Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN14G2576 Fragaria x ananassa HOM05D002897 ORTHO05D008718 2.0e-127 459.1 239 100.0
FvH4_6g42620 Fragaria vesca HOM05D002897 ORTHO05D008718 1.1e-93 347.1 251 78.1
FAN05G4893 Fragaria x ananassa HOM05D002897 ORTHO05D008718 1.6e-92 343.2 251 77.3
FAN02G2770 Fragaria x ananassa HOM05D002897 ORTHO05D008718 8.0e-92 340.9 251 76.9
RcHm_v2.0_Chr2g0158471 Rosa chinensis HOM05D002897 ORTHO05D008718 1.7e-78 296.6 255 67.8
Prupe.3G212700 Prunus persica HOM05D002897 ORTHO05D008718 6.2e-68 261.5 259 60.2
Manes.13G067751 Manihot esculenta HOM05D002897 ORTHO05D008718 2.2e-65 253.1 256 59.4
Manes.13G067750 Manihot esculenta HOM05D002897 ORTHO05D008718 5.4e-64 248.4 256 58.6
QL08p031170 Quercus lobata HOM05D002897 ORTHO05D008718 3.5e-63 245.7 257 55.3
Gorai.007G171100 Gossypium raimondii HOM05D002897 ORTHO05D008718 4.6e-63 245.4 252 56.0
Gohir.D11G160500 Gossypium hirsutum HOM05D002897 ORTHO05D008718 6.0e-63 245.0 252 56.0
Haze_12787 Corylus avellana HOM05D002897 ORTHO05D008718 2.3e-62 243.0 277 53.4
Cfa014332 Carpinus fangiana HOM05D002897 ORTHO05D008718 6.6e-62 241.5 258 56.2
Duzib138G1172 Durio zibethinus HOM05D002897 ORTHO05D008718 1.9e-61 240.0 245 57.1
Nn1g07262 Nelumbo nucifera HOM05D002897 ORTHO05D008718 2.5e-61 239.6 256 55.5
CiPaw.03G157200 Carya illinoinensis HOM05D002897 ORTHO05D008718 5.6e-61 238.4 258 54.7
Gohir.A11G153700 Gossypium hirsutum HOM05D002897 ORTHO05D008718 5.6e-61 238.4 254 54.7
Thecc.01G180000 Theobroma cacao HOM05D002897 ORTHO05D008718 5.6e-61 238.4 253 56.1
GSVIVG01030483001 Vitis vinifera HOM05D002897 ORTHO05D008718 7.3e-61 238.0 256 54.3
Potri.014G156700 Populus trichocarpa HOM05D002897 ORTHO05D008718 1.2e-60 237.3 258 56.2
Cpa.g.sc132.3 Carica papaya HOM05D002897 ORTHO05D008718 3.6e-60 235.7 254 56.3
ClCG02G002140 Citrullus lanatus HOM05D002897 ORTHO05D008718 6.2e-60 235.0 257 53.7
TAR624G0001 Trochodendron aralioides HOM05D002897 ORTHO05D008718 1.8e-59 233.4 255 54.5
Dinv39736 Davidia involucrata HOM05D002897 ORTHO05D008718 3.1e-59 232.6 257 54.1
Actinidia09731 Actinidia chinensis HOM05D002897 ORTHO05D008718 4.0e-59 232.3 254 53.1
TWI18G1283 Tripterygium wilfordii HOM05D002897 ORTHO05D008718 4.4e-58 228.8 259 51.0
Sed0013072 Sechium edule HOM05D002897 ORTHO05D008718 5.8e-58 228.4 254 52.8
Sabra14G0118500 Salix brachista HOM05D002897 ORTHO05D008718 1.3e-57 227.3 257 54.5
MSTRG.14141 Avicennia marina HOM05D002897 ORTHO05D008718 1.7e-57 226.9 260 52.7
Ciclev10016301m.g Citrus clementina HOM05D002897 ORTHO05D008718 4.9e-57 225.3 264 50.8
Hma1.2p1_2044F.1_g312350 Hydrangea macrophylla HOM05D002897 ORTHO05D008718 1.4e-56 223.8 258 52.7
Oeu051891.2 Olea europaea HOM05D002897 ORTHO05D008718 1.9e-56 223.4 284 49.6
CSS0022002 Camellia sinensis var. sinensis HOM05D002897 ORTHO05D008718 2.4e-56 223.0 254 53.5
Atru.chr6.3235 Acer truncatum HOM05D002897 ORTHO05D008718 4.1e-56 222.2 255 50.6
MELO3C018838.2 Cucumis melo HOM05D002897 ORTHO05D008718 5.4e-56 221.9 263 50.2
THA.LOC104826141 Tarenaya hassleriana HOM05D002897 ORTHO05D008718 5.4e-56 221.9 253 53.4
arahy.Tifrunner.gnm1.ann1.QRVI7E Arachis hypogaea HOM05D002897 ORTHO05D008718 7.1e-56 221.5 265 49.4
CsaV3_7G003360 Cucumis sativus L. HOM05D002897 ORTHO05D008718 1.6e-55 220.3 263 51.0
SGA_v2.0_scaffold49G18345 Striga asiatica HOM05D002897 ORTHO05D008718 1.6e-55 220.3 260 51.5
HanXRQChr12g0373611 Helianthus annuus HOM05D002897 ORTHO05D008718 2.7e-55 219.5 255 52.2
arahy.Tifrunner.gnm1.ann1.YEZ88R Arachis hypogaea HOM05D002897 ORTHO05D008718 3.5e-55 219.2 265 49.1
AT1G05060 Arabidopsis thaliana HOM05D002897 ORTHO05D008718 1.0e-54 217.6 257 52.1
Thhalv10008572m.g Eutrema salsugineum HOM05D002897 ORTHO05D008718 1.3e-54 217.2 255 50.6
Sp1g03930 Schrenkiella parvula HOM05D002897 ORTHO05D008718 2.3e-54 216.5 254 51.2
Lsat_1_v5_gn_5_123640 Lactuca sativa HOM05D002897 ORTHO05D008718 3.0e-54 216.1 264 50.0
Sc06g0009610 Simmondsia chinensis HOM05D002897 ORTHO05D008718 3.0e-54 216.1 260 50.8
ECA234G1553 Erigeron canadensis HOM05D002897 ORTHO05D008718 3.9e-54 215.7 254 50.8
vmacro12177 Vaccinium macrocarpon HOM05D002897 ORTHO05D008718 1.1e-53 214.2 252 52.4
Aqoxy1G03476 Aquilegia oxysepala HOM05D002897 ORTHO05D008718 1.9e-53 213.4 258 51.2
BcaB07g32946 Brassica carinata HOM05D002897 ORTHO05D008718 3.3e-53 212.6 254 50.0
Glyma.14G046500 Glycine max HOM05D002897 ORTHO05D008718 3.3e-53 212.6 253 50.6
Solyc07g049200.4 Solanum lycopersicum HOM05D002897 ORTHO05D008718 3.3e-53 212.6 257 50.2
Peaxi162Scf00921g00023 Petunia axillaris HOM05D002897 ORTHO05D008718 7.3e-53 211.5 261 49.8
BraA09t38920Z Brassica rapa HOM05D002897 ORTHO05D008718 9.5e-53 211.1 255 49.4
AL1G14810 Arabidopsis lyrata HOM05D002897 ORTHO05D008718 1.6e-52 210.3 257 51.4
BolC5t31920H Brassica oleracea HOM05D002897 ORTHO05D008718 1.6e-52 210.3 257 49.4
PGSC0003DMG400000696 Solanum tuberosum HOM05D002897 ORTHO05D008718 3.6e-52 209.1 257 49.8
MD17G1102200 Malus domestica HOM05D002897 ORTHO05D008718 4.7e-52 208.8 211 60.7
BcaC05g27288 Brassica carinata HOM05D002897 ORTHO05D008718 8.1e-52 208.0 257 49.4
Carub.0001s0433 Capsella rubella HOM05D002897 ORTHO05D008718 8.1e-52 208.0 256 50.0
Sopen07g025210 Solanum pennellii HOM05D002897 ORTHO05D008718 8.1e-52 208.0 255 49.0
VMungo0647G1784 Vigna mungo HOM05D002897 ORTHO05D008718 8.1e-52 208.0 253 49.8
AUR62035641 Chenopodium quinoa HOM05D002897 ORTHO05D008718 1.1e-51 207.6 257 49.8
Rhsim06G0166000 Rhododendron simsii HOM05D002897 ORTHO05D008718 1.1e-51 207.6 266 48.9
Glyma.02G270500 Glycine max HOM05D002897 ORTHO05D008718 2.4e-51 206.5 258 48.8
Nitab4.5_0012091g0010 Nicotiana tabacum HOM05D002897 ORTHO05D008718 3.1e-51 206.1 251 50.6
Phvul.008G211400 Phaseolus vulgaris HOM05D002897 ORTHO05D008718 4.0e-51 205.7 258 49.2
Cc05_g03270 Coffea canephora HOM05D002897 ORTHO05D008718 1.2e-50 204.1 250 48.8
Lalb_Chr04g0249891 Lupinus albus HOM05D002897 ORTHO05D008718 1.2e-50 204.1 258 48.8
DCAR_012931 Daucus carota HOM05D002897 ORTHO05D008718 1.5e-50 203.8 245 50.2
TPR.G14446 Trifolium pratense HOM05D002897 ORTHO05D008718 3.4e-50 202.6 255 48.6
A09p33710 Brassica napus HOM05D002897 ORTHO05D008718 4.4e-50 202.2 279 45.5
SalBow1G3579 Salvia bowleyana HOM05D002897 ORTHO05D008718 4.4e-50 202.2 259 49.4
MBI19_g24999_MAGBIO Magnolia biondii HOM05D002897 ORTHO05D008718 5.8e-50 201.8 259 51.0
Medtr5g085980 Medicago truncatula HOM05D002897 ORTHO05D008718 5.8e-50 201.8 250 49.2
C05p31940 Brassica napus HOM05D002897 ORTHO05D008718 7.6e-50 201.4 281 45.6
SalBow1G2496 Salvia bowleyana HOM05D002897 ORTHO05D008718 7.6e-50 201.4 259 49.4
Eucgr.A01101 Eucalyptus grandis HOM05D002897 ORTHO05D008718 4.9e-49 198.7 268 46.3
Ca_06120_v3 Cicer arietinum L. HOM05D002897 ORTHO05D008718 8.4e-49 198.0 251 47.4
Nitab4.5_0000482g0070 Nicotiana tabacum HOM05D002897 ORTHO05D008718 2.4e-48 196.4 256 50.0
Lj8C128G4 Lonicera japonica HOM05D002897 ORTHO05D008718 3.2e-48 196.1 252 46.8
Psat4g114440 Pisum sativum HOM05D002897 ORTHO05D008718 3.2e-48 196.1 249 47.8
Migut.H01234 Erythranthe guttata HOM05D002897 ORTHO05D008718 9.2e-48 194.5 268 44.4
CDE07G0516 Ceratophyllum demersum HOM05D002897 ORTHO05D008718 2.1e-47 193.4 253 45.8
AUR62017163 Chenopodium quinoa HOM05D002897 ORTHO05D008718 4.6e-47 192.2 242 48.3
EL10Ac4g07512 Beta vulgaris HOM05D002897 ORTHO05D008718 1.0e-46 191.0 265 45.7
CARHR004510 Cardamine hirsuta HOM05D002897 ORTHO05D008718 1.9e-45 186.8 257 47.1
LjContig00564g0002899 Lotus japonicus HOM05D002897 ORTHO05D008718 5.6e-45 185.3 259 46.7
PSO210G2604 Papaver somniferum HOM05D002897 ORTHO05D008718 4.0e-43 179.1 263 43.7
Hma1.2p1_1986F.1_g310090 Hydrangea macrophylla HOM05D002897 ORTHO05D008718 5.2e-43 178.7 214 49.5
Zm00001eb280010 Zea mays HOM05D002897 ORTHO05D008718 9.9e-42 174.5 253 42.3
Os06g0239700 Oryza sativa ssp. japonica HOM05D002897 ORTHO05D008718 2.2e-41 173.3 258 41.9
Aqoxy1G03469 Aquilegia oxysepala HOM05D002897 ORTHO05D008718 1.0e-38 164.5 260 43.5
Aa31LG1G19710 Aethionema arabicum HOM05D002897 ORTHO05D008718 1.1e-35 154.5 301 37.2
HPP92_017354 Vanilla planifolia HOM05D002897 ORTHO05D008718 9.0e-35 151.4 252 41.7
SEGI_41028 Sequoiadendron giganteum HOM05D002897 ORTHO05D008718 7.9e-31 138.3 259 37.1
Hma1.2p1_2044F.1_g312360 Hydrangea macrophylla HOM05D002897 ORTHO05D008718 4.3e-29 132.5 193 48.2
unitig_21.g21003 Utricularia gibba HOM05D002897 ORTHO05D008718 1.1e-27 127.9 117 54.7
CSS0034853 Camellia sinensis var. sinensis HOM05D002897 ORTHO05D008718 3.1e-27 126.3 141 51.1
COL.COLO4_21853 Corchorus olitorius HOM05D002897 ORTHO05D008718 3.9e-22 109.4 154 50.0
Pp3c23_20260 Physcomitrium patens HOM05D002897 ORTHO05D008718 1.5e-21 107.5 247 35.6
AagrBONN_evm.TU.Sc2ySwM_117.2821 Anthoceros agrestis HOM05D002897 ORTHO05D008718 9.6e-21 104.8 239 36.0
ATR0059G040 Amborella trichopoda HOM05D002897 ORTHO05D008718 2.7e-15 86.7 92 41.3
CANSAT64G1786 Cannabis sativa HOM05D002897 ORTHO05D008718 7.9e-15 85.1 64 57.8
MD06G1049400 Malus domestica HOM05D002897 ORTHO05D008718 9.7e-13 78.2 66 72.7
SMO290G0011 Selaginella moellendorffii HOM05D013342 ORTHO05D008718 2.2e-12 77.0 222 31.5
SMO356G0703 Selaginella moellendorffii HOM05D013342 ORTHO05D008718 6.3e-12 75.5 222 31.5
ATR0059G011 Amborella trichopoda HOM05D002897 ORTHO05D008718 1.8e-11 73.9 143 43.4
Aa31sc72G10 Aethionema arabicum HOM05D002897 ORTHO05D008718 1.0e-06 58.2 106 36.8


User provided reference genes

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