Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN14G2495 Fragaria x ananassa HOM05D003094 ORTHO05D003482 4.9e-230 800.8 417 100.0
FvH4_6g26830 Fragaria vesca HOM05D003094 ORTHO05D003482 5.4e-229 797.3 417 99.5
FAN05G2182 Fragaria x ananassa HOM05D003094 ORTHO05D003482 6.9e-224 780.4 417 97.4
FAN02G1016 Fragaria x ananassa HOM05D003094 ORTHO05D003482 1.7e-222 775.8 412 97.8
MD06G1220500 Malus domestica HOM05D003094 ORTHO05D003482 3.5e-167 592.0 425 74.1
MD14G1229900 Malus domestica HOM05D003094 ORTHO05D003482 4.5e-167 591.7 425 74.8
Prupe.5G224900 Prunus persica HOM05D003094 ORTHO05D003482 2.4e-160 569.3 428 72.4
CiPaw.16G089100 Carya illinoinensis HOM05D003094 ORTHO05D003482 5.9e-159 564.7 417 71.2
TWI60G1358 Tripterygium wilfordii HOM05D003094 ORTHO05D003482 2.5e-157 559.3 428 69.4
Ciclev10020325m.g Citrus clementina HOM05D003094 ORTHO05D003482 4.3e-157 558.5 425 69.9
GSVIVG01008338001 Vitis vinifera HOM05D003094 ORTHO05D003482 3.4e-154 548.9 422 68.7
ClCG06G014600 Citrullus lanatus HOM05D003094 ORTHO05D003482 3.7e-153 545.4 419 70.2
Haze_18734 Corylus avellana HOM05D003094 ORTHO05D003482 4.1e-152 542.0 447 66.2
Dinv12225 Davidia involucrata HOM05D003094 ORTHO05D003482 7.0e-152 541.2 417 67.9
Manes.05G133000 Manihot esculenta HOM05D003094 ORTHO05D003482 1.2e-151 540.4 427 68.4
MELO3C017325.2 Cucumis melo HOM05D003094 ORTHO05D003482 1.0e-150 537.3 420 69.0
Glyma.08G094700 Glycine max HOM05D003094 ORTHO05D003482 1.7e-150 536.6 420 68.3
Sed0020442 Sechium edule HOM05D003094 ORTHO05D003482 3.0e-150 535.8 413 68.3
Atru.chr9.905 Acer truncatum HOM05D003094 ORTHO05D003482 5.0e-150 535.0 426 67.6
CANSAT80G1577 Cannabis sativa HOM05D003094 ORTHO05D003482 6.6e-150 534.6 430 66.7
Cfa019732 Carpinus fangiana HOM05D003094 ORTHO05D003482 6.6e-150 534.6 447 65.3
Duzib213G0897 Durio zibethinus HOM05D003094 ORTHO05D003482 8.6e-150 534.3 427 66.0
Gohir.D13G151300 Gossypium hirsutum HOM05D003094 ORTHO05D003482 2.5e-149 532.7 422 66.1
Glyma.05G139400 Glycine max HOM05D003094 ORTHO05D003482 3.3e-149 532.3 420 67.4
Thecc.07G091700 Theobroma cacao HOM05D003094 ORTHO05D003482 3.3e-149 532.3 426 65.5
Psat7g083520 Pisum sativum HOM05D003094 ORTHO05D003482 5.6e-149 531.6 421 66.7
Gohir.A13G146900 Gossypium hirsutum HOM05D003094 ORTHO05D003482 2.1e-148 529.6 426 66.4
Cpa.g.sc51.5 Carica papaya HOM05D003094 ORTHO05D003482 4.7e-148 528.5 431 66.8
CsaV3_1G004020 Cucumis sativus L. HOM05D003094 ORTHO05D003482 6.2e-148 528.1 420 68.1
Gohir.A13G146300 Gossypium hirsutum HOM05D003094 ORTHO05D003482 6.2e-148 528.1 422 65.6
Phvul.002G182800 Phaseolus vulgaris HOM05D003094 ORTHO05D003482 6.2e-148 528.1 420 66.9
Ca_11586_v3 Cicer arietinum L. HOM05D003094 ORTHO05D003482 1.0e-147 527.3 425 66.4
Gohir.D13G152004 Gossypium hirsutum HOM05D003094 ORTHO05D003482 1.0e-147 527.3 423 66.4
VMungo0251G1973 Vigna mungo HOM05D003094 ORTHO05D003482 1.2e-146 523.9 422 66.8
vmacro07219 Vaccinium macrocarpon HOM05D003094 ORTHO05D003482 1.3e-145 520.4 406 66.5
TAR374G0309 Trochodendron aralioides HOM05D003094 ORTHO05D003482 3.7e-145 518.8 412 66.5
arahy.Tifrunner.gnm1.ann1.D1K70W Arachis hypogaea HOM05D003094 ORTHO05D003482 4.9e-145 518.5 430 65.1
PGR044G0078 Punica granatum HOM05D003094 ORTHO05D003482 8.3e-145 517.7 425 64.5
Sc04g0003380 Simmondsia chinensis HOM05D003094 ORTHO05D003482 8.3e-145 517.7 407 66.6
Nitab4.5_0001986g0070 Nicotiana tabacum HOM05D003094 ORTHO05D003482 1.1e-144 517.3 389 67.4
Eucgr.K02236 Eucalyptus grandis HOM05D003094 ORTHO05D003482 2.4e-144 516.2 435 63.4
Gorai.013G169300 Gossypium raimondii HOM05D003094 ORTHO05D003482 1.3e-142 510.4 423 65.2
Nitab4.5_0004955g0040 Nicotiana tabacum HOM05D003094 ORTHO05D003482 3.0e-142 509.2 383 67.1
Rhsim10G0183200 Rhododendron simsii HOM05D003094 ORTHO05D003482 5.0e-142 508.4 407 65.1
Actinidia36579 Actinidia chinensis HOM05D003094 ORTHO05D003482 6.6e-142 508.1 364 70.1
arahy.Tifrunner.gnm1.ann1.2IG2A1 Arachis hypogaea HOM05D003094 ORTHO05D003482 6.6e-142 508.1 419 64.7
Potri.015G044100 Populus trichocarpa HOM05D003094 ORTHO05D003482 6.6e-142 508.1 425 63.5
PGSC0003DMG402005733 Solanum tuberosum HOM05D003094 ORTHO05D003482 6.6e-142 508.1 396 65.9
THA.LOC104820380 Tarenaya hassleriana HOM05D003094 ORTHO05D003482 6.6e-142 508.1 432 63.0
QL10p026547 Quercus lobata HOM05D003094 ORTHO05D003482 1.1e-141 507.3 411 66.4
Solyc03g119170.3 Solanum lycopersicum HOM05D003094 ORTHO05D003482 2.1e-140 503.1 403 64.5
Lj9A424T34 Lonicera japonica HOM05D003094 ORTHO05D003482 1.1e-139 500.7 339 74.3
Peaxi162Scf00683g00159 Petunia axillaris HOM05D003094 ORTHO05D003482 1.8e-139 500.0 381 66.1
CSS0029576 Camellia sinensis var. sinensis HOM05D003094 ORTHO05D003482 2.3e-139 499.6 390 66.9
Lj4g0013095 Lotus japonicus HOM05D003094 ORTHO05D003482 2.3e-139 499.6 433 63.7
Actinidia19943 Actinidia chinensis HOM05D003094 ORTHO05D003482 5.2e-139 498.4 421 64.4
COL.COLO4_27184 Corchorus olitorius HOM05D003094 ORTHO05D003482 6.8e-139 498.0 427 62.1
Sopen03g038060 Solanum pennellii HOM05D003094 ORTHO05D003482 1.5e-138 496.9 440 61.6
Lalb_Chr08g0242311 Lupinus albus HOM05D003094 ORTHO05D003482 2.9e-137 492.7 425 63.5
Aa31LG8G5090 Aethionema arabicum HOM05D003094 ORTHO05D003482 1.9e-136 490.0 420 61.9
Oeu052057.1 Olea europaea HOM05D003094 ORTHO05D003482 4.1e-136 488.8 440 60.9
MBI16_g44830_MAGBIO Magnolia biondii HOM05D003094 ORTHO05D003482 5.4e-136 488.4 415 62.2
Migut.D00778 Erythranthe guttata HOM05D003094 ORTHO05D003482 1.7e-134 483.4 432 60.6
Cc04_g06860 Coffea canephora HOM05D003094 ORTHO05D003482 3.0e-134 482.6 411 63.3
A05p31440 Brassica napus HOM05D003094 ORTHO05D003482 6.6e-134 481.5 430 61.6
BraA05t21983Z Brassica rapa HOM05D003094 ORTHO05D003482 8.6e-134 481.1 430 61.6
Gorai.013G170500 Gossypium raimondii HOM05D003094 ORTHO05D003482 1.9e-133 479.9 422 61.8
AL3G31470 Arabidopsis lyrata HOM05D003094 ORTHO05D003482 4.3e-133 478.8 428 60.3
SGA_v2.0_scaffold29G12062 Striga asiatica HOM05D003094 ORTHO05D003482 5.6e-133 478.4 429 60.4
Thhalv10020806m.g Eutrema salsugineum HOM05D003094 ORTHO05D003482 7.3e-133 478.0 422 60.4
AT3G18240 Arabidopsis thaliana HOM05D003094 ORTHO05D003482 2.1e-132 476.5 432 60.2
Carub.0003s1800 Capsella rubella HOM05D003094 ORTHO05D003482 2.1e-132 476.5 418 60.8
C05p47760 Brassica napus HOM05D003094 ORTHO05D003482 3.6e-132 475.7 433 61.0
BolC5t33491H Brassica oleracea HOM05D003094 ORTHO05D003482 4.7e-132 475.3 432 60.9
AUR62042498 Chenopodium quinoa HOM05D003094 ORTHO05D003482 4.7e-132 475.3 419 60.4
EL10Ac4g10181 Beta vulgaris HOM05D003094 ORTHO05D003482 1.1e-131 474.2 412 62.4
EL10Ac7g16627 Beta vulgaris HOM05D003094 ORTHO05D003482 2.3e-131 473.0 411 62.5
CAN.G1129.13 Capsicum annuum HOM05D003094 ORTHO05D003482 5.2e-131 471.9 404 60.9
Sabra15G0041200 Salix brachista HOM05D003094 ORTHO05D003482 6.8e-131 471.5 513 53.4
Sp3g16360 Schrenkiella parvula HOM05D003094 ORTHO05D003482 8.9e-131 471.1 425 60.2
CARHR093590 Cardamine hirsuta HOM05D003094 ORTHO05D003482 5.8e-130 468.4 436 59.2
HanXRQChr14g0446571 Helianthus annuus HOM05D003094 ORTHO05D003482 5.8e-130 468.4 420 57.9
TPR.G5116 Trifolium pratense HOM05D003094 ORTHO05D003482 4.9e-129 465.3 421 61.5
Hund11930 Selenicereus undatus HOM05D003094 ORTHO05D003482 3.2e-128 462.6 400 61.5
AT4G21460 Arabidopsis thaliana HOM05D003094 ORTHO05D003482 7.1e-128 461.5 433 57.3
ATR0757G079 Amborella trichopoda HOM05D003094 ORTHO05D003482 7.8e-127 458.0 436 58.7
AUR62040348 Chenopodium quinoa HOM05D003094 ORTHO05D003482 7.8e-127 458.0 414 59.4
PSO017G6706 Papaver somniferum HOM05D003094 ORTHO05D003482 7.8e-127 458.0 395 61.3
PSO063G0897 Papaver somniferum HOM05D003094 ORTHO05D003482 3.0e-126 456.1 428 58.4
MSTRG.4516 Avicennia marina HOM05D003094 ORTHO05D003482 2.8e-124 449.5 423 58.9
ECA238G4750 Erigeron canadensis HOM05D003094 ORTHO05D003482 2.8e-124 449.5 360 60.8
Lsat_1_v5_gn_2_64400 Lactuca sativa HOM05D003094 ORTHO05D003482 8.1e-124 448.0 410 57.3
SalBow7G3604 Salvia bowleyana HOM05D003094 ORTHO05D003482 1.1e-123 447.6 423 57.2
Os08g0513300 Oryza sativa ssp. japonica HOM05D003094 ORTHO05D003482 1.8e-123 446.8 337 65.3
HPP92_008848 Vanilla planifolia HOM05D003094 ORTHO05D003482 8.7e-118 427.9 417 56.4
HPP92_008864 Vanilla planifolia HOM05D003094 ORTHO05D003482 8.7e-118 427.9 398 57.8
CDE11G0955 Ceratophyllum demersum HOM05D003094 ORTHO05D003482 1.6e-116 423.7 423 56.3
Zm00001eb143930 Zea mays HOM05D003094 ORTHO05D003482 8.1e-116 421.4 407 56.0
Nitab4.5_0004028g0060 Nicotiana tabacum HOM05D003094 ORTHO05D003482 2.4e-115 419.9 452 53.3
TAR374G0733 Trochodendron aralioides HOM05D003094 ORTHO05D003482 3.3e-109 399.4 393 56.2
unitig_21.g20424 Utricularia gibba HOM05D003094 ORTHO05D003482 3.7e-108 396.0 362 57.5
BcaC05g28647 Brassica carinata HOM05D003094 ORTHO05D003482 6.7e-102 375.2 254 71.7
Nitab4.5_0008678g0040 Nicotiana tabacum HOM05D003094 ORTHO05D003482 3.3e-101 372.9 452 50.0
RcHm_v2.0_Chr2g0128201 Rosa chinensis HOM05D003094 ORTHO05D003482 2.0e-98 363.6 235 82.1
SEGI_02552 Sequoiadendron giganteum HOM05D003094 ORTHO05D003482 2.0e-74 283.9 384 44.5
RcHm_v2.0_Chr2g0128191 Rosa chinensis HOM05D003094 ORTHO05D003482 1.1e-72 278.1 144 96.5
Nitab4.5_0008639g0020 Nicotiana tabacum HOM05D003094 ORTHO05D003482 6.7e-70 268.9 218 61.5
Prupe.4G184600 Prunus persica HOM05D003094 ORTHO05D003482 7.7e-66 255.4 158 77.8
TAR622G0867 Trochodendron aralioides HOM05D003094 ORTHO05D009164 2.7e-50 203.8 233 49.4
SHI53281 Sapria himalayana HOM05D003094 ORTHO05D003482 2.5e-48 197.2 218 55.5
Oeu010083.1 Olea europaea HOM05D003094 ORTHO05D003482 2.8e-47 193.7 285 41.8
Oeu010081.1 Olea europaea HOM05D003094 ORTHO05D003482 4.9e-44 183.0 138 64.5
Mapoly0002s0206 Marchantia polymorpha HOM05D003094 ORTHO05D003482 3.3e-32 143.7 116 62.9
Pp3c18_10090 Physcomitrium patens HOM05D003094 ORTHO05D003482 3.6e-31 140.2 97 71.1
Gohir.A06G136104 Gossypium hirsutum HOM05D003094 ORTHO05D003482 1.2e-29 135.2 101 65.3
CBR_g23797 Chara braunii HOM05D003094 ORTHO05D003482 3.9e-25 120.2 98 61.2
Gorai.002G151500 Gossypium raimondii HOM05D003094 ORTHO05D003482 3.3e-24 117.1 220 39.5
Oeu029034.1 Olea europaea HOM05D003094 ORTHO05D003482 1.4e-22 111.7 85 64.7
Dinv07353 Davidia involucrata HOM05D003094 ORTHO05D003482 2.3e-22 110.9 153 47.7
Dinv09627 Davidia involucrata HOM05D003094 ORTHO05D003482 4.0e-22 110.2 153 47.7
Gorai.011G161100 Gossypium raimondii HOM05D003094 ORTHO05D003482 2.0e-21 107.8 77 62.3
Gohir.D10G144200 Gossypium hirsutum HOM05D003094 ORTHO05D003482 1.3e-20 105.1 77 61.0
Gorai.003G056600 Gossypium raimondii HOM05D003094 ORTHO05D003482 1.3e-20 105.1 126 51.6
SMO367G0461 Selaginella moellendorffii HOM05D003094 ORTHO05D003482 1.3e-20 105.1 92 55.4
Gohir.D08G096900 Gossypium hirsutum HOM05D003094 ORTHO05D003482 1.7e-20 104.8 102 56.9
Dinv17506 Davidia involucrata HOM05D003094 ORTHO05D003482 2.2e-20 104.4 146 46.6
TPR.G35824 Trifolium pratense HOM05D003094 ORTHO05D003482 3.7e-20 103.6 173 43.4
BcaC05g28648 Brassica carinata HOM05D003094 ORTHO05D003482 1.4e-19 101.7 171 45.6
Nn3g17957 Nelumbo nucifera HOM05D003094 ORTHO05D003482 1.6e-18 98.2 77 61.0
Gohir.A02G112001 Gossypium hirsutum HOM05D003094 ORTHO05D003482 1.0e-17 95.5 72 66.7
Gohir.D09G047900 Gossypium hirsutum HOM05D003094 ORTHO05D003482 1.3e-17 95.1 139 46.8
Gorai.012G098500 Gossypium raimondii HOM05D000575 ORTHO05D003482 3.9e-17 93.6 72 65.3
Gorai.001G159100 Gossypium raimondii HOM05D003094 ORTHO05D003482 6.6e-17 92.8 91 56.0
Gohir.D10G153150 Gossypium hirsutum HOM05D003094 ORTHO05D003482 2.5e-16 90.9 72 62.5
Gohir.D05G318800 Gossypium hirsutum HOM05D003094 ORTHO05D003482 2.1e-15 87.8 91 54.9
Gohir.D07G182700 Gossypium hirsutum HOM05D003094 ORTHO05D003482 6.2e-15 86.3 73 58.9
vmacro16434 Vaccinium macrocarpon HOM05D003094 ORTHO05D003482 8.1e-15 85.9 149 40.9
CiPaw.16G089200 Carya illinoinensis HOM05D003094 ORTHO05D003482 3.2e-11 73.9 187 35.3
FAN08G1507 Fragaria x ananassa HOM05D003094 ORTHO05D003482 3.2e-11 73.9 168 36.3
FvH4_5g16690 Fragaria vesca HOM05D003094 ORTHO05D003482 4.1e-11 73.6 173 35.3
Gohir.A07G059300 Gossypium hirsutum HOM05D003094 ORTHO05D003482 1.2e-10 72.0 77 49.4
FAN18G0043 Fragaria x ananassa HOM05D003094 ORTHO05D003482 1.6e-10 71.6 173 34.7
Gohir.D07G064100 Gossypium hirsutum HOM05D003094 ORTHO05D003482 1.6e-10 71.6 105 42.9
Gorai.001G067600 Gossypium raimondii HOM05D003094 ORTHO05D003482 3.5e-10 70.5 105 41.9
Duzib084G0458 Durio zibethinus HOM05D003094 ORTHO05D003482 6.0e-10 69.7 77 46.8
RcHm_v2.0_Chr7g0179411 Rosa chinensis HOM05D003094 ORTHO05D003482 7.8e-10 69.3 176 33.5
FAN13G1164 Fragaria x ananassa HOM05D003094 ORTHO05D003482 8.7e-09 65.9 167 34.7
Prupe.5G225000 Prunus persica HOM05D003094 ORTHO05D003482 1.1e-08 65.5 158 36.7
Atru.chr9.906 Acer truncatum HOM05D003094 ORTHO05D003482 2.5e-08 64.3 145 37.9
Rhsim12G0141600 Rhododendron simsii HOM05D003094 ORTHO05D003482 2.5e-08 64.3 175 33.7
arahy.Tifrunner.gnm1.ann1.53L2ET Arachis hypogaea HOM05D010130 ORTHO05D010480 3.3e-08 63.9 168 37.5
Nitab4.5_0008639g0040 Nicotiana tabacum HOM05D000806 ORTHO05D002324 3.3e-08 63.9 78 46.2
Haze_18735 Corylus avellana HOM05D003094 ORTHO05D003482 5.6e-08 63.2 179 34.6
EL10Ac5g11481 Beta vulgaris HOM05D003094 ORTHO05D003482 7.3e-08 62.8 98 41.8
Cpa.g.sc3.463 Carica papaya HOM05D003094 ORTHO05D003482 7.3e-08 62.8 104 38.5
MD06G1220600 Malus domestica HOM05D003094 ORTHO05D003482 7.3e-08 62.8 164 36.0
QL10p026559 Quercus lobata HOM05D003094 ORTHO05D003482 1.2e-07 62.0 184 33.7
Aa31LG4G4100 Aethionema arabicum HOM05D003094 ORTHO05D003482 2.8e-07 60.8 62 38.7
Ah.11g047710 Amaranthus hybridus HOM05D003094 ORTHO05D003482 2.8e-07 60.8 105 39.0
Sc10g0009380 Simmondsia chinensis HOM05D003094 ORTHO05D003482 2.8e-07 60.8 149 37.6
C02p31410 Brassica napus HOM05D003094 ORTHO05D003482 3.6e-07 60.5 68 41.2
A02p18880 Brassica napus HOM05D003094 ORTHO05D003482 4.7e-07 60.1 67 40.3
Aqoxy1G00379 Aquilegia oxysepala HOM05D003094 ORTHO05D003482 6.2e-07 59.7 143 32.9
Cfa019731 Carpinus fangiana HOM05D003094 ORTHO05D003482 6.2e-07 59.7 185 33.5
COL.COLO4_38537 Corchorus olitorius HOM05D003094 ORTHO05D003482 6.2e-07 59.7 84 44.0
MCO03G327 Micromonas commoda HOM05D003094 ORTHO05D003482 6.2e-07 59.7 121 33.9
Potri.012G046000 Populus trichocarpa HOM05D003094 ORTHO05D003482 6.2e-07 59.7 161 37.3
PRCOL_00003227 Prasinoderma coloniale HOM05D003094 ORTHO05D003482 6.2e-07 59.7 176 29.0
Actinidia35101 Actinidia chinensis HOM05D003094 ORTHO05D003482 8.1e-07 59.3 125 35.2
arahy.Tifrunner.gnm1.ann1.J45ZPD Arachis hypogaea HOM05D003094 ORTHO05D003482 8.1e-07 59.3 164 35.4
BcaC03g15460 Brassica carinata HOM05D003094 ORTHO05D003482 8.1e-07 59.3 67 40.3
BolC2t09174H Brassica oleracea HOM05D003094 ORTHO05D003482 8.1e-07 59.3 67 40.3
Sed0019035 Sechium edule HOM05D003094 ORTHO05D003482 1.1e-06 58.9 129 38.0
AL2G33580 Arabidopsis lyrata HOM05D003094 ORTHO05D003482 1.4e-06 58.5 68 39.7
BcaB05g24812 Brassica carinata HOM05D003094 ORTHO05D003482 1.4e-06 58.5 83 39.8
BraA02t06932Z Brassica rapa HOM05D003094 ORTHO05D003482 1.8e-06 58.2 81 38.3
Nitab4.5_0001986g0080 Nicotiana tabacum HOM05D003094 ORTHO05D003482 1.8e-06 58.2 140 37.9
MELO3C002109.2 Cucumis melo HOM05D003094 ORTHO05D003482 2.4e-06 57.8 96 34.4
Thhalv10019822m.g Eutrema salsugineum HOM05D003094 ORTHO05D003482 2.4e-06 57.8 161 33.5
Peaxi162Scf00683g00019 Petunia axillaris HOM05D003094 ORTHO05D003482 2.4e-06 57.8 145 33.1
ClCG04G010900 Citrullus lanatus HOM05D003094 ORTHO05D003482 3.1e-06 57.4 148 32.4
Sp5g28960 Schrenkiella parvula HOM05D003094 ORTHO05D003482 3.1e-06 57.4 68 39.7
TWI81G0976 Tripterygium wilfordii HOM05D003094 ORTHO05D003482 3.1e-06 57.4 147 36.1
FAN04G1950 Fragaria x ananassa HOM05D003094 ORTHO05D003482 4.0e-06 57.0 173 31.8
Ciclev10023622m.g Citrus clementina HOM05D003094 ORTHO05D003482 9.0e-06 55.8 108 38.0


User provided reference genes

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