Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN14G2544 Fragaria x ananassa HOM05D004326 ORTHO05D004570 8.6e-52 206.8 114 100.0
FAN14G3188 Fragaria x ananassa HOM05D004326 ORTHO05D004570 8.6e-52 206.8 114 100.0
RcHm_v2.0_Chr2g0163211 Rosa chinensis HOM05D004326 ORTHO05D004570 4.6e-21 104.8 83 66.3
FvH4_6g45391 Fragaria vesca HOM05D004326 ORTHO05D004570 1.3e-20 103.2 62 100.0
Gohir.A07G168701 Gossypium hirsutum HOM05D004326 ORTHO05D004570 2.5e-11 72.4 36 91.7
Gohir.D07G179500 Gossypium hirsutum HOM05D004326 ORTHO05D004570 2.5e-11 72.4 36 91.7
Gorai.001G200500 Gossypium raimondii HOM05D004326 ORTHO05D004570 2.5e-11 72.4 36 91.7
Potri.004G102950 Populus trichocarpa HOM05D004326 ORTHO05D004570 1.3e-10 70.1 36 86.1
Prupe.3G240100 Prunus persica HOM05D004326 ORTHO05D004570 1.3e-10 70.1 35 88.6
CiPaw.03G059200 Carya illinoinensis HOM05D004326 ORTHO05D004570 1.6e-10 69.7 36 86.1
Potri.017G112100 Populus trichocarpa HOM05D004326 ORTHO05D004570 1.6e-10 69.7 36 83.3
PGR042G3431 Punica granatum HOM05D004326 ORTHO05D004570 1.6e-10 69.7 35 88.6
Duzib138G0964 Durio zibethinus HOM05D004326 ORTHO05D004570 2.1e-10 69.3 36 83.3
Glyma.08G256500 Glycine max HOM05D004326 ORTHO05D004570 2.8e-10 68.9 36 83.3
Phvul.008G020301 Phaseolus vulgaris HOM05D004326 ORTHO05D004570 2.8e-10 68.9 36 83.3
Thecc.04G138400 Theobroma cacao HOM05D004326 ORTHO05D004570 2.8e-10 68.9 36 80.6
TWI56G0546 Tripterygium wilfordii HOM05D004326 ORTHO05D004570 4.8e-10 68.2 36 83.3
CANSAT64G0444 Cannabis sativa HOM05D004326 ORTHO05D004570 1.8e-09 66.2 36 83.3
MD09G1083800 Malus domestica HOM05D004326 ORTHO05D004570 1.8e-09 66.2 36 75.0
Lalb_Chr17g0336511 Lupinus albus HOM05D004326 ORTHO05D004570 2.4e-09 65.9 36 77.8
THA.LOC109117071 Tarenaya hassleriana HOM05D004326 ORTHO05D004570 2.4e-09 65.9 36 77.8
Manes.01G107900 Manihot esculenta HOM05D004326 ORTHO05D004570 3.1e-09 65.5 32 87.5
Manes.02G066501 Manihot esculenta HOM05D004326 ORTHO05D004570 3.1e-09 65.5 36 75.0
TWI12G0968 Tripterygium wilfordii HOM05D004326 ORTHO05D004570 3.1e-09 65.5 36 77.8
Carub.0002s1354 Capsella rubella HOM05D004326 ORTHO05D004570 6.9e-09 64.3 31 87.1
CAN.G93.32 Capsicum annuum HOM05D004326 ORTHO05D004570 9.0e-09 63.9 36 75.0
Migut.H00527 Erythranthe guttata HOM05D004326 ORTHO05D004570 9.0e-09 63.9 34 79.4
Glyma.18G280800 Glycine max HOM05D004326 ORTHO05D004570 1.2e-08 63.5 116 39.7
AT1G67265 Arabidopsis thaliana HOM05D004326 ORTHO05D004570 1.5e-08 63.2 31 83.9
Solyc02g065570.1 Solanum lycopersicum HOM05D004326 ORTHO05D004570 2.0e-08 62.8 36 72.2
C06p43000 Brassica napus HOM05D004326 ORTHO05D004570 3.4e-08 62.0 31 87.1
BolC6t39135H Brassica oleracea HOM05D004326 ORTHO05D004570 3.4e-08 62.0 31 87.1
BraA07t31013Z Brassica rapa HOM05D004326 ORTHO05D004570 3.4e-08 62.0 31 87.1
Migut.K00857 Erythranthe guttata HOM05D004326 ORTHO05D004570 4.5e-08 61.6 36 69.4
THA.LOC104805244 Tarenaya hassleriana HOM05D004326 ORTHO05D004570 5.8e-08 61.2 36 75.0
THA.LOC104825713 Tarenaya hassleriana HOM05D004326 ORTHO05D004570 5.8e-08 61.2 36 75.0
Thecc.02G361000 Theobroma cacao HOM05D004326 ORTHO05D004570 5.8e-08 61.2 36 75.0
CANSAT64G1998 Cannabis sativa HOM05D004326 ORTHO05D004570 7.6e-08 60.8 36 75.0
Glyma.02G099000 Glycine max HOM05D004326 ORTHO05D004570 7.6e-08 60.8 35 77.1
Glyma.20G185900 Glycine max HOM05D004326 ORTHO05D004570 7.6e-08 60.8 36 75.0
Phvul.007G102250 Phaseolus vulgaris HOM05D004326 ORTHO05D004570 7.6e-08 60.8 36 75.0
THA.LOC109116378 Tarenaya hassleriana HOM05D004326 ORTHO05D004570 7.6e-08 60.8 34 79.4
ClCG05G012040 Citrullus lanatus HOM05D004326 ORTHO05D004570 9.9e-08 60.5 32 81.2
Migut.K01265 Erythranthe guttata HOM05D004326 ORTHO05D004570 9.9e-08 60.5 36 75.0
Eucgr.G02348 Eucalyptus grandis HOM05D004326 ORTHO05D004570 9.9e-08 60.5 66 48.5
Thhalv10015386m.g Eutrema salsugineum HOM05D004326 ORTHO05D004570 9.9e-08 60.5 31 80.6
THA.LOC109116985 Tarenaya hassleriana HOM05D004326 ORTHO05D004570 9.9e-08 60.5 34 79.4
A10p23030 Brassica napus HOM05D004326 ORTHO05D004570 1.3e-07 60.1 31 80.6
BolC9t58947H Brassica oleracea HOM05D004326 ORTHO05D004570 1.3e-07 60.1 31 80.6
BraA10t44372Z Brassica rapa HOM05D004326 ORTHO05D004570 1.3e-07 60.1 31 80.6
Gohir.D12G173600 Gossypium hirsutum HOM05D004326 ORTHO05D004570 1.3e-07 60.1 36 72.2
Gorai.008G186200 Gossypium raimondii HOM05D004326 ORTHO05D004570 1.3e-07 60.1 36 72.2
Oeu058414.1 Olea europaea HOM05D004326 ORTHO05D004570 1.3e-07 60.1 61 47.5
Carub.0006s1421 Capsella rubella HOM05D004326 ORTHO05D004570 1.7e-07 59.7 31 77.4
CAN.G184.91 Capsicum annuum HOM05D004326 ORTHO05D004570 1.7e-07 59.7 36 69.4
Gohir.A12G170400 Gossypium hirsutum HOM05D004326 ORTHO05D004570 1.7e-07 59.7 36 69.4
MD16G1048200 Malus domestica HOM05D004326 ORTHO05D004570 1.7e-07 59.7 35 77.1
PGR119G2456 Punica granatum HOM05D004326 ORTHO05D004570 1.7e-07 59.7 36 72.2
TWI79G1601 Tripterygium wilfordii HOM05D004326 ORTHO05D004570 1.7e-07 59.7 32 84.4
Atru.chr11.1355 Acer truncatum HOM05D004326 ORTHO05D004570 2.2e-07 59.3 36 69.4
CAN.G497.3 Capsicum annuum HOM05D004326 ORTHO05D004570 2.2e-07 59.3 36 66.7
Glyma.10G204600 Glycine max HOM05D004326 ORTHO05D004570 2.2e-07 59.3 36 72.2
Manes.14G097600 Manihot esculenta HOM05D004326 ORTHO05D004570 2.2e-07 59.3 36 72.2
PSO063G2411 Papaver somniferum HOM05D004326 ORTHO05D004570 2.2e-07 59.3 31 83.9
PSO782G5714 Papaver somniferum HOM05D004326 ORTHO05D004570 2.2e-07 59.3 31 83.9
C03p08740 Brassica napus HOM05D004326 ORTHO05D004570 2.9e-07 58.9 30 80.0
BolC3t13372H Brassica oleracea HOM05D004326 ORTHO05D004570 2.9e-07 58.9 30 80.0
CiPaw.15G003600 Carya illinoinensis HOM05D004326 ORTHO05D004570 2.9e-07 58.9 36 69.4
Duzib251G0285 Durio zibethinus HOM05D004326 ORTHO05D004570 2.9e-07 58.9 36 69.4
Migut.L01097 Erythranthe guttata HOM05D004326 ORTHO05D004570 2.9e-07 58.9 35 77.1
Gohir.D13G069701 Gossypium hirsutum HOM05D004326 ORTHO05D004570 2.9e-07 58.9 36 69.4
TWI31G0110 Tripterygium wilfordii HOM05D004326 ORTHO05D004570 2.9e-07 58.9 36 75.0
Duzib268G0802 Durio zibethinus HOM05D004326 ORTHO05D004570 3.8e-07 58.5 36 69.4
Gohir.A13G053100 Gossypium hirsutum HOM05D004326 ORTHO05D004570 3.8e-07 58.5 36 69.4
Lalb_Chr06g0170221 Lupinus albus HOM05D004326 ORTHO05D004570 3.8e-07 58.5 36 66.7
Prupe.1G305400 Prunus persica HOM05D004326 ORTHO05D004570 3.8e-07 58.5 32 81.2
MD13G1046500 Malus domestica HOM05D004326 ORTHO05D004570 4.9e-07 58.2 35 74.3
Glyma.01G088000 Glycine max HOM05D004326 ORTHO05D004570 6.4e-07 57.8 32 78.1
Glyma.02G100100 Glycine max HOM05D004326 ORTHO05D004570 6.4e-07 57.8 32 78.1
Potri.008G116700 Populus trichocarpa HOM05D004326 ORTHO05D004570 6.4e-07 57.8 36 66.7
THA.LOC109117262 Tarenaya hassleriana HOM05D004326 ORTHO05D004570 6.4e-07 57.8 31 77.4
AL2G27790 Arabidopsis lyrata HOM05D004326 ORTHO05D004570 8.4e-07 57.4 36 69.4
AT1G68825 Arabidopsis thaliana HOM05D004326 ORTHO05D004570 8.4e-07 57.4 36 69.4
C06p37300 Brassica napus HOM05D004326 ORTHO05D004570 8.4e-07 57.4 36 69.4
Carub.0002s1541 Capsella rubella HOM05D004326 ORTHO05D004570 8.4e-07 57.4 36 69.4
Potri.010G129600 Populus trichocarpa HOM05D004326 ORTHO05D004570 8.4e-07 57.4 36 66.7
A03p07530 Brassica napus HOM05D004326 ORTHO05D004570 1.1e-06 57.0 30 76.7
BraA03t10081Z Brassica rapa HOM05D004326 ORTHO05D004570 1.1e-06 57.0 30 76.7
Lalb_Chr02g0151761 Lupinus albus HOM05D004326 ORTHO05D004570 1.1e-06 57.0 35 62.9
Manes.06G072200 Manihot esculenta HOM05D004326 ORTHO05D004570 1.1e-06 57.0 36 66.7
PSO478G3685 Papaver somniferum HOM05D004326 ORTHO05D004570 1.1e-06 57.0 31 80.6
AL1G24940 Arabidopsis lyrata HOM05D004326 ORTHO05D004570 1.4e-06 56.6 36 66.7
AT1G13245 Arabidopsis thaliana HOM05D004326 ORTHO05D004570 1.4e-06 56.6 36 66.7
Carub.0001s1297 Capsella rubella HOM05D004326 ORTHO05D004570 1.4e-06 56.6 36 66.7
PGR102G0365 Punica granatum HOM05D004326 ORTHO05D004570 1.4e-06 56.6 32 78.1
Sed0007261 Sechium edule HOM05D004326 ORTHO05D004570 1.4e-06 56.6 39 66.7
THA.LOC109116167 Tarenaya hassleriana HOM05D004326 ORTHO05D004570 1.4e-06 56.6 36 66.7
BolC2t06734H Brassica oleracea HOM05D004326 ORTHO05D004570 1.9e-06 56.2 31 80.6
AT3G02493 Arabidopsis thaliana HOM05D004326 ORTHO05D004570 2.4e-06 55.8 34 73.5
Glyma.10G129200 Glycine max HOM05D004326 ORTHO05D004570 2.4e-06 55.8 36 72.2
Lalb_Chr10g0099751 Lupinus albus HOM05D004326 ORTHO05D004570 2.4e-06 55.8 50 54.0
CARHR013620 Cardamine hirsuta HOM05D004326 ORTHO05D004570 3.2e-06 55.5 36 63.9
MELO3C008521.2 Cucumis melo HOM05D004326 ORTHO05D004570 3.2e-06 55.5 31 77.4
PSO017G5195 Papaver somniferum HOM05D004326 ORTHO05D004570 3.2e-06 55.5 30 76.7
AL6G26900 Arabidopsis lyrata HOM05D004326 ORTHO05D004570 4.2e-06 55.1 31 77.4
A06p08510 Brassica napus HOM05D004326 ORTHO05D004570 4.2e-06 55.1 36 66.7
A08p32390 Brassica napus HOM05D004326 ORTHO05D004570 4.2e-06 55.1 36 66.7
C02p08120 Brassica napus HOM05D004326 ORTHO05D004570 4.2e-06 55.1 31 77.4
C05p10110 Brassica napus HOM05D004326 ORTHO05D004570 4.2e-06 55.1 36 66.7
BolC5t29757H Brassica oleracea HOM05D004326 ORTHO05D004570 4.2e-06 55.1 36 66.7
BraA06t24046Z Brassica rapa HOM05D004326 ORTHO05D004570 4.2e-06 55.1 36 66.7
BraA08t35162Z Brassica rapa HOM05D004326 ORTHO05D004570 4.2e-06 55.1 36 66.7
CARHR197290 Cardamine hirsuta HOM05D004326 ORTHO05D004570 4.2e-06 55.1 31 77.4
Lalb_Chr17g0341881 Lupinus albus HOM05D004326 ORTHO05D004570 4.2e-06 55.1 36 63.9
Gohir.A09G046900 Gossypium hirsutum HOM05D004326 ORTHO05D004570 5.5e-06 54.7 27 74.1
Gohir.D09G047400 Gossypium hirsutum HOM05D004326 ORTHO05D004570 5.5e-06 54.7 27 74.1
Gorai.006G062700 Gossypium raimondii HOM05D004326 ORTHO05D004570 5.5e-06 54.7 27 74.1
PSO063G2252 Papaver somniferum HOM05D004326 ORTHO05D004570 5.5e-06 54.7 31 80.6
AT3G25717 Arabidopsis thaliana HOM05D004326 ORTHO05D004570 7.1e-06 54.3 32 75.0
A06p42560 Brassica napus HOM05D004326 ORTHO05D004570 7.1e-06 54.3 32 75.0
A09p24960 Brassica napus HOM05D004326 ORTHO05D004570 7.1e-06 54.3 32 75.0
BolC8t49226H Brassica oleracea HOM05D004326 ORTHO05D004570 7.1e-06 54.3 36 66.7
BraA06t27171Z Brassica rapa HOM05D004326 ORTHO05D004570 7.1e-06 54.3 32 75.0
BraA09t38084Z Brassica rapa HOM05D004326 ORTHO05D004570 7.1e-06 54.3 32 75.0
Carub.0005s0354 Capsella rubella HOM05D004326 ORTHO05D004570 7.1e-06 54.3 32 75.0
Duzib084G0446 Durio zibethinus HOM05D004326 ORTHO05D004570 7.1e-06 54.3 26 80.8
PGSC0003DMG400007475 Solanum tuberosum HOM05D004326 ORTHO05D004570 7.1e-06 54.3 33 72.7
AT5G16023 Arabidopsis thaliana HOM05D004326 ORTHO05D004570 9.3e-06 53.9 31 74.2


User provided reference genes

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