Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN14G2428 Fragaria x ananassa HOM05D005844 ORTHO05D007203 3.3e-158 561.6 278 100.0
FAN05G4937 Fragaria x ananassa HOM05D005844 ORTHO05D007203 1.4e-151 539.7 278 96.4
FvH4_6g51630 Fragaria vesca HOM05D005844 ORTHO05D007203 7.5e-150 533.9 278 96.0
FAN09G1449 Fragaria x ananassa HOM05D005844 ORTHO05D007203 9.1e-148 526.9 278 94.6
FAN02G1237 Fragaria x ananassa HOM05D005844 ORTHO05D007203 1.3e-146 523.1 278 93.9
RcHm_v2.0_Chr2g0173161 Rosa chinensis HOM05D005844 ORTHO05D007203 2.1e-136 489.2 262 93.1
MD17G1023500 Malus domestica HOM05D005844 ORTHO05D007203 7.3e-121 437.6 292 77.4
Prupe.3G293000 Prunus persica HOM05D005844 ORTHO05D007203 4.6e-115 418.3 239 84.9
Ciclev10016139m.g Citrus clementina HOM05D005844 ORTHO05D007203 3.4e-110 402.1 259 74.9
Actinidia36121 Actinidia chinensis HOM05D005844 ORTHO05D007203 2.9e-109 399.1 230 79.6
Cfa007347 Carpinus fangiana HOM05D005844 ORTHO05D007203 6.4e-109 397.9 240 79.6
CiPaw.03G045000 Carya illinoinensis HOM05D005844 ORTHO05D007203 8.4e-109 397.5 276 72.8
Dinv33434 Davidia involucrata HOM05D005844 ORTHO05D007203 4.2e-108 395.2 254 74.8
Dinv09631 Davidia involucrata HOM05D005844 ORTHO05D007203 1.2e-107 393.7 254 74.0
Aqoxy5G03753 Aquilegia oxysepala HOM05D005844 ORTHO05D007203 1.6e-107 393.3 282 69.5
Actinidia05987 Actinidia chinensis HOM05D005844 ORTHO05D007203 4.6e-107 391.7 264 71.6
Potri.001G344000 Populus trichocarpa HOM05D005844 ORTHO05D007203 6.0e-107 391.3 249 75.1
Duzib187G1685 Durio zibethinus HOM05D005844 ORTHO05D007203 1.3e-106 390.2 228 78.9
THA.LOC104823955 Tarenaya hassleriana HOM05D005844 ORTHO05D007203 5.1e-106 388.3 285 67.7
Thecc.04G018700 Theobroma cacao HOM05D005844 ORTHO05D007203 3.3e-105 385.6 226 78.8
Cpa.g.c26638.3 Carica papaya HOM05D005844 ORTHO05D007203 3.6e-104 382.1 284 69.4
Hma1.2p1_2550F.1_g324230 Hydrangea macrophylla HOM05D005844 ORTHO05D007203 3.6e-104 382.1 281 68.3
CSS0012729 Camellia sinensis var. sinensis HOM05D005844 ORTHO05D007203 4.7e-104 381.7 261 69.3
Rhsim10G0015300 Rhododendron simsii HOM05D005844 ORTHO05D007203 1.1e-103 380.6 243 75.3
Rhsim10G0016000 Rhododendron simsii HOM05D005844 ORTHO05D007203 1.1e-103 380.6 243 75.3
Nn4g22606 Nelumbo nucifera HOM05D005844 ORTHO05D007203 1.4e-103 380.2 241 75.1
QL02p074142 Quercus lobata HOM05D005844 ORTHO05D007203 2.4e-103 379.4 279 66.7
Gohir.A05G355200 Gossypium hirsutum HOM05D005844 ORTHO05D007203 4.0e-103 378.6 275 68.7
Sc16g0003190 Simmondsia chinensis HOM05D005844 ORTHO05D007203 4.0e-103 378.6 221 79.6
vmacro05871 Vaccinium macrocarpon HOM05D005844 ORTHO05D007203 4.0e-103 378.6 281 67.6
Gohir.D04G058000 Gossypium hirsutum HOM05D005844 ORTHO05D007203 9.0e-103 377.5 275 68.4
CsaV3_5G027090 Cucumis sativus L. HOM05D005844 ORTHO05D007203 1.2e-102 377.1 278 68.0
SalBow7G1242 Salvia bowleyana HOM05D005844 ORTHO05D007203 1.5e-102 376.7 229 77.3
MSTRG.3288 Avicennia marina HOM05D005844 ORTHO05D007203 3.4e-102 375.6 277 70.0
ClCG09G019300 Citrullus lanatus HOM05D005844 ORTHO05D007203 5.8e-102 374.8 278 66.9
Gorai.012G064700 Gossypium raimondii HOM05D005844 ORTHO05D007203 7.6e-102 374.4 279 66.7
THA.LOC104805364 Tarenaya hassleriana HOM05D005844 ORTHO05D007203 7.6e-102 374.4 291 65.3
TWI56G0011 Tripterygium wilfordii HOM05D005844 ORTHO05D007203 7.6e-102 374.4 277 67.1
GSVIVG01032391001 Vitis vinifera HOM05D005844 ORTHO05D007203 7.6e-102 374.4 221 78.3
Cc07_g01570 Coffea canephora HOM05D005844 ORTHO05D007203 9.9e-102 374.0 228 76.3
TWI36G0829 Tripterygium wilfordii HOM05D005844 ORTHO05D007203 1.3e-101 373.6 231 74.9
COL.COLO4_29165 Corchorus olitorius HOM05D005844 ORTHO05D007203 2.2e-101 372.9 221 77.8
Solyc02g093390.4 Solanum lycopersicum HOM05D005844 ORTHO05D007203 4.9e-101 371.7 240 73.8
Sabra16G0223300 Salix brachista HOM05D005844 ORTHO05D007203 1.9e-100 369.8 271 68.3
PGR142G0612 Punica granatum HOM05D005844 ORTHO05D007203 3.2e-100 369.0 276 67.4
HanXRQChr02g0043121 Helianthus annuus HOM05D005844 ORTHO05D007203 5.4e-100 368.2 246 72.8
Manes.15G150500 Manihot esculenta HOM05D005844 ORTHO05D007203 5.4e-100 368.2 285 67.7
Nitab4.5_0003318g0030 Nicotiana tabacum HOM05D005844 ORTHO05D007203 5.4e-100 368.2 276 67.0
SGA_v2.0_scaffold18G08274 Striga asiatica HOM05D005844 ORTHO05D007203 5.4e-100 368.2 229 76.9
CANSAT64G0956 Cannabis sativa HOM05D005844 ORTHO05D007203 9.3e-100 367.5 289 65.7
Dinv07356 Davidia involucrata HOM05D005844 ORTHO05D007203 1.2e-99 367.1 250 70.0
BcaB06g27527 Brassica carinata HOM05D005844 ORTHO05D007203 2.1e-99 366.3 227 76.2
Migut.K01404 Erythranthe guttata HOM05D005844 ORTHO05D007203 3.5e-99 365.5 281 67.3
BcaB02g07945 Brassica carinata HOM05D005844 ORTHO05D007203 6.0e-99 364.8 274 66.1
Haze_14753 Corylus avellana HOM05D005844 ORTHO05D007203 7.8e-99 364.4 270 68.1
ECA247G4055 Erigeron canadensis HOM05D005844 ORTHO05D007203 1.0e-98 364.0 277 65.7
Sopen02g037980 Solanum pennellii HOM05D005844 ORTHO05D007203 2.3e-98 362.8 274 66.8
Medtr2g062880 Medicago truncatula HOM05D005844 ORTHO05D007203 3.0e-98 362.5 250 69.6
Sp7g01340 Schrenkiella parvula HOM05D005844 ORTHO05D007203 3.9e-98 362.1 286 65.7
Cfa007344 Carpinus fangiana HOM05D005844 ORTHO05D007203 8.7e-98 360.9 253 71.5
AL7G49290 Arabidopsis lyrata HOM05D005844 ORTHO05D007203 1.1e-97 360.5 228 75.4
C04p47350 Brassica napus HOM05D005844 ORTHO05D007203 1.1e-97 360.5 286 65.0
Thhalv10027875m.g Eutrema salsugineum HOM05D005844 ORTHO05D007203 1.1e-97 360.5 286 64.0
Eucgr.I01735 Eucalyptus grandis HOM05D005844 ORTHO05D007203 1.5e-97 360.1 277 65.3
Phvul.004G044500 Phaseolus vulgaris HOM05D005844 ORTHO05D007203 2.5e-97 359.4 263 66.9
DCAR_021727 Daucus carota HOM05D005844 ORTHO05D007203 4.3e-97 358.6 221 76.5
Aa31LG9G1090 Aethionema arabicum HOM05D005844 ORTHO05D007203 5.6e-97 358.2 228 73.7
VMungo0464G1123 Vigna mungo HOM05D005844 ORTHO05D007203 7.3e-97 357.8 227 72.2
Lj1g0026070 Lotus japonicus HOM05D005844 ORTHO05D007203 9.6e-97 357.5 240 70.8
A04p13570 Brassica napus HOM05D005844 ORTHO05D007203 1.3e-96 357.1 287 64.5
PGSC0003DMG400012605 Solanum tuberosum HOM05D005844 ORTHO05D007203 1.3e-96 357.1 277 64.3
unitig_46.g18705 Utricularia gibba HOM05D005844 ORTHO05D007203 4.8e-96 355.1 276 64.1
AT5G40530 Arabidopsis thaliana HOM05D005844 ORTHO05D007203 8.1e-96 354.4 260 68.8
Medtr7g033530 Medicago truncatula HOM05D005844 ORTHO05D007203 1.1e-95 354.0 250 69.2
arahy.Tifrunner.gnm1.ann1.RG8FT8 Arachis hypogaea HOM05D005844 ORTHO05D007203 1.8e-95 353.2 221 72.4
Carub.0007s3499 Capsella rubella HOM05D005844 ORTHO05D007203 2.4e-95 352.8 282 64.5
PSO407G0181 Papaver somniferum HOM05D005844 ORTHO05D007203 3.1e-95 352.4 245 69.4
Zm00001eb205620 Zea mays HOM05D005844 ORTHO05D007203 9.9e-94 347.4 229 69.4
Lalb_Chr08g0243241 Lupinus albus HOM05D005844 ORTHO05D007203 1.3e-93 347.1 278 61.9
Nitab4.5_0001860g0130 Nicotiana tabacum HOM05D005844 ORTHO05D007203 1.3e-93 347.1 276 64.9
PSO111G0092 Papaver somniferum HOM05D005844 ORTHO05D007203 1.7e-93 346.7 245 68.6
Os02g0593900 Oryza sativa ssp. japonica HOM05D005844 ORTHO05D007203 1.4e-92 343.6 236 67.8
Psat4g044480 Pisum sativum HOM05D005844 ORTHO05D007203 4.6e-91 338.6 297 58.9
ATR0824G194 Amborella trichopoda HOM05D005844 ORTHO05D007203 6.0e-91 338.2 284 60.6
MELO3C021585.2 Cucumis melo HOM05D005844 ORTHO05D007203 6.0e-91 338.2 278 62.6
CSS0002651 Camellia sinensis var. sinensis HOM05D005844 ORTHO05D007203 6.7e-90 334.7 283 60.8
HPP92_020245 Vanilla planifolia HOM05D005844 ORTHO05D007203 9.6e-89 330.9 274 59.5
Glyma.19G056800 Glycine max HOM05D005844 ORTHO05D007203 2.6e-86 322.8 262 61.5
CDE09G0856 Ceratophyllum demersum HOM05D005844 ORTHO05D007203 4.5e-86 322.0 201 73.1
Sed0014974 Sechium edule HOM05D005844 ORTHO05D007203 3.8e-85 318.9 239 67.8
Lj7A600G48 Lonicera japonica HOM05D005844 ORTHO05D007203 2.1e-83 313.2 183 80.3
BraA04t17017Z Brassica rapa HOM05D005844 ORTHO05D007203 3.5e-83 312.4 267 61.0
BolC4t26336H Brassica oleracea HOM05D005844 ORTHO05D007203 7.9e-83 311.2 267 61.4
SMO169G0126 Selaginella moellendorffii HOM05D005844 ORTHO05D007203 7.9e-83 311.2 221 66.5
Ca_08532_v3 Cicer arietinum L. HOM05D005844 ORTHO05D007203 1.3e-82 310.5 268 59.0
PSO754G0028 Papaver somniferum HOM05D005844 ORTHO05D007203 1.3e-82 310.5 249 60.6
Ca_25854_v3 Cicer arietinum L. HOM05D005844 ORTHO05D007203 4.3e-81 305.4 221 67.0
Glyma.16G069400 Glycine max HOM05D005844 ORTHO05D007203 7.4e-81 304.7 252 60.3
arahy.Tifrunner.gnm1.ann1.V6CENM Arachis hypogaea HOM05D005844 ORTHO05D007203 4.8e-80 302.0 260 58.8
Mapoly0055s0119 Marchantia polymorpha HOM05D005844 ORTHO05D007203 4.8e-80 302.0 226 61.5
TAR629G2614 Trochodendron aralioides HOM05D005844 ORTHO05D007203 8.2e-80 301.2 230 66.5
Peaxi162Scf00129g01647 Petunia axillaris HOM05D005844 ORTHO05D007203 1.4e-79 300.4 203 70.4
VMungo1215G2157 Vigna mungo HOM05D005844 ORTHO05D007203 3.1e-79 299.3 235 60.9
Pp3c18_8570 Physcomitrium patens HOM05D005844 ORTHO05D007203 4.9e-77 292.0 264 57.6
Hma1.2p1_1747F.1_g300470 Hydrangea macrophylla HOM05D005844 ORTHO05D007203 1.9e-76 290.0 183 75.4
CARHR261450 Cardamine hirsuta HOM05D005844 ORTHO05D007203 3.2e-76 289.3 179 77.1
EL10Ac6g14092 Beta vulgaris HOM05D005844 ORTHO05D007203 5.5e-76 288.5 273 56.4
AagrBONN_evm.TU.Sc2ySwM_344.1282 Anthoceros agrestis HOM05D005844 ORTHO05D007203 1.2e-75 287.3 280 55.0
MBI06_g16054_MAGBIO Magnolia biondii HOM05D005844 ORTHO05D007203 4.6e-75 285.4 300 54.0
Lsat_1_v5_gn_1_11001 Lactuca sativa HOM05D005844 ORTHO05D007203 1.3e-74 283.9 175 78.9
CBR_g37477 Chara braunii HOM05D005844 ORTHO05D007203 6.9e-71 271.6 272 52.6
Cfa007349 Carpinus fangiana HOM05D005844 ORTHO05D007203 7.7e-70 268.1 247 59.5
CAN.G473.16 Capsicum annuum HOM05D005844 ORTHO05D007203 1.4e-68 263.8 155 80.6
Ah.03g137020 Amaranthus hybridus HOM05D001812 ORTHO05D001874 4.8e-64 248.8 192 64.6
MCO16G365 Micromonas commoda HOM05D005844 ORTHO05D007203 1.0e-61 241.1 231 55.4
Cre07.g323450 Chlamydomonas reinhardtii HOM05D005844 ORTHO05D007203 6.1e-51 205.3 265 41.1
Atru.chr6.2417 Acer truncatum HOM05D005844 ORTHO05D007203 1.1e-47 194.5 113 81.4
vmacro09039 Vaccinium macrocarpon HOM05D005844 ORTHO05D007203 3.8e-45 186.0 268 44.0
SHI16461 Sapria himalayana HOM05D005844 ORTHO05D007203 5.0e-45 185.7 309 37.2
TPR.G1078 Trifolium pratense HOM05D005844 ORTHO05D007203 1.2e-43 181.0 126 67.5
TPR.G11046 Trifolium pratense HOM05D005844 ORTHO05D007203 1.6e-43 180.6 134 62.7
TPR.G35964 Trifolium pratense HOM05D005844 ORTHO05D007203 2.6e-41 173.3 113 72.6
TAR629G1250 Trochodendron aralioides HOM05D005844 ORTHO05D007203 1.4e-39 167.5 126 65.9
PRCOL_00001214 Prasinoderma coloniale HOM05D005844 ORTHO05D007203 7.0e-39 165.2 313 34.5
SMO202G0011 Selaginella moellendorffii HOM05D005844 ORTHO05D007203 4.2e-36 156.0 116 65.5
BolC4t27198H Brassica oleracea HOM05D005844 ORTHO05D007203 2.7e-30 136.7 130 57.7
Atru.chr2.3681 Acer truncatum HOM05D005844 ORTHO05D007203 5.0e-29 132.5 77 80.5
QL12p001810 Quercus lobata HOM05D005844 ORTHO05D007203 4.0e-26 122.9 72 76.4
Cfa024741 Carpinus fangiana HOM05D005844 ORTHO05D007203 1.2e-25 121.3 256 33.6
Rhsim10G0015100 Rhododendron simsii HOM05D014363 ORTHO05D019497 2.0e-25 120.6 74 71.6
SEGI_32629 Sequoiadendron giganteum HOM05D005844 ORTHO05D007203 8.3e-24 115.2 81 65.4
AUR62043289 Chenopodium quinoa HOM05D005844 ORTHO05D007203 5.8e-17 92.4 78 59.0
CARHR261460 Cardamine hirsuta HOM05D005844 ORTHO05D007203 1.3e-16 91.3 56 75.0
SHI16462 Sapria himalayana HOM05D005844 ORTHO05D007203 2.5e-12 77.0 84 51.2


User provided reference genes

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