Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN14G2531 Fragaria x ananassa HOM05D006420 ORTHO05D008009 5.2e-148 527.7 269 100.0
FvH4_6g06020 Fragaria vesca HOM05D006420 ORTHO05D008009 4.7e-133 478.0 269 91.8
FAN09G3808 Fragaria x ananassa HOM05D006420 ORTHO05D008009 1.3e-130 469.9 271 89.3
FAN02G2504 Fragaria x ananassa HOM05D006420 ORTHO05D008009 9.5e-126 453.8 233 97.0
RcHm_v2.0_Chr3g0454981 Rosa chinensis HOM05D006420 ORTHO05D008009 1.6e-125 453.0 281 83.3
FAN05G3282 Fragaria x ananassa HOM05D006420 ORTHO05D008009 3.6e-125 451.8 270 86.7
FAN05G1000 Fragaria x ananassa HOM05D006420 ORTHO05D008009 4.9e-122 441.4 288 81.6
Prupe.6G324800 Prunus persica HOM05D006420 ORTHO05D008009 8.9e-108 394.0 270 74.8
MD12G1218500 Malus domestica HOM05D006420 ORTHO05D008009 8.4e-106 387.5 269 75.8
MD04G1204800 Malus domestica HOM05D006420 ORTHO05D008009 2.7e-104 382.5 270 74.8
CANSAT54G1557 Cannabis sativa HOM05D006420 ORTHO05D008009 2.5e-94 349.4 267 68.9
Manes.08G120400 Manihot esculenta HOM05D006420 ORTHO05D008009 6.2e-93 344.7 274 65.3
PGR083G0891 Punica granatum HOM05D006420 ORTHO05D008009 1.4e-92 343.6 273 64.5
GSVIVG01000081001 Vitis vinifera HOM05D006420 ORTHO05D008009 5.3e-92 341.7 276 63.0
COL.COLO4_13456 Corchorus olitorius HOM05D006420 ORTHO05D008009 2.0e-91 339.7 269 63.2
EL10Ac4g09358 Beta vulgaris HOM05D006420 ORTHO05D008009 3.4e-91 339.0 264 64.8
Sed0005627 Sechium edule HOM05D006420 ORTHO05D008009 5.8e-91 338.2 270 65.6
Hund21694 Selenicereus undatus HOM05D006420 ORTHO05D008009 5.8e-91 338.2 274 64.6
AUR62000819 Chenopodium quinoa HOM05D006420 ORTHO05D008009 9.9e-91 337.4 269 62.5
Thecc.05G302400 Theobroma cacao HOM05D006420 ORTHO05D008009 1.7e-90 336.7 242 70.7
Lj9A86G16 Lonicera japonica HOM05D006420 ORTHO05D008009 2.9e-90 335.9 271 63.5
Actinidia05697 Actinidia chinensis HOM05D006420 ORTHO05D008009 3.8e-90 335.5 275 61.1
TAR636G1821 Trochodendron aralioides HOM05D006420 ORTHO05D008009 3.8e-90 335.5 290 60.3
THA.LOC104820863 Tarenaya hassleriana HOM05D006420 ORTHO05D008009 1.1e-89 334.0 269 63.2
AUR62005152 Chenopodium quinoa HOM05D006420 ORTHO05D008009 1.4e-89 333.6 280 61.4
Lj9A85G78 Lonicera japonica HOM05D006420 ORTHO05D008009 1.9e-89 333.2 271 63.1
Hma1.2p1_0928F.1_g237740 Hydrangea macrophylla HOM05D006420 ORTHO05D008009 3.2e-89 332.4 273 61.2
Cpa.g.sc48.61 Carica papaya HOM05D006420 ORTHO05D008009 9.3e-89 330.9 270 63.3
BcaC06g31763 Brassica carinata HOM05D006420 ORTHO05D008009 2.1e-88 329.7 268 64.2
Dinv23938 Davidia involucrata HOM05D006420 ORTHO05D008009 2.1e-88 329.7 282 60.3
Aa31LG2G11700 Aethionema arabicum HOM05D006774 ORTHO05D008411 2.7e-88 329.3 263 61.6
Ciclev10002177m.g Citrus clementina HOM05D006420 ORTHO05D008009 2.7e-88 329.3 275 62.5
Gohir.D08G227700 Gossypium hirsutum HOM05D006420 ORTHO05D008009 2.7e-88 329.3 273 63.7
Gorai.004G241900 Gossypium raimondii HOM05D006420 ORTHO05D008009 2.7e-88 329.3 273 63.7
CSS0034260 Camellia sinensis var. sinensis HOM05D006420 ORTHO05D008009 3.5e-88 328.9 269 62.5
Gohir.A08G210900 Gossypium hirsutum HOM05D006420 ORTHO05D008009 3.5e-88 328.9 273 63.4
Duzib177G0348 Durio zibethinus HOM05D006420 ORTHO05D008009 6.0e-88 328.2 272 63.2
CSS0037657 Camellia sinensis var. sinensis HOM05D006420 ORTHO05D008009 2.3e-87 326.2 269 62.1
CsaV3_2G005340 Cucumis sativus L. HOM05D006420 ORTHO05D008009 2.3e-87 326.2 275 61.8
BcaC02g10755 Brassica carinata HOM05D006420 ORTHO05D008009 3.0e-87 325.9 272 62.9
C04p25420 Brassica napus HOM05D006420 ORTHO05D008009 3.0e-87 325.9 272 62.9
BolC4t24060H Brassica oleracea HOM05D006420 ORTHO05D008009 3.0e-87 325.9 272 62.9
A03p68650 Brassica napus HOM05D006420 ORTHO05D008009 1.1e-86 323.9 242 66.5
BraSC39t46193Z Brassica rapa HOM05D006420 ORTHO05D008009 1.1e-86 323.9 242 66.5
Thhalv10023646m.g Eutrema salsugineum HOM05D006420 ORTHO05D008009 1.1e-86 323.9 267 62.2
ClCG02G015760 Citrullus lanatus HOM05D006420 ORTHO05D008009 1.5e-86 323.6 275 61.5
CiPaw.07G020700 Carya illinoinensis HOM05D006420 ORTHO05D008009 2.5e-86 322.8 226 68.1
Cfa006594 Carpinus fangiana HOM05D006420 ORTHO05D008009 5.6e-86 321.6 233 69.5
Psat6g150480 Pisum sativum HOM05D006420 ORTHO05D008009 7.4e-86 321.2 265 63.4
TAR365G0270 Trochodendron aralioides HOM05D006420 ORTHO05D008009 9.6e-86 320.9 287 59.2
MSTRG.5100 Avicennia marina HOM05D006420 ORTHO05D008009 1.3e-85 320.5 279 58.4
Nn4g26277 Nelumbo nucifera HOM05D006420 ORTHO05D008009 2.1e-85 319.7 241 65.6
Ah.04g160290 Amaranthus hybridus HOM05D006420 ORTHO05D008009 3.7e-85 318.9 258 64.3
Sopen01g042690 Solanum pennellii HOM05D006420 ORTHO05D008009 4.8e-85 318.5 283 58.7
Nn1g02269 Nelumbo nucifera HOM05D006420 ORTHO05D008009 6.2e-85 318.2 292 58.9
Solyc01g099130.3 Solanum lycopersicum HOM05D006420 ORTHO05D008009 6.2e-85 318.2 283 58.7
RhsimUnG0226900 Rhododendron simsii HOM05D006420 ORTHO05D008009 8.1e-85 317.8 265 60.4
Ca_10114_v3 Cicer arietinum L. HOM05D006420 ORTHO05D008009 1.8e-84 316.6 232 67.7
Duzib106G1877 Durio zibethinus HOM05D006420 ORTHO05D008009 6.9e-84 314.7 233 67.8
PSO210G7816 Papaver somniferum HOM05D006420 ORTHO05D008009 6.9e-84 314.7 270 59.3
Atru.chr2.393 Acer truncatum HOM05D006420 ORTHO05D008009 1.2e-83 313.9 272 58.5
Nitab4.5_0000137g0140 Nicotiana tabacum HOM05D006420 ORTHO05D008009 1.2e-83 313.9 280 58.9
Cc02_g33350 Coffea canephora HOM05D006420 ORTHO05D008009 1.5e-83 313.5 246 63.8
Lalb_Chr21g0310681 Lupinus albus HOM05D006420 ORTHO05D008009 1.5e-83 313.5 267 61.8
PGSC0003DMG400024687 Solanum tuberosum HOM05D006420 ORTHO05D008009 1.5e-83 313.5 280 58.9
Cfa006595 Carpinus fangiana HOM05D006420 ORTHO05D008009 2.6e-83 312.8 233 66.5
Peaxi162Scf00037g00513 Petunia axillaris HOM05D006420 ORTHO05D008009 3.4e-83 312.4 231 66.2
Aqoxy5G00493 Aquilegia oxysepala HOM05D006420 ORTHO05D008009 7.6e-83 311.2 278 57.9
Glyma.10G154000 Glycine max HOM05D006420 ORTHO05D008009 1.3e-82 310.5 266 59.8
CARHR287540 Cardamine hirsuta HOM05D006420 ORTHO05D008009 2.2e-82 309.7 222 69.4
Medtr1g082950 Medicago truncatula HOM05D006420 ORTHO05D008009 2.2e-82 309.7 231 67.1
Migut.N01987 Erythranthe guttata HOM05D006420 ORTHO05D008009 3.8e-82 308.9 249 63.1
Migut.N02012 Erythranthe guttata HOM05D006420 ORTHO05D008009 3.8e-82 308.9 249 63.1
Glyma.20G234300 Glycine max HOM05D006420 ORTHO05D008009 6.5e-82 308.1 263 60.8
Sc06g0003280 Simmondsia chinensis HOM05D006420 ORTHO05D008009 6.5e-82 308.1 233 65.2
CAN.G1034.41 Capsicum annuum HOM05D006420 ORTHO05D008009 8.4e-82 307.8 262 60.3
vmacro05011 Vaccinium macrocarpon HOM05D006420 ORTHO05D008009 1.4e-81 307.0 233 63.5
Lsat_1_v5_gn_9_123421 Lactuca sativa HOM05D006420 ORTHO05D008009 2.5e-81 306.2 271 57.2
Phvul.007G179700 Phaseolus vulgaris HOM05D006420 ORTHO05D008009 3.2e-81 305.8 269 56.9
Carub.0002s0818 Capsella rubella HOM05D006420 ORTHO05D008009 7.1e-81 304.7 222 67.6
SpUn0004_0090 Schrenkiella parvula HOM05D006420 ORTHO05D008009 9.3e-81 304.3 222 67.1
TPR.G6113 Trifolium pratense HOM05D006420 ORTHO05D008009 1.6e-80 303.5 231 66.2
arahy.Tifrunner.gnm1.ann1.7ESY4D Arachis hypogaea HOM05D006420 ORTHO05D008009 2.1e-80 303.1 232 65.1
Oeu010909.1 Olea europaea HOM05D006420 ORTHO05D008009 2.1e-80 303.1 271 59.8
arahy.Tifrunner.gnm1.ann1.GHU2GX Arachis hypogaea HOM05D006420 ORTHO05D008009 2.7e-80 302.8 232 64.7
TWI56G0424 Tripterygium wilfordii HOM05D006420 ORTHO05D008009 1.0e-79 300.8 279 58.1
AT1G55000 Arabidopsis thaliana HOM05D006420 ORTHO05D008009 2.3e-79 299.7 220 66.4
DCAR_029409 Daucus carota HOM05D006420 ORTHO05D008009 5.1e-79 298.5 233 63.5
Lj5g0015213 Lotus japonicus HOM05D006420 ORTHO05D008009 5.1e-79 298.5 232 63.4
AL1G65580 Arabidopsis lyrata HOM05D006420 ORTHO05D008009 8.7e-79 297.7 220 66.4
VMungo0720G1765 Vigna mungo HOM05D006420 ORTHO05D008009 7.4e-78 294.7 264 57.2
QL03p007116 Quercus lobata HOM05D006420 ORTHO05D008009 8.2e-77 291.2 277 59.2
Potri.013G021600 Populus trichocarpa HOM05D006420 ORTHO05D008009 2.2e-74 283.1 245 60.8
HPP92_020377 Vanilla planifolia HOM05D006420 ORTHO05D008009 5.0e-74 282.0 267 55.1
Sabra13G0024000 Salix brachista HOM05D006420 ORTHO05D008009 6.5e-74 281.6 249 58.6
ATR0332G062 Amborella trichopoda HOM05D006420 ORTHO05D008009 7.2e-73 278.1 277 53.1
Haze_04190 Corylus avellana HOM05D006420 ORTHO05D008009 3.6e-72 275.8 332 47.9
HanXRQChr16g0524621 Helianthus annuus HOM05D006420 ORTHO05D008009 5.1e-71 271.9 220 60.5
MELO3C004253.2 Cucumis melo HOM05D000208 ORTHO05D000130 2.8e-69 266.2 199 67.3
ECA232G4325 Erigeron canadensis HOM05D006420 ORTHO05D008009 1.1e-68 264.2 230 57.4
Zm00001eb054020 Zea mays HOM05D006420 ORTHO05D008009 1.5e-67 260.4 219 56.6
Nitab4.5_0005541g0070 Nicotiana tabacum HOM05D006420 ORTHO05D008009 2.6e-67 259.6 280 52.9
MBI04_g29616_MAGBIO Magnolia biondii HOM05D006420 ORTHO05D008009 5.9e-67 258.5 194 64.4
SGA_v2.0_scaffold81G26063 Striga asiatica HOM05D006420 ORTHO05D000105 5.9e-67 258.5 477 36.7
Os03g0699600 Oryza sativa ssp. japonica HOM05D006420 ORTHO05D008009 2.3e-63 246.5 215 53.5
Pp3c16_5370 Physcomitrium patens HOM05D006420 ORTHO05D008009 2.1e-56 223.4 216 51.4
AagrBONN_evm.TU.Sc2ySwM_368.542 Anthoceros agrestis HOM05D006420 ORTHO05D008009 3.3e-54 216.1 223 48.4
MD10G1167700 Malus domestica HOM05D006420 ORTHO05D008009 7.0e-52 208.4 117 85.5
Potri.005G032100 Populus trichocarpa HOM05D006420 ORTHO05D008009 1.2e-48 197.6 162 60.5
SMO356G0643 Selaginella moellendorffii HOM05D006420 ORTHO05D008009 8.0e-48 194.9 221 44.8
CDE02G2742 Ceratophyllum demersum HOM05D006420 ORTHO05D008009 5.7e-46 188.7 163 57.1
Eucgr.B01949 Eucalyptus grandis HOM05D006420 ORTHO05D008009 3.1e-44 183.0 109 78.0
Eucgr.B01859 Eucalyptus grandis HOM05D006420 ORTHO05D008009 2.0e-43 180.3 107 77.6
Eucgr.B01946 Eucalyptus grandis HOM05D006420 ORTHO05D008009 5.5e-41 172.2 149 61.7
Rhsim07G0185100 Rhododendron simsii HOM05D006420 ORTHO05D008009 6.1e-40 168.7 134 61.9
vmacro23281 Vaccinium macrocarpon HOM05D006420 ORTHO05D008009 2.5e-33 146.7 99 67.7
Sabra05G0034600 Salix brachista HOM05D006420 ORTHO05D008009 1.8e-28 130.6 158 46.2
Cre16.g667100 Chlamydomonas reinhardtii HOM05D006420 ORTHO05D008009 2.9e-26 123.2 232 34.1
QL03p007970 Quercus lobata HOM05D006420 ORTHO05D008009 3.8e-26 122.9 124 54.0
QL03p007144 Quercus lobata HOM05D006420 ORTHO05D008009 3.3e-25 119.8 125 54.4
QL03p007977 Quercus lobata HOM05D006420 ORTHO05D008009 4.3e-17 92.8 88 53.4
SEGI_28170 Sequoiadendron giganteum HOM05D006420 ORTHO05D008009 7.3e-17 92.0 92 51.1
QL03p007137 Quercus lobata HOM05D006420 ORTHO05D008009 6.2e-16 89.0 67 65.7
Thhalv10024156m.g Eutrema salsugineum HOM05D006420 ORTHO05D008009 6.0e-11 72.4 77 48.1
vmacro23282 Vaccinium macrocarpon HOM05D006420 ORTHO05D008009 2.3e-10 70.5 113 41.6
SalBow5G0658 Salvia bowleyana HOM05D041286 ORTHO05D008009 1.2e-06 58.2 47 57.4
Aa31LG3G18340 Aethionema arabicum HOM05D002624 ORTHO05D002796 7.5e-06 55.5 78 37.2
GSVIVG01012047001 Vitis vinifera HOM05D002624 ORTHO05D002796 7.5e-06 55.5 87 31.0


User provided reference genes

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