Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN14G2337 Fragaria x ananassa HOM05D004642 ORTHO05D005466 3.4e-210 735.7 722 100.0
FvH4_6g31081 Fragaria vesca HOM05D004642 ORTHO05D005466 8.6e-206 721.1 722 98.6
FAN09G1651 Fragaria x ananassa HOM05D004642 ORTHO05D005466 3.6e-164 582.8 723 87.1
FAN05G5776 Fragaria x ananassa HOM05D004642 ORTHO05D005466 2.5e-149 533.5 723 85.6
RcHm_v2.0_Chr2g0137781 Rosa chinensis HOM05D004642 ORTHO05D005466 1.3e-137 494.6 727 76.9
Prupe.3G071700 Prunus persica HOM05D004642 ORTHO05D005466 2.6e-117 427.2 717 49.9
QL05p024308 Quercus lobata HOM05D004642 ORTHO05D005466 4.4e-101 373.2 735 55.1
MD17G1195700 Malus domestica HOM05D004642 ORTHO05D005466 1.5e-96 358.2 729 49.4
FAN02G1410 Fragaria x ananassa HOM05D004642 ORTHO05D005466 1.2e-90 338.6 236 85.2
Cfa002061 Carpinus fangiana HOM05D004642 ORTHO05D005466 7.3e-88 329.3 537 54.7
MD09G1213800 Malus domestica HOM05D004642 ORTHO05D005466 8.0e-87 325.9 701 58.1
CiPaw.01G239700 Carya illinoinensis HOM05D004642 ORTHO05D005466 1.0e-86 325.5 724 59.7
Actinidia24760 Actinidia chinensis HOM05D004642 ORTHO05D005466 4.0e-78 297.0 531 48.8
Potri.001G179600 Populus trichocarpa HOM05D004642 ORTHO05D005466 1.7e-76 291.6 712 44.9
Gorai.009G133100 Gossypium raimondii HOM05D004642 ORTHO05D005466 6.4e-76 289.7 542 46.7
Gohir.D05G129000 Gossypium hirsutum HOM05D004642 ORTHO05D005466 1.1e-75 288.9 543 47.7
CiPaw.02G151400 Carya illinoinensis HOM05D004642 ORTHO05D005466 1.9e-75 288.1 717 54.7
Actinidia08974 Actinidia chinensis HOM05D004642 ORTHO05D005466 3.2e-75 287.3 718 52.1
Thecc.06G086400 Theobroma cacao HOM05D004642 ORTHO05D005466 2.8e-71 274.2 767 51.2
Gohir.A05G129515 Gossypium hirsutum HOM05D004642 ORTHO05D005466 3.6e-71 273.9 543 45.7
Haze_16437 Corylus avellana HOM05D004642 ORTHO05D005466 2.9e-68 264.2 637 48.0
Duzib235G0715 Durio zibethinus HOM05D004642 ORTHO05D005466 3.7e-68 263.8 759 52.3
Manes.11G047800 Manihot esculenta HOM05D004642 ORTHO05D005466 6.4e-68 263.1 731 59.8
Duzib192G0922 Durio zibethinus HOM05D004642 ORTHO05D005466 7.3e-64 249.6 550 50.0
CsaV3_7G033140 Cucumis sativus L. HOM05D004642 ORTHO05D005466 1.2e-63 248.8 724 54.6
Nitab4.5_0005851g0030 Nicotiana tabacum HOM05D004642 ORTHO05D005466 2.1e-63 248.1 717 43.0
Rhsim08G0221000 Rhododendron simsii HOM05D004642 ORTHO05D005466 8.1e-63 246.1 708 45.5
Gohir.D09G083200 Gossypium hirsutum HOM05D004642 ORTHO05D005466 3.1e-62 244.2 564 36.9
GSVIVG01017115001 Vitis vinifera HOM05D004642 ORTHO05D005466 4.0e-62 243.8 539 48.2
Nitab4.5_0000671g0060 Nicotiana tabacum HOM05D004642 ORTHO05D005466 5.2e-62 243.4 540 43.7
Gorai.006G098800 Gossypium raimondii HOM05D004642 ORTHO05D005466 2.6e-61 241.1 568 35.4
Gohir.A09G083200 Gossypium hirsutum HOM05D004642 ORTHO05D005466 4.4e-61 240.4 564 34.9
Cc04_g03480 Coffea canephora HOM05D004642 ORTHO05D005466 9.9e-61 239.2 677 38.0
Sabra01G0147200 Salix brachista HOM05D004642 ORTHO05D005466 1.3e-60 238.8 832 47.2
vmacro18915 Vaccinium macrocarpon HOM05D004642 ORTHO05D005466 1.7e-60 238.4 531 40.7
Dinv30514 Davidia involucrata HOM05D004642 ORTHO05D005466 1.9e-59 235.0 621 56.7
vmacro16950 Vaccinium macrocarpon HOM05D004642 ORTHO05D005466 6.0e-58 229.9 717 55.2
CSS0030593 Camellia sinensis var. sinensis HOM05D004642 ORTHO05D005466 1.0e-57 229.2 568 57.6
ClCG09G002170 Citrullus lanatus HOM05D004642 ORTHO05D005466 1.0e-57 229.2 726 55.8
Hma1.2p1_0323F.1_g125210 Hydrangea macrophylla HOM05D004642 ORTHO05D005466 3.3e-56 224.2 725 50.8
Sed0016916 Sechium edule HOM05D004642 ORTHO05D005466 5.6e-56 223.4 729 48.8
Solyc03g120230.3 Solanum lycopersicum HOM05D004642 ORTHO05D005466 5.6e-56 223.4 525 46.7
TWI75G1656 Tripterygium wilfordii HOM05D004642 ORTHO05D005466 1.3e-55 222.2 537 47.5
COL.COLO4_30362 Corchorus olitorius HOM05D004642 ORTHO05D005466 2.8e-55 221.1 588 49.1
Atru.chr1.3266 Acer truncatum HOM05D004642 ORTHO05D005466 1.1e-54 219.2 733 52.9
Ciclev10025273m.g Citrus clementina HOM05D004642 ORTHO05D005466 1.4e-54 218.8 564 58.7
Rhsim12G0197600 Rhododendron simsii HOM05D004642 ORTHO05D005466 1.8e-54 218.4 724 53.5
PGR102G3321 Punica granatum HOM05D004642 ORTHO05D005466 3.1e-54 217.6 530 42.8
PGSC0003DMG400002564 Solanum tuberosum HOM05D004642 ORTHO05D005466 5.3e-54 216.9 678 47.8
MELO3C024228.2 Cucumis melo HOM05D004642 ORTHO05D005466 6.9e-54 216.5 725 52.3
Sopen03g039110 Solanum pennellii HOM05D004642 ORTHO05D005466 2.0e-53 214.9 718 47.4
Lalb_Chr04g0262651 Lupinus albus HOM05D004642 ORTHO05D005466 1.7e-52 211.8 506 41.5
Glyma.12G087100 Glycine max HOM05D004642 ORTHO05D005466 2.2e-52 211.5 522 41.2
CANSAT56G1090 Cannabis sativa HOM05D004642 ORTHO05D005466 1.1e-51 209.1 738 64.0
Lalb_Chr14g0373421 Lupinus albus HOM05D004642 ORTHO05D005466 7.1e-51 206.5 680 40.3
Eucgr.F03012 Eucalyptus grandis HOM05D004642 ORTHO05D005466 9.3e-51 206.1 371 55.3
TAR626G0806 Trochodendron aralioides HOM05D004642 ORTHO05D005466 6.0e-50 203.4 717 42.4
Aa31LG8G3170 Aethionema arabicum HOM05D004642 ORTHO05D005466 1.1e-48 199.1 524 36.3
CAN.G438.64 Capsicum annuum HOM05D004642 ORTHO05D005466 1.5e-48 198.7 720 55.3
Peaxi162Scf00015g00335 Petunia axillaris HOM05D004642 ORTHO05D005466 1.5e-48 198.7 516 51.2
Ca_19383_v3 Cicer arietinum L. HOM05D004642 ORTHO05D005466 1.9e-48 198.4 719 53.8
Lalb_Chr01g0012651 Lupinus albus HOM05D004642 ORTHO05D005466 3.3e-48 197.6 445 43.4
Lj3g0008789 Lotus japonicus HOM05D004642 ORTHO05D005466 7.3e-48 196.4 747 48.6
Hund00614 Selenicereus undatus HOM05D004642 ORTHO05D005466 6.2e-47 193.4 632 55.4
Phvul.011G092000 Phaseolus vulgaris HOM05D004642 ORTHO05D005466 8.1e-47 193.0 706 52.4
Thhalv10020153m.g Eutrema salsugineum HOM05D004642 ORTHO05D005466 4.0e-46 190.7 531 34.1
PSO782G0786 Papaver somniferum HOM05D004642 ORTHO05D005466 2.6e-45 188.0 393 33.6
Aqoxy7G01787 Aquilegia oxysepala HOM05D004642 ORTHO05D005466 9.9e-45 186.0 517 41.2
VMungo1127G1134 Vigna mungo HOM05D004642 ORTHO05D005466 1.3e-44 185.7 703 49.5
CARHR091130 Cardamine hirsuta HOM05D004642 ORTHO05D005466 1.4e-43 182.2 529 32.5
Oeu033484.1 Olea europaea HOM05D004642 ORTHO05D005466 4.2e-43 180.6 496 39.7
THA.LOC104817998 Tarenaya hassleriana HOM05D004642 ORTHO05D005466 3.0e-41 174.5 521 47.2
Lsat_1_v5_gn_4_103580 Lactuca sativa HOM05D004642 ORTHO05D005466 8.7e-41 172.9 726 45.5
Sp3g14350 Schrenkiella parvula HOM05D004642 ORTHO05D005466 1.1e-40 172.6 527 46.3
AL3G28650 Arabidopsis lyrata HOM05D004642 ORTHO05D005466 3.7e-39 167.5 527 44.8
A03p39630 Brassica napus HOM05D004642 ORTHO05D005466 4.8e-39 167.2 469 40.9
A05p33450 Brassica napus HOM05D004642 ORTHO05D005466 4.8e-39 167.2 526 42.2
BcaC01g03843 Brassica carinata HOM05D004642 ORTHO05D005466 8.1e-39 166.4 471 45.4
C03p48030 Brassica napus HOM05D004642 ORTHO05D005466 8.1e-39 166.4 471 45.4
BolC3t17082H Brassica oleracea HOM05D004642 ORTHO05D005466 8.1e-39 166.4 471 45.4
Lj5A61G44 Lonicera japonica HOM05D004642 ORTHO05D005466 1.1e-38 166.0 447 40.7
Hma1.2p1_0323F.1_g125200 Hydrangea macrophylla HOM05D004642 ORTHO05D005466 1.4e-38 165.6 166 56.0
AUR62011627 Chenopodium quinoa HOM05D004642 ORTHO05D005466 1.8e-38 165.2 471 41.2
AUR62016441 Chenopodium quinoa HOM05D004642 ORTHO05D005466 1.8e-38 165.2 658 37.7
BraA03t13110Z Brassica rapa HOM05D004642 ORTHO05D005466 2.4e-38 164.9 522 39.5
arahy.Tifrunner.gnm1.ann1.D5EQ93 Arachis hypogaea HOM05D004642 ORTHO05D005466 3.1e-38 164.5 438 47.5
Psat7g189080 Pisum sativum HOM05D004642 ORTHO05D005466 6.9e-38 163.3 726 49.0
SalBow2G2616 Salvia bowleyana HOM05D004642 ORTHO05D005466 6.9e-38 163.3 523 46.5
MD09G1213500 Malus domestica HOM05D004642 ORTHO05D005466 1.2e-37 162.5 324 50.0
SGA_v2.0_scaffold4G01996 Striga asiatica HOM05D004642 ORTHO05D005466 1.2e-37 162.5 538 36.2
SalBow2G0306 Salvia bowleyana HOM05D004642 ORTHO05D005466 2.6e-37 161.4 666 40.2
AT3G16000 Arabidopsis thaliana HOM05D004642 ORTHO05D005466 3.4e-37 161.0 531 44.4
Nn8g39228 Nelumbo nucifera HOM05D004642 ORTHO05D005466 3.4e-37 161.0 729 46.6
BcaB06g25698 Brassica carinata HOM05D004642 ORTHO05D005466 4.5e-37 160.6 525 40.6
BcaB04g18872 Brassica carinata HOM05D004642 ORTHO05D005466 5.8e-37 160.2 477 43.8
Glyma.11G187500 Glycine max HOM05D004642 ORTHO05D005466 7.6e-37 159.8 702 42.3
arahy.Tifrunner.gnm1.ann1.I53961 Arachis hypogaea HOM05D004642 ORTHO05D005466 1.7e-36 158.7 439 46.0
Sed0016127 Sechium edule HOM05D004642 ORTHO05D005466 1.7e-36 158.7 416 35.8
Carub.0003s1573 Capsella rubella HOM05D004642 ORTHO05D005466 1.1e-35 156.0 527 44.0
Nn2g11790 Nelumbo nucifera HOM05D004642 ORTHO05D005466 4.2e-35 154.1 732 41.1
BraA05t22169Z Brassica rapa HOM05D004642 ORTHO05D005466 3.5e-34 151.0 525 46.9
Medtr4g054960 Medicago truncatula HOM05D004642 ORTHO05D005466 7.9e-34 149.8 495 45.5
TAR636G0382 Trochodendron aralioides HOM05D004642 ORTHO05D005466 1.3e-33 149.1 239 42.7
BolC5t33791H Brassica oleracea HOM05D004642 ORTHO05D005466 2.5e-32 144.8 525 44.4
TPR.G15588 Trifolium pratense HOM05D004642 ORTHO05D005466 2.5e-32 144.8 631 53.4
C05p50450 Brassica napus HOM05D004642 ORTHO05D005466 5.7e-32 143.7 429 50.1
arahy.Tifrunner.gnm1.ann1.CA04QB Arachis hypogaea HOM05D004642 ORTHO05D005466 7.4e-32 143.3 662 50.8
arahy.Tifrunner.gnm1.ann1.Z6VQ0W Arachis hypogaea HOM05D004642 ORTHO05D005466 7.4e-32 143.3 662 50.8
PSO063G4770 Papaver somniferum HOM05D004642 ORTHO05D005466 2.8e-31 141.4 414 31.6
Ah.01g021290 Amaranthus hybridus HOM05D004642 ORTHO05D005466 2.0e-29 135.2 529 40.5
Zm00001eb283760 Zea mays HOM05D004642 ORTHO05D005466 3.4e-29 134.4 485 34.0
Dinv38051 Davidia involucrata HOM05D004642 ORTHO05D005466 1.9e-27 128.6 335 36.1
ECA248G0988 Erigeron canadensis HOM05D004642 ORTHO05D005466 2.5e-27 128.3 430 38.4
MSTRG.9454 Avicennia marina HOM05D004642 ORTHO05D005466 4.6e-26 124.0 522 50.0
HanXRQChr09g0275271 Helianthus annuus HOM05D004642 ORTHO05D005466 4.6e-26 124.0 222 41.0
Sc21g0005100 Simmondsia chinensis HOM05D004642 ORTHO05D005466 2.3e-25 121.7 442 48.0
BcaC09g48580 Brassica carinata HOM05D004642 ORTHO05D005466 2.5e-24 118.2 481 26.2
MD09G1212900 Malus domestica HOM05D004642 ORTHO05D005466 2.4e-22 111.7 125 54.4
EL10Ac9g21996 Beta vulgaris HOM05D004642 ORTHO05D005466 6.9e-22 110.2 429 43.6
Hund06610 Selenicereus undatus HOM05D004642 ORTHO05D005466 9.0e-22 109.8 531 37.9
SGA_v2.0_scaffold37G14818 Striga asiatica HOM05D004642 ORTHO05D005466 3.4e-21 107.8 421 47.5
HanXRQChr16g0500971 Helianthus annuus HOM05D004642 ORTHO05D005466 1.7e-20 105.5 191 40.8
Migut.D01034 Erythranthe guttata HOM05D004642 ORTHO05D005466 2.5e-19 101.7 193 36.3
BcaB04g20887 Brassica carinata HOM05D004642 ORTHO05D005466 1.6e-18 99.0 411 27.0
HPP92_020045 Vanilla planifolia HOM05D004642 ORTHO05D005466 3.6e-18 97.8 372 25.0
unitig_744.g24335 Utricularia gibba HOM05D004642 ORTHO05D005466 7.9e-18 96.7 416 32.7
CDE07G1358 Ceratophyllum demersum HOM05D004642 ORTHO05D005466 5.1e-17 94.0 421 22.6
C01p48370 Brassica napus HOM05D004642 ORTHO05D005466 8.8e-17 93.2 474 25.1
CDE06G0246 Ceratophyllum demersum HOM05D004642 ORTHO05D005466 3.3e-16 91.3 421 22.3
Os05g0180400 Oryza sativa ssp. japonica HOM05D004642 ORTHO05D005466 1.7e-15 89.0 394 31.5
ATR0037G055 Amborella trichopoda HOM05D004642 ORTHO05D005466 2.2e-15 88.6 393 42.2
BolC1t04795H Brassica oleracea HOM05D004642 ORTHO05D005466 1.4e-14 85.9 195 33.8
unitig_578.g16688 Utricularia gibba HOM05D004642 ORTHO05D005466 2.6e-13 81.6 512 31.8
TAR624G0442 Trochodendron aralioides HOM05D004642 ORTHO05D005466 5.0e-12 77.4 85 51.8
MD09G1213400 Malus domestica HOM05D004642 ORTHO05D005466 2.5e-11 75.1 60 65.0
Cpa.g.sc1188.1 Carica papaya HOM05D004642 ORTHO05D005466 4.2e-11 74.3 310 65.5
Os01g0180300 Oryza sativa ssp. japonica HOM05D004642 ORTHO05D005466 7.9e-10 70.1 485 29.9
HPP92_019980 Vanilla planifolia HOM05D004642 ORTHO05D005466 3.9e-09 67.8 344 38.4
CDE07G0399 Ceratophyllum demersum HOM05D004642 ORTHO05D005466 2.6e-08 65.1 410 21.5
MD09G1213300 Malus domestica HOM05D004642 ORTHO05D005466 2.6e-08 65.1 53 67.9
A01p38100 Brassica napus HOM05D015723 ORTHO05D003275 3.3e-08 64.7 194 28.4
CSS0005738 Camellia sinensis var. sinensis HOM05D004642 ORTHO05D005466 5.7e-08 63.9 53 62.3
TAR624G1258 Trochodendron aralioides HOM05D004642 ORTHO05D005466 5.7e-08 63.9 64 59.4
Glyma.11G237600 Glycine max HOM05D004642 ORTHO05D005466 7.4e-08 63.5 112 34.8
BraA01t03868Z Brassica rapa HOM05D004642 ORTHO05D005466 1.1e-06 59.7 196 28.1
SEGI_16798 Sequoiadendron giganteum HOM05D004642 ORTHO05D005466 1.8e-06 58.9 451 27.7
Zm00001eb122200 Zea mays HOM05D004642 ORTHO05D005466 1.8e-06 58.9 174 33.9


User provided reference genes

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