Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN14G2280 Fragaria x ananassa HOM05D007178 ORTHO05D009022 1.4e-34 149.1 74 100.0
FvH4_6g47640 Fragaria vesca HOM05D007178 ORTHO05D009022 3.4e-33 144.4 74 97.3
FvH4_3g19851 Fragaria vesca HOM05D007178 ORTHO05D009022 2.5e-28 128.3 65 98.5
FvH4_7g10051 Fragaria vesca HOM05D007178 ORTHO05D009022 8.1e-27 123.2 68 89.7
FvH4_3g05190 Fragaria vesca HOM05D007178 ORTHO05D009022 1.3e-13 79.3 42 88.1
FAN16G3072 Fragaria x ananassa HOM05D007178 ORTHO05D009022 1.3e-13 79.3 42 88.1
FAN21G4020 Fragaria x ananassa HOM05D007178 ORTHO05D009022 1.3e-13 79.3 42 88.1
RcHm_v2.0_Chr5g0014561 Rosa chinensis HOM05D007178 ORTHO05D009022 1.3e-13 79.3 42 88.1
FAN11G0307 Fragaria x ananassa HOM05D007178 ORTHO05D009022 2.3e-13 78.6 39 94.9
FAN25G1793 Fragaria x ananassa HOM05D007178 ORTHO05D009022 3.0e-13 78.2 42 85.7
ATR1098G109 Amborella trichopoda HOM05D007178 ORTHO05D009022 1.3e-11 72.8 43 79.1
Actinidia13672 Actinidia chinensis HOM05D007178 ORTHO05D009022 2.1e-11 72.0 43 74.4
Thecc.06G146700 Theobroma cacao HOM05D007178 ORTHO05D009022 3.7e-11 71.2 42 76.2
MELO3C007115.2 Cucumis melo HOM05D007178 ORTHO05D009022 6.2e-11 70.5 42 78.6
CsaV3_6G051920 Cucumis sativus L. HOM05D007178 ORTHO05D009022 6.2e-11 70.5 42 78.6
MD05G1280800 Malus domestica HOM05D007178 ORTHO05D009022 6.2e-11 70.5 42 73.8
MD10G1259200 Malus domestica HOM05D007178 ORTHO05D009022 6.2e-11 70.5 42 73.8
QL05p055487 Quercus lobata HOM05D007178 ORTHO05D009022 6.2e-11 70.5 42 73.8
vmacro03352 Vaccinium macrocarpon HOM05D007178 ORTHO05D009022 6.2e-11 70.5 42 73.8
VMungo0464G0906 Vigna mungo HOM05D007178 ORTHO05D009022 6.2e-11 70.5 54 55.6
Duzib235G1408 Durio zibethinus HOM05D007178 ORTHO05D009022 8.1e-11 70.1 42 73.8
arahy.Tifrunner.gnm1.ann1.WWKL6Q Arachis hypogaea HOM05D007178 ORTHO05D009022 1.1e-10 69.7 64 54.7
CSS0006510 Camellia sinensis var. sinensis HOM05D007178 ORTHO05D009022 1.1e-10 69.7 42 73.8
CiPaw.09G121000 Carya illinoinensis HOM05D007178 ORTHO05D009022 1.1e-10 69.7 42 73.8
COL.COLO4_31031 Corchorus olitorius HOM05D007178 ORTHO05D009022 1.1e-10 69.7 40 80.0
Dinv32223 Davidia involucrata HOM05D007178 ORTHO05D009022 1.1e-10 69.7 42 73.8
Migut.M00887 Erythranthe guttata HOM05D007178 ORTHO05D009022 1.1e-10 69.7 42 76.2
Prupe.4G084100 Prunus persica HOM05D007178 ORTHO05D009022 1.1e-10 69.7 42 73.8
Sc05g0006030 Simmondsia chinensis HOM05D007178 ORTHO05D009022 1.1e-10 69.7 42 73.8
SGA_v2.0_scaffold1G00199 Striga asiatica HOM05D007178 ORTHO05D009022 1.1e-10 69.7 42 76.2
TAR460G0007 Trochodendron aralioides HOM05D007178 ORTHO05D009022 1.1e-10 69.7 42 73.8
GSVIVG01021533001 Vitis vinifera HOM05D007178 ORTHO05D009022 1.1e-10 69.7 42 73.8
Cfa000915 Carpinus fangiana HOM05D007178 ORTHO05D009022 1.4e-10 69.3 42 76.2
ClCG01G024800 Citrullus lanatus HOM05D007178 ORTHO05D009022 1.4e-10 69.3 42 76.2
Atru.chr10.1132 Acer truncatum HOM05D007178 ORTHO05D009022 1.8e-10 68.9 42 71.4
CiPaw.10G089700 Carya illinoinensis HOM05D007178 ORTHO05D009022 1.8e-10 68.9 42 73.8
Ciclev10017932m.g Citrus clementina HOM05D007178 ORTHO05D009022 1.8e-10 68.9 42 71.4
unitig_26.g9766 Utricularia gibba HOM05D007178 ORTHO05D009022 1.8e-10 68.9 42 73.8
Dinv21533 Davidia involucrata HOM05D007178 ORTHO05D009022 2.4e-10 68.6 42 71.4
HanXRQChr07g0199391 Helianthus annuus HOM05D007178 ORTHO05D009022 2.4e-10 68.6 42 73.8
TWI09G0402 Tripterygium wilfordii HOM05D007178 ORTHO05D009022 2.4e-10 68.6 42 71.4
CANSAT35G0370 Cannabis sativa HOM05D007178 ORTHO05D009022 3.1e-10 68.2 42 71.4
DCAR_027898 Daucus carota HOM05D007178 ORTHO05D009022 3.1e-10 68.2 42 71.4
Duzib160G0207 Durio zibethinus HOM05D007178 ORTHO05D009022 3.1e-10 68.2 42 73.8
Lj2g0013550 Lotus japonicus HOM05D007178 ORTHO05D009022 3.1e-10 68.2 42 69.0
Hund17773 Selenicereus undatus HOM05D007178 ORTHO05D009022 3.1e-10 68.2 42 73.8
ECA234G3634 Erigeron canadensis HOM05D007178 ORTHO05D009022 4.0e-10 67.8 42 71.4
Nn3g20425 Nelumbo nucifera HOM05D007178 ORTHO05D009022 4.0e-10 67.8 42 71.4
Peaxi162Scf00045g02430 Petunia axillaris HOM05D007178 ORTHO05D009022 4.0e-10 67.8 40 72.5
Sed0021444 Sechium edule HOM05D007178 ORTHO05D009022 4.0e-10 67.8 42 73.8
vmacro05543 Vaccinium macrocarpon HOM05D007178 ORTHO05D009022 5.3e-10 67.4 38 78.9
Lsat_1_v5_gn_4_29580 Lactuca sativa HOM05D007178 ORTHO05D009022 6.9e-10 67.0 42 71.4
Manes.17G073200 Manihot esculenta HOM05D007178 ORTHO05D009022 6.9e-10 67.0 42 69.0
Gohir.A06G196500 Gossypium hirsutum HOM05D007178 ORTHO05D009022 9.0e-10 66.6 42 71.4
Gohir.A10G042700 Gossypium hirsutum HOM05D007178 ORTHO05D009022 9.0e-10 66.6 42 69.0
Gohir.D06G204000 Gossypium hirsutum HOM05D007178 ORTHO05D009022 9.0e-10 66.6 42 71.4
Gohir.D10G043700 Gossypium hirsutum HOM05D007178 ORTHO05D009022 9.0e-10 66.6 42 69.0
Gorai.010G238000 Gossypium raimondii HOM05D007178 ORTHO05D009022 9.0e-10 66.6 42 71.4
Gorai.011G046500 Gossypium raimondii HOM05D007178 ORTHO05D009022 9.0e-10 66.6 42 69.0
Solyc08g022120.3 Solanum lycopersicum HOM05D007178 ORTHO05D009022 9.0e-10 66.6 40 70.0
Sopen08g007660 Solanum pennellii HOM05D007178 ORTHO05D009022 9.0e-10 66.6 40 70.0
EL10Ac8g19636 Beta vulgaris HOM05D007178 ORTHO05D009022 1.2e-09 66.2 42 71.4
Cpa.g.sc17.33 Carica papaya HOM05D007178 ORTHO05D009022 1.2e-09 66.2 42 69.0
Cc00_g05770 Coffea canephora HOM05D007178 ORTHO05D009022 1.2e-09 66.2 42 69.0
Glyma.07G128900 Glycine max HOM05D007178 ORTHO05D009022 1.2e-09 66.2 42 69.0
Lalb_Chr22g0349731 Lupinus albus HOM05D007178 ORTHO05D009022 1.2e-09 66.2 42 69.0
Psat1g049440 Pisum sativum HOM05D007178 ORTHO05D009022 1.2e-09 66.2 42 69.0
TWI73G0655 Tripterygium wilfordii HOM05D007178 ORTHO05D009022 1.2e-09 66.2 42 66.7
Phvul.004G171100 Phaseolus vulgaris HOM05D007178 ORTHO05D009022 1.5e-09 65.9 42 66.7
THA.LOC104798400 Tarenaya hassleriana HOM05D007178 ORTHO05D009022 1.5e-09 65.9 42 69.0
arahy.Tifrunner.gnm1.ann1.KYL6KL Arachis hypogaea HOM05D007178 ORTHO05D009022 2.0e-09 65.5 39 71.8
Glyma.01G003100 Glycine max HOM05D007178 ORTHO05D009022 2.0e-09 65.5 42 66.7
Nitab4.5_0000315g0010 Nicotiana tabacum HOM05D007178 ORTHO05D009022 2.0e-09 65.5 40 70.0
Nitab4.5_0005655g0060 Nicotiana tabacum HOM05D007178 ORTHO05D009022 2.0e-09 65.5 40 70.0
MBI18_g11238_MAGBIO Magnolia biondii HOM05D007178 ORTHO05D009022 3.4e-09 64.7 42 64.3
CDE11G0374 Ceratophyllum demersum HOM05D007178 ORTHO05D009022 5.8e-09 63.9 42 61.9
Thhalv10026632m.g Eutrema salsugineum HOM05D007178 ORTHO05D009022 5.8e-09 63.9 42 64.3
PSO541G3638 Papaver somniferum HOM05D007178 ORTHO05D009022 5.8e-09 63.9 42 66.7
PSO675G4358 Papaver somniferum HOM05D007178 ORTHO05D009022 5.8e-09 63.9 42 66.7
TPR.G35503 Trifolium pratense HOM05D007178 ORTHO05D009022 7.6e-09 63.5 42 64.3
Aqoxy4G00077 Aquilegia oxysepala HOM05D007178 ORTHO05D009022 1.0e-08 63.2 40 70.0
Lalb_Chr14g0375331 Lupinus albus HOM05D007178 ORTHO05D009022 1.0e-08 63.2 42 64.3
Ah.14g086320 Amaranthus hybridus HOM05D007178 ORTHO05D009022 1.3e-08 62.8 42 69.0
BcaC09g51519 Brassica carinata HOM05D007178 ORTHO05D009022 1.3e-08 62.8 42 64.3
C01p12290 Brassica napus HOM05D007178 ORTHO05D009022 1.3e-08 62.8 42 64.3
Os09g0569450 Oryza sativa ssp. japonica HOM05D007178 ORTHO05D009022 1.3e-08 62.8 42 66.7
AL7G35950 Arabidopsis lyrata HOM05D007178 ORTHO05D009022 1.7e-08 62.4 42 64.3
PGR083G2020 Punica granatum HOM05D007178 ORTHO05D009022 1.7e-08 62.4 42 64.3
BcaNung00005 Brassica carinata HOM05D007178 ORTHO05D009022 2.2e-08 62.0 42 61.9
A03p51260 Brassica napus HOM05D007178 ORTHO05D009022 2.9e-08 61.6 42 59.5
BraA03t14208Z Brassica rapa HOM05D007178 ORTHO05D009022 2.9e-08 61.6 42 59.5
A01p10340 Brassica napus HOM05D007178 ORTHO05D009022 3.8e-08 61.2 42 61.9
BolC1t01205H Brassica oleracea HOM05D007178 ORTHO05D009022 3.8e-08 61.2 42 61.9
BraA01t00981Z Brassica rapa HOM05D007178 ORTHO05D009022 3.8e-08 61.2 42 61.9
Sp7g15630 Schrenkiella parvula HOM05D007178 ORTHO05D009022 3.8e-08 61.2 42 61.9
AT4G18400 Arabidopsis thaliana HOM05D007178 ORTHO05D009022 4.9e-08 60.8 42 61.9
Carub.0007s2286 Capsella rubella HOM05D007178 ORTHO05D009022 4.9e-08 60.8 42 61.9
CARHR225220 Cardamine hirsuta HOM05D007178 ORTHO05D009022 4.9e-08 60.8 42 61.9
Potri.004G133260 Populus trichocarpa HOM05D007178 ORTHO05D009022 4.9e-08 60.8 42 64.3
Medtr8g006645 Medicago truncatula HOM05D007178 ORTHO05D009022 6.5e-08 60.5 42 61.9
BcaC06g30589 Brassica carinata HOM05D007178 ORTHO05D009022 1.1e-07 59.7 42 66.7
HPP92_014792 Vanilla planifolia HOM05D007178 ORTHO05D009022 1.1e-07 59.7 42 61.9
Zm00001eb307790 Zea mays HOM05D007178 ORTHO05D009022 1.9e-07 58.9 42 59.5
CDE05G0627 Ceratophyllum demersum HOM05D007178 ORTHO05D009022 4.2e-07 57.8 42 57.1
Gohir.D07G160820 Gossypium hirsutum HOM05D007178 ORTHO05D009022 1.6e-06 55.8 32 78.1
Aa31LG6G1110 Aethionema arabicum HOM05D007178 ORTHO05D009022 2.1e-06 55.5 35 71.4
Ah.13g071740 Amaranthus hybridus HOM05D007178 ORTHO05D009022 4.6e-06 54.3 42 61.9


User provided reference genes

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