Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN14G2442 Fragaria x ananassa HOM05D007410 ORTHO05D009500 4.0e-127 459.9 803 100.0
FvH4_6g17750 Fragaria vesca HOM05D007410 ORTHO05D009500 1.8e-124 451.1 803 99.4
FAN02G1401 Fragaria x ananassa HOM05D007410 ORTHO05D009500 8.3e-117 425.6 803 97.8
FAN05G1927 Fragaria x ananassa HOM05D007410 ORTHO05D009500 3.6e-104 383.6 796 95.9
RcHm_v2.0_Chr3g0471971 Rosa chinensis HOM05D007410 ORTHO05D009500 4.3e-89 333.6 813 91.9
FAN09G1720 Fragaria x ananassa HOM05D007410 ORTHO05D009500 6.6e-82 309.7 212 83.0
MD14G1014400 Malus domestica HOM05D007410 ORTHO05D009500 1.9e-65 255.0 827 84.3
Prupe.7G119000 Prunus persica HOM05D007410 ORTHO05D009500 6.9e-63 246.5 239 58.2
MD12G1016300 Malus domestica HOM05D007410 ORTHO05D009500 3.7e-56 224.2 182 65.4
FAN09G0790 Fragaria x ananassa HOM05D007410 ORTHO05D009500 8.4e-53 213.0 177 96.6
Cfa016527 Carpinus fangiana HOM05D007410 ORTHO05D009500 2.1e-43 181.8 197 50.3
Eucgr.A01557 Eucalyptus grandis HOM05D007410 ORTHO05D009500 8.5e-37 159.8 151 56.3
TWI60G0552 Tripterygium wilfordii HOM05D007410 ORTHO05D009500 4.2e-36 157.5 201 47.3
QL02p025248 Quercus lobata HOM05D007410 ORTHO05D009500 6.7e-34 150.2 191 49.2
Haze_19526 Corylus avellana HOM05D007410 ORTHO05D009500 2.6e-33 148.3 166 51.8
Dinv34010 Davidia involucrata HOM05D007410 ORTHO05D009500 7.4e-33 146.7 138 58.7
CSS0026121 Camellia sinensis var. sinensis HOM05D007410 ORTHO05D009500 9.7e-33 146.4 177 70.6
Oeu023854.1 Olea europaea HOM05D007410 ORTHO05D009500 2.2e-32 145.2 210 44.3
Dinv39608 Davidia involucrata HOM05D007410 ORTHO05D009500 1.1e-31 142.9 177 67.8
DCAR_020784 Daucus carota HOM05D007410 ORTHO05D009500 7.0e-31 140.2 176 44.3
MELO3C006839.2 Cucumis melo HOM05D007410 ORTHO05D009500 3.5e-30 137.9 177 46.3
Aqoxy1G00955 Aquilegia oxysepala HOM05D007410 ORTHO05D009500 5.0e-29 134.0 232 36.6
DCAR_013956 Daucus carota HOM05D007410 ORTHO05D009500 5.0e-29 134.0 173 43.9
Hma1.2p1_0084F.1_g043130 Hydrangea macrophylla HOM05D007410 ORTHO05D009500 5.0e-29 134.0 125 56.8
Potri.010G249800 Populus trichocarpa HOM05D007410 ORTHO05D009500 1.1e-28 132.9 173 72.8
ClCG05G007520 Citrullus lanatus HOM05D007410 ORTHO05D009500 1.4e-28 132.5 170 47.1
CsaV3_3G016400 Cucumis sativus L. HOM05D007410 ORTHO05D009500 1.4e-28 132.5 174 47.7
Peaxi162Scf00802g00013 Petunia axillaris HOM05D007410 ORTHO05D009500 3.2e-28 131.3 183 44.3
SGA_v2.0_scaffold75G24801 Striga asiatica HOM05D007410 ORTHO05D009500 4.2e-28 131.0 175 44.0
TAR365G0607 Trochodendron aralioides HOM05D007410 ORTHO05D009500 5.5e-28 130.6 177 44.1
PGR004G1775 Punica granatum HOM05D007410 ORTHO05D009500 8.0e-27 126.7 183 45.9
Sed0018174 Sechium edule HOM05D007410 ORTHO05D009500 3.0e-26 124.8 179 48.0
Sabra10G0194300 Salix brachista HOM05D001909 ORTHO05D007079 3.9e-26 124.4 173 70.5
Nitab4.5_0001290g0100 Nicotiana tabacum HOM05D007410 ORTHO05D009500 5.2e-26 124.0 195 41.0
Nitab4.5_0026813g0010 Nicotiana tabacum HOM05D007410 ORTHO05D009500 5.2e-26 124.0 179 44.1
Nitab4.5_0005621g0120 Nicotiana tabacum HOM05D007410 ORTHO05D009500 8.8e-26 123.2 174 45.4
Oeu058028.1 Olea europaea HOM05D007410 ORTHO05D009500 2.0e-25 122.1 141 51.8
CANSAT80G0494 Cannabis sativa HOM05D007410 ORTHO05D009500 2.2e-24 118.6 172 69.8
Phvul.001G185900 Phaseolus vulgaris HOM05D007410 ORTHO05D009500 2.2e-24 118.6 166 47.0
Duzib093G0520 Durio zibethinus HOM05D007410 ORTHO05D009500 1.4e-23 115.9 177 68.9
Rhsim03G0082200 Rhododendron simsii HOM05D007410 ORTHO05D009500 1.8e-23 115.5 136 49.3
PGSC0003DMG400004719 Solanum tuberosum HOM05D007410 ORTHO05D009500 2.4e-23 115.2 173 63.0
Nn8g39918 Nelumbo nucifera HOM05D007410 ORTHO05D009500 3.1e-23 114.8 125 51.2
VMungo1383G0444 Vigna mungo HOM05D007410 ORTHO05D009500 3.1e-23 114.8 185 44.9
CAN.G575.91 Capsicum annuum HOM05D007410 ORTHO05D009500 5.3e-23 114.0 177 64.4
Atru.BG.129.p Acer truncatum HOM05D007410 ORTHO05D009500 7.0e-23 113.6 131 52.7
Gohir.D01G198900 Gossypium hirsutum HOM05D007410 ORTHO05D009500 3.5e-22 111.3 162 72.2
Gorai.002G243300 Gossypium raimondii HOM05D007410 ORTHO05D009500 3.5e-22 111.3 162 72.2
Gohir.A01G210000 Gossypium hirsutum HOM05D007410 ORTHO05D009500 7.7e-22 110.2 162 72.2
Lalb_Chr01g0018371 Lupinus albus HOM05D007410 ORTHO05D009500 1.3e-21 109.4 212 38.7
Aa31LG3G15130 Aethionema arabicum HOM05D007410 ORTHO05D009500 1.7e-21 109.0 208 33.2
CiPaw.09G007900 Carya illinoinensis HOM05D007410 ORTHO05D009500 2.2e-21 108.6 170 45.9
HanXRQChr17g0534281 Helianthus annuus HOM05D007410 ORTHO05D009500 2.2e-21 108.6 149 41.6
HanXRQChr17g0535541 Helianthus annuus HOM05D007410 ORTHO05D009500 3.8e-21 107.8 179 38.5
Sc18g0006010 Simmondsia chinensis HOM05D007410 ORTHO05D009500 6.5e-21 107.1 167 43.7
Glyma.19G190733 Glycine max HOM05D007410 ORTHO05D009500 8.5e-21 106.7 163 65.6
Glyma.03G190300 Glycine max HOM05D007410 ORTHO05D009500 1.1e-20 106.3 151 45.0
Carub.0006s1061 Capsella rubella HOM05D007410 ORTHO05D009500 1.5e-20 105.9 167 40.1
Atru.chr12.1036 Acer truncatum HOM05D007410 ORTHO05D009500 2.5e-20 105.1 135 46.7
AT5G12100 Arabidopsis thaliana HOM05D007410 ORTHO05D009500 7.2e-20 103.6 151 42.4
Sopen12g034470 Solanum pennellii HOM05D007410 ORTHO05D009500 9.4e-20 103.2 171 41.5
Sp6g31520 Schrenkiella parvula HOM05D007410 ORTHO05D009500 1.6e-19 102.4 157 39.5
BolC9t59308H Brassica oleracea HOM05D007410 ORTHO05D009500 2.7e-19 101.7 152 40.8
Solyc12g099840.1 Solanum lycopersicum HOM05D007410 ORTHO05D009500 4.7e-19 100.9 186 39.8
Migut.J00989 Erythranthe guttata HOM05D007410 ORTHO05D009500 6.1e-19 100.5 134 45.5
Psat2g007640 Pisum sativum HOM05D007410 ORTHO05D009500 8.0e-19 100.1 159 66.0
AUR62013683 Chenopodium quinoa HOM05D007410 ORTHO05D009500 1.8e-18 99.0 166 66.9
Lj1g0017625 Lotus japonicus HOM05D007410 ORTHO05D009500 3.0e-18 98.2 163 65.6
Manes.09G058000 Manihot esculenta HOM05D007410 ORTHO05D009500 3.0e-18 98.2 175 64.0
Atru.chr12.1030 Acer truncatum HOM05D007410 ORTHO05D009500 8.8e-18 96.7 125 51.2
C09p64770 Brassica napus HOM05D007410 ORTHO05D009500 8.8e-18 96.7 155 38.7
BcaNung06328 Brassica carinata HOM05D007410 ORTHO05D009500 1.2e-17 96.3 158 39.9
COL.COLO4_29826 Corchorus olitorius HOM05D007410 ORTHO05D009500 1.2e-17 96.3 72 61.1
Ca_08961_v3 Cicer arietinum L. HOM05D007410 ORTHO05D009500 2.0e-17 95.5 159 66.0
Medtr7g103600 Medicago truncatula HOM05D007410 ORTHO05D009500 2.0e-17 95.5 159 64.8
Glyma.19G190667 Glycine max HOM05D007410 ORTHO05D009500 2.6e-17 95.1 142 43.7
CARHR201020 Cardamine hirsuta HOM05D007410 ORTHO05D009500 4.4e-17 94.4 136 41.9
EL10Ac1g00861 Beta vulgaris HOM05D007410 ORTHO05D009500 3.7e-16 91.3 181 34.3
Cc06_g05130 Coffea canephora HOM05D007410 ORTHO05D009500 3.7e-16 91.3 138 44.9
A10p25700 Brassica napus HOM05D007410 ORTHO05D009500 4.8e-16 90.9 209 32.1
TPR.G28359 Trifolium pratense HOM05D007410 ORTHO05D009500 4.8e-16 90.9 159 64.8
BraA10t44635Z Brassica rapa HOM05D007410 ORTHO05D009500 6.3e-16 90.5 209 32.5
CDE01G0670 Ceratophyllum demersum HOM05D003192 ORTHO05D003596 4.1e-15 87.8 163 37.4
AUR62004183 Chenopodium quinoa HOM05D007410 ORTHO05D009500 5.3e-15 87.4 169 35.5
Lj9E304T4 Lonicera japonica HOM05D007410 ORTHO05D009500 1.2e-14 86.3 160 36.9
AL6G44470 Arabidopsis lyrata HOM05D007410 ORTHO05D009500 2.0e-14 85.5 108 42.6
SHI27720 Sapria himalayana HOM05D007410 ORTHO05D009500 4.5e-14 84.3 107 48.6
Cpa.g.sc117.70 Carica papaya HOM05D007410 ORTHO05D009500 5.9e-14 84.0 177 61.6
SGA_v2.0_scaffold40G15416 Striga asiatica HOM05D007410 ORTHO05D009500 5.9e-14 84.0 165 37.6
HPP92_024556 Vanilla planifolia HOM05D005651 ORTHO05D006877 2.2e-13 82.0 169 37.9
Ciclev10033972m.g Citrus clementina HOM05D007410 ORTHO05D009500 1.1e-12 79.7 135 40.0
PSO384G3142 Papaver somniferum HOM05D025533 ORTHO05D021545 1.9e-12 79.0 86 47.7
PSO135G0775 Papaver somniferum HOM05D025533 ORTHO05D021545 4.7e-11 74.3 86 44.2
Migut.A01169 Erythranthe guttata HOM05D007410 ORTHO05D009500 8.8e-10 70.1 175 58.9
Thecc.05G080100 Theobroma cacao HOM05D007410 ORTHO05D009500 1.2e-09 69.7 48 68.8
HanXRQChr02g0058171 Helianthus annuus HOM05D007410 ORTHO05D009500 4.4e-09 67.8 151 53.6
PSO210G6432 Papaver somniferum HOM05D007155 ORTHO05D003034 7.5e-09 67.0 117 29.9
PSO832G3824 Papaver somniferum HOM05D007155 ORTHO05D003034 1.3e-08 66.2 117 29.9
Thhalv10015810m.g Eutrema salsugineum HOM05D007410 ORTHO05D009500 8.3e-08 63.5 99 38.4
ECA233G1087 Erigeron canadensis HOM05D001398 ORTHO05D001467 2.4e-07 62.0 78 43.6
Lj9P304T66 Lonicera japonica HOM05D007410 ORTHO05D009500 2.4e-07 62.0 172 57.0
PGR083G0657 Punica granatum HOM05D007750 ORTHO05D009803 2.4e-07 62.0 126 30.2
ATR0820G257 Amborella trichopoda HOM05D007410 ORTHO05D009500 2.0e-06 58.9 60 45.0
FAN03G3455 Fragaria x ananassa HOM05D007212 ORTHO05D009094 2.0e-06 58.9 119 31.9
ATR0820G273 Amborella trichopoda HOM05D007410 ORTHO05D009500 2.7e-06 58.5 64 46.9
Phvul.011G027200 Phaseolus vulgaris HOM05D007212 ORTHO05D009094 2.7e-06 58.5 119 33.6
Ciclev10010938m.g Citrus clementina HOM05D005764 ORTHO05D006600 3.5e-06 58.2 113 32.7
Actinidia39878 Actinidia chinensis HOM05D007410 ORTHO05D009500 5.9e-06 57.4 61 47.5
Lalb_Chr01g0001381 Lupinus albus HOM05D007212 ORTHO05D009094 5.9e-06 57.4 119 32.8


User provided reference genes

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