3
Os11g0615100 Oryza sativa ssp. japonica HOM05D004436 ORTHO05D005179 3.9e-42 176.8 437 34.6
Ah.08g216510 Amaranthus hybridus HOM05D004436 ORTHO05D005179 5.7e-41 172.9 349 35.8
AagrBONN_evm.TU.Sc2ySwM_368.2707 Anthoceros agrestis HOM05D004436 ORTHO05D005179 3.0e-34 150.6 482 28.0
Pp3c8_24340 Physcomitrium patens HOM05D004436 ORTHO05D005179 6.7e-34 149.4 467 27.8
DCAR_023423 Daucus carota HOM05D004436 ORTHO05D005179 1.2e-33 148.7 273 34.8
Aqoxy7G00272 Aquilegia oxysepala HOM05D004436 ORTHO05D005179 1.5e-33 148.3 233 39.5
Aqoxy2G02914 Aquilegia oxysepala HOM05D004436 ORTHO05D005179 2.8e-32 144.1 137 52.6
SEGI_22335 Sequoiadendron giganteum HOM05D004436 ORTHO05D005179 4.8e-32 143.3 296 32.8
SEGI_28110 Sequoiadendron giganteum HOM05D004436 ORTHO05D005179 1.0e-26 125.6 356 28.1
Oeu004353.1 Olea europaea HOM05D004436 ORTHO05D005179 5.7e-25 119.8 108 55.6
FAN14G1374 Fragaria x ananassa HOM05D004436 ORTHO05D005179 8.3e-24 115.9 158 47.5
Haze_06394 Corylus avellana HOM05D004436 ORTHO05D005179 1.1e-23 115.5 219 37.9
THA.LOC104822775 Tarenaya hassleriana HOM05D004436 ORTHO05D005179 2.7e-22 110.9 158 42.4
CBR_g45967 Chara braunii HOM05D004436 ORTHO05D005179 1.7e-21 108.2 459 25.9
TPR.G16496 Trifolium pratense HOM05D004436 ORTHO05D005179 1.1e-20 105.5 178 35.4
Dinv21190 Davidia involucrata HOM05D004436 ORTHO05D005179 3.6e-19 100.5 108 50.9
AUR62000997 Chenopodium quinoa HOM05D004436 ORTHO05D005179 6.1e-19 99.8 199 34.2
ATR0185G001 Amborella trichopoda HOM05D004436 ORTHO05D005179 1.4e-18 98.6 163 38.0
Mapoly0063s0055 Marchantia polymorpha HOM05D004436 ORTHO05D005179 1.5e-17 95.1 373 26.3
PGSC0003DMG400002436 Solanum tuberosum HOM05D004436 ORTHO05D005179 3.7e-16 90.5 90 56.7
AL1G64440 Arabidopsis lyrata HOM05D004436 ORTHO05D005179 2.3e-13 81.3 180 33.3
Aqoxy2G02915 Aquilegia oxysepala HOM05D004436 ORTHO05D005179 2.1e-11 74.7 143 37.8
Peaxi162Scf01131g00007 Petunia axillaris HOM05D004436 ORTHO05D005179 5.2e-10 70.1 132 34.8
SEGI_36774 Sequoiadendron giganteum HOM05D004436 ORTHO05D005179 5.2e-10 70.1 107 32.7
FAN05G3968 Fragaria x ananassa HOM05D004436 ORTHO05D005179 4.9e-08 63.5 55 56.4
SMO144G0124 Selaginella moellendorffii HOM05D004436 ORTHO05D005179 2.7e-06 57.8 90 37.8
PSO017G0055 Papaver somniferum HOM05D004436 ORTHO05D005179 3.5e-06 57.4 122 32.0
Psat6g077080 Pisum sativum HOM05D001891 ORTHO05D005832 3.5e-06 57.4 92 32.6
Psat6g077120 Pisum sativum HOM05D001891 ORTHO05D005832 3.5e-06 57.4 92 32.6


User provided reference genes

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