Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN14G2502 Fragaria x ananassa HOM05D006125 ORTHO05D007404 6.1e-31 137.1 83 100.0
FvH4_6g28500 Fragaria vesca HOM05D006125 ORTHO05D007404 5.1e-30 134.0 81 100.0
FAN05G4250 Fragaria x ananassa HOM05D006125 ORTHO05D007404 1.7e-28 129.0 79 98.7
FAN02G1155 Fragaria x ananassa HOM05D006125 ORTHO05D007404 7.0e-27 123.6 79 96.2
RcHm_v2.0_Chr2g0132751 Rosa chinensis HOM05D006125 ORTHO05D007404 1.3e-25 119.4 78 78.2
Prupe.3G100100 Prunus persica HOM05D006125 ORTHO05D007404 9.7e-21 103.2 72 72.2
Ciclev10026865m.g Citrus clementina HOM05D006125 ORTHO05D007404 2.8e-20 101.7 79 63.3
MD17G1224400 Malus domestica HOM05D006125 ORTHO05D007404 1.8e-19 99.0 71 66.2
Prupe.2G074900 Prunus persica HOM05D006125 ORTHO05D007404 1.8e-19 99.0 80 57.5
MD09G1225600 Malus domestica HOM05D006125 ORTHO05D007404 3.1e-19 98.2 71 64.8
Actinidia25476 Actinidia chinensis HOM05D006125 ORTHO05D007404 4.1e-19 97.8 80 60.0
Glyma.08G219900 Glycine max HOM05D006125 ORTHO05D007404 1.2e-18 96.3 75 58.7
CANSAT56G2558 Cannabis sativa HOM05D006125 ORTHO05D007404 1.6e-18 95.9 82 59.8
Os12g0556400 Oryza sativa ssp. japonica HOM05D006125 ORTHO05D007404 1.6e-18 95.9 71 62.0
Zm00001eb176360 Zea mays HOM05D006125 ORTHO05D007404 2.0e-18 95.5 71 62.0
Lalb_Chr04g0264571 Lupinus albus HOM05D006125 ORTHO05D007404 3.5e-18 94.7 72 61.1
Atru.chr1.2788 Acer truncatum HOM05D006125 ORTHO05D007404 5.9e-18 94.0 71 59.2
Actinidia18251 Actinidia chinensis HOM05D006125 ORTHO05D007404 7.7e-18 93.6 81 58.0
CSS0032300 Camellia sinensis var. sinensis HOM05D006125 ORTHO05D007404 7.7e-18 93.6 66 66.7
Glyma.07G021900 Glycine max HOM05D006125 ORTHO05D007404 2.9e-17 91.7 80 53.8
Nitab4.5_0002700g0200 Nicotiana tabacum HOM05D006125 ORTHO05D007404 3.8e-17 91.3 84 56.0
QL07p030560 Quercus lobata HOM05D006125 ORTHO05D007404 3.8e-17 91.3 79 51.9
Lj3g0014233 Lotus japonicus HOM05D006125 ORTHO05D007404 5.0e-17 90.9 79 55.7
AL2G40490 Arabidopsis lyrata HOM05D006125 ORTHO05D007404 6.5e-17 90.5 75 54.7
Os08g0272000 Oryza sativa ssp. japonica HOM05D006125 ORTHO05D007404 6.5e-17 90.5 72 55.6
CiPaw.09G167300 Carya illinoinensis HOM05D006125 ORTHO05D007404 8.5e-17 90.1 82 54.9
QL07p031505 Quercus lobata HOM05D006125 ORTHO05D007404 1.1e-16 89.7 79 50.6
ATR0580G075 Amborella trichopoda HOM05D006125 ORTHO05D007404 1.5e-16 89.4 71 60.6
Ca_06644_v3 Cicer arietinum L. HOM05D006125 ORTHO05D007404 1.5e-16 89.4 87 52.9
ClCG09G003380 Citrullus lanatus HOM05D006125 ORTHO05D007404 1.5e-16 89.4 81 55.6
Duzib160G0610 Durio zibethinus HOM05D006125 ORTHO05D007404 1.9e-16 89.0 75 53.3
MBI14_g09098_MAGBIO Magnolia biondii HOM05D006125 ORTHO05D007404 3.2e-16 88.2 75 56.0
Nitab4.5_0009867g0040 Nicotiana tabacum HOM05D006125 ORTHO05D007404 3.2e-16 88.2 64 65.6
PGR031G3360 Punica granatum HOM05D006125 ORTHO05D007404 3.2e-16 88.2 75 53.3
PGR037G0004 Punica granatum HOM05D006125 ORTHO05D007404 3.2e-16 88.2 75 53.3
PGSC0003DMG400014151 Solanum tuberosum HOM05D006125 ORTHO05D007404 3.2e-16 88.2 84 53.6
Hma1.2p1_0329F.1_g127170 Hydrangea macrophylla HOM05D006125 ORTHO05D007404 4.2e-16 87.8 73 53.4
Manes.11G068700 Manihot esculenta HOM05D006125 ORTHO05D007404 4.2e-16 87.8 67 59.7
Psat7g263200 Pisum sativum HOM05D006125 ORTHO05D007404 4.2e-16 87.8 80 53.8
Eucgr.J03118 Eucalyptus grandis HOM05D006125 ORTHO05D007404 5.5e-16 87.4 78 55.1
Medtr4g007290 Medicago truncatula HOM05D006125 ORTHO05D007404 5.5e-16 87.4 81 54.3
Gohir.A06G114500 Gossypium hirsutum HOM05D006125 ORTHO05D007404 7.2e-16 87.0 65 58.5
Gohir.D06G119100 Gossypium hirsutum HOM05D006125 ORTHO05D007404 7.2e-16 87.0 65 58.5
Phvul.010G162500 Phaseolus vulgaris HOM05D006125 ORTHO05D007404 7.2e-16 87.0 82 52.4
Thecc.06G043200 Theobroma cacao HOM05D006125 ORTHO05D007404 7.2e-16 87.0 74 54.1
AUR62034053 Chenopodium quinoa HOM05D006125 ORTHO05D007404 9.4e-16 86.7 72 66.7
Oeu009806.1 Olea europaea HOM05D006125 ORTHO05D007404 9.4e-16 86.7 83 51.8
CARHR073580 Cardamine hirsuta HOM05D006125 ORTHO05D007404 1.2e-15 86.3 77 58.4
AUR62040628 Chenopodium quinoa HOM05D006125 ORTHO05D007404 1.2e-15 86.3 72 66.7
Solyc03g117580.3 Solanum lycopersicum HOM05D006125 ORTHO05D007404 1.2e-15 86.3 85 51.8
Sopen03g036490 Solanum pennellii HOM05D006125 ORTHO05D007404 1.2e-15 86.3 85 51.8
Dinv21417 Davidia involucrata HOM05D006125 ORTHO05D007404 1.6e-15 85.9 78 52.6
CAN.G407.2 Capsicum annuum HOM05D006125 ORTHO05D007404 2.1e-15 85.5 72 54.2
MELO3C023472.2 Cucumis melo HOM05D006125 ORTHO05D007404 2.1e-15 85.5 81 53.1
HanXRQChr05g0153751 Helianthus annuus HOM05D006125 ORTHO05D007404 2.7e-15 85.1 48 70.8
TAR383G0490 Trochodendron aralioides HOM05D006125 ORTHO05D007404 2.7e-15 85.1 67 56.7
arahy.Tifrunner.gnm1.ann1.CEK6A4 Arachis hypogaea HOM05D006125 ORTHO05D007404 3.6e-15 84.7 77 54.5
arahy.Tifrunner.gnm1.ann1.P1DY4U Arachis hypogaea HOM05D006125 ORTHO05D007404 3.6e-15 84.7 77 54.5
HPP92_003757 Vanilla planifolia HOM05D006125 ORTHO05D007404 4.7e-15 84.3 76 51.3
Sed0014955 Sechium edule HOM05D006125 ORTHO05D007404 8.0e-15 83.6 66 56.1
TPR.G29449 Trifolium pratense HOM05D006125 ORTHO05D007404 1.0e-14 83.2 84 51.2
Cc04_g05190 Coffea canephora HOM05D006125 ORTHO05D007404 1.4e-14 82.8 80 47.5
Duzib235G1153 Durio zibethinus HOM05D006125 ORTHO05D007404 1.4e-14 82.8 62 58.1
SalBow7G4057 Salvia bowleyana HOM05D006125 ORTHO05D007404 1.4e-14 82.8 80 46.2
Thhalv10019388m.g Eutrema salsugineum HOM05D006125 ORTHO05D007404 1.8e-14 82.4 58 58.6
ECA246G3825 Erigeron canadensis HOM05D006125 ORTHO05D007404 2.3e-14 82.0 48 70.8
EL10Ac8g19423 Beta vulgaris HOM05D006125 ORTHO05D007404 3.0e-14 81.6 80 58.8
THA.LOC104808176 Tarenaya hassleriana HOM05D006125 ORTHO05D007404 3.0e-14 81.6 79 68.4
AT1G80890 Arabidopsis thaliana HOM05D006125 ORTHO05D007404 4.0e-14 81.3 58 58.6
Migut.I00687 Erythranthe guttata HOM05D006125 ORTHO05D007404 5.2e-14 80.9 67 53.7
Manes.04G101402 Manihot esculenta HOM05D006125 ORTHO05D007404 5.2e-14 80.9 57 64.9
Sp5g34850 Schrenkiella parvula HOM05D006125 ORTHO05D007404 5.2e-14 80.9 67 70.1
TWI12G0957 Tripterygium wilfordii HOM05D006125 ORTHO05D007404 6.8e-14 80.5 75 48.0
Gorai.010G136700 Gossypium raimondii HOM05D006125 ORTHO05D007404 1.5e-13 79.3 71 52.1
Potri.001G043300 Populus trichocarpa HOM05D006125 ORTHO05D007404 2.0e-13 79.0 81 48.1
unitig_62.g23831 Utricularia gibba HOM05D006125 ORTHO05D007404 2.0e-13 79.0 75 52.0
Aa31LG4G1200 Aethionema arabicum HOM05D006125 ORTHO05D007404 4.4e-13 77.8 54 63.0
A07p44800 Brassica napus HOM05D006125 ORTHO05D007404 4.4e-13 77.8 56 57.1
C06p53620 Brassica napus HOM05D006125 ORTHO05D007404 4.4e-13 77.8 56 57.1
Rhsim08G0204300 Rhododendron simsii HOM05D006125 ORTHO05D007404 4.4e-13 77.8 93 47.3
BraA07t31987Z Brassica rapa HOM05D006125 ORTHO05D007404 5.7e-13 77.4 57 56.1
Sed0010339 Sechium edule HOM05D006125 ORTHO05D007404 5.7e-13 77.4 78 48.7
Carub.0001s1580 Capsella rubella HOM05D006125 ORTHO05D007404 9.8e-13 76.6 79 59.5
COL.COLO4_26743 Corchorus olitorius HOM05D006125 ORTHO05D007404 1.3e-12 76.3 51 64.7
PSO782G1324 Papaver somniferum HOM05D006125 ORTHO05D007404 1.3e-12 76.3 77 48.1
AT1G16000 Arabidopsis thaliana HOM05D006125 ORTHO05D007404 1.7e-12 75.9 46 65.2
Thhalv10009235m.g Eutrema salsugineum HOM05D006125 ORTHO05D007404 1.7e-12 75.9 75 62.7
TPR.G3325 Trifolium pratense HOM05D006125 ORTHO05D007404 2.8e-12 75.1 63 57.1
BcaB02g08714 Brassica carinata HOM05D006125 ORTHO05D007404 3.7e-12 74.7 55 56.4
BcaC08g47537 Brassica carinata HOM05D006125 ORTHO05D007404 3.7e-12 74.7 55 56.4
BolC6t40378H Brassica oleracea HOM05D006125 ORTHO05D007404 3.7e-12 74.7 55 56.4
Aa31LG7G580 Aethionema arabicum HOM05D006125 ORTHO05D007404 6.3e-12 73.9 46 67.4
GSVIVG01015983001 Vitis vinifera HOM05D006125 ORTHO05D007404 6.3e-12 73.9 43 69.8
DCAR_021146 Daucus carota HOM05D006125 ORTHO05D007404 8.3e-12 73.6 47 66.0
Sc12g0007910 Simmondsia chinensis HOM05D006125 ORTHO05D007404 8.3e-12 73.6 76 42.1
AL1G28160 Arabidopsis lyrata HOM05D006125 ORTHO05D007404 1.4e-11 72.8 56 51.8
Cpa.g.sc10.63 Carica papaya HOM05D006125 ORTHO05D007404 1.8e-11 72.4 69 66.7
CDE03G0106 Ceratophyllum demersum HOM05D006125 ORTHO05D007404 1.8e-11 72.4 77 57.1
Aqoxy7G03387 Aquilegia oxysepala HOM05D006125 ORTHO05D007404 2.4e-11 72.0 46 69.6
CDE06G2663 Ceratophyllum demersum HOM05D006125 ORTHO05D007404 4.1e-11 71.2 68 61.8
Dinv23278 Davidia involucrata HOM05D006125 ORTHO05D007404 5.4e-11 70.9 55 63.6
BcaC08g45345 Brassica carinata HOM05D006125 ORTHO05D007404 1.2e-10 69.7 81 58.0
C06p29590 Brassica napus HOM05D006125 ORTHO05D007404 1.2e-10 69.7 81 58.0
BolC6t38124H Brassica oleracea HOM05D006125 ORTHO05D007404 1.2e-10 69.7 81 58.0
BraA07t30336Z Brassica rapa HOM05D006125 ORTHO05D007404 1.2e-10 69.7 81 56.8
SHI11295 Sapria himalayana HOM05D000002 ORTHO05D000001 2.0e-10 68.9 55 56.4
Cfa017829 Carpinus fangiana HOM05D006125 ORTHO05D007404 4.5e-10 67.8 55 60.0
A07p26910 Brassica napus HOM05D006125 ORTHO05D007404 5.9e-10 67.4 74 58.1
CARHR016510 Cardamine hirsuta HOM05D006125 ORTHO05D007404 1.0e-09 66.6 50 56.0
HanXRQChr08g0219721 Helianthus annuus HOM05D006125 ORTHO05D007404 1.7e-09 65.9 38 65.8
SMO367G0251 Selaginella moellendorffii HOM05D010715 ORTHO05D015311 1.7e-09 65.9 43 62.8
Haze_20423 Corylus avellana HOM05D006125 ORTHO05D007404 3.8e-09 64.7 56 57.1
Sp1g14310 Schrenkiella parvula HOM05D006125 ORTHO05D007404 3.8e-09 64.7 40 62.5
SEGI_23088 Sequoiadendron giganteum HOM05D006125 ORTHO05D007404 5.0e-09 64.3 50 52.0
vmacro19061 Vaccinium macrocarpon HOM05D006125 ORTHO05D007404 6.5e-09 63.9 38 71.1
CsaV3_7G031850 Cucumis sativus L. HOM05D006125 ORTHO05D007404 1.1e-08 63.2 54 55.6
BcaB02g07240 Brassica carinata HOM05D005650 ORTHO05D007020 1.5e-08 62.8 54 50.0
SGA_v2.0_scaffold5G02790 Striga asiatica HOM05D006125 ORTHO05D007404 1.5e-08 62.8 49 51.0
QL04p040226 Quercus lobata HOM05D006125 ORTHO05D007404 3.2e-08 61.6 55 41.8
Potri.003G183501 Populus trichocarpa HOM05D006125 ORTHO05D007404 5.5e-08 60.8 60 43.3
Peaxi162Scf00553g00539 Petunia axillaris HOM05D006125 ORTHO05D007404 9.4e-08 60.1 77 46.8
Mapoly0116s0019 Marchantia polymorpha HOM05D006125 ORTHO05D007404 3.6e-07 58.2 41 51.2
Sabra01G0029800 Salix brachista HOM05D006125 ORTHO05D007404 6.1e-07 57.4 114 30.7
Pp3c10_10990 Physcomitrium patens HOM05D006125 ORTHO05D007404 1.0e-06 56.6 80 36.2
Sabra03G0134100 Salix brachista HOM05D006125 ORTHO05D007404 1.4e-06 56.2 51 51.0
BolC2t09694H Brassica oleracea HOM05D006125 ORTHO05D007404 2.3e-06 55.5 44 45.5


User provided reference genes

Program Settings