Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN14G2207 Fragaria x ananassa HOM05D004655 ORTHO05D005567 3.0e-157 558.5 293 100.0
FvH4_6g44420 Fragaria vesca HOM05D004655 ORTHO05D005567 1.5e-156 556.2 293 99.7
FAN02G1121 Fragaria x ananassa HOM05D004655 ORTHO05D005567 4.8e-155 551.2 294 99.0
FAN02G3511 Fragaria x ananassa HOM05D004655 ORTHO05D005567 1.4e-154 549.7 294 99.0
FAN05G4368 Fragaria x ananassa HOM05D004655 ORTHO05D005567 1.4e-154 549.7 294 99.0
RcHm_v2.0_Chr2g0161411 Rosa chinensis HOM05D004655 ORTHO05D005567 3.5e-150 535.0 293 94.9
MD09G1097200 Malus domestica HOM05D004655 ORTHO05D005567 3.4e-129 465.3 291 82.8
FAN09G1462 Fragaria x ananassa HOM05D004655 ORTHO05D005567 2.6e-124 449.1 294 84.4
Prupe.3G228700 Prunus persica HOM05D004655 ORTHO05D005567 4.8e-123 444.9 285 81.1
QL08p036998 Quercus lobata HOM05D004655 ORTHO05D005567 1.1e-122 443.7 296 76.7
Manes.13G152400 Manihot esculenta HOM05D004655 ORTHO05D005567 7.0e-122 441.0 294 76.2
CiPaw.04G122300 Carya illinoinensis HOM05D004655 ORTHO05D005567 2.0e-121 439.5 298 77.5
MD17G1085500 Malus domestica HOM05D004655 ORTHO05D005567 5.9e-121 438.0 291 78.4
Duzib132G0437 Durio zibethinus HOM05D004655 ORTHO05D005567 1.0e-120 437.2 297 77.8
Duzib132G0466 Durio zibethinus HOM05D004655 ORTHO05D005567 1.0e-120 437.2 297 77.8
MELO3C018772.2 Cucumis melo HOM05D004655 ORTHO05D005567 2.9e-120 435.6 291 75.9
Lj3g0013026 Lotus japonicus HOM05D004655 ORTHO05D005567 5.0e-120 434.9 296 76.4
COL.COLO4_13659 Corchorus olitorius HOM05D004655 ORTHO05D005567 6.5e-120 434.5 298 77.9
Thecc.02G170400 Theobroma cacao HOM05D004655 ORTHO05D005567 1.4e-119 433.3 297 77.4
ClCG00G002920 Citrullus lanatus HOM05D004655 ORTHO05D005567 7.2e-119 431.0 291 75.9
ClCG02G001360 Citrullus lanatus HOM05D004655 ORTHO05D005567 7.2e-119 431.0 291 75.9
Lalb_Chr22g0356311 Lupinus albus HOM05D004655 ORTHO05D005567 9.4e-119 430.6 285 78.6
Psat7g149680 Pisum sativum HOM05D004655 ORTHO05D005567 1.2e-118 430.3 286 80.8
CSS0017466 Camellia sinensis var. sinensis HOM05D004655 ORTHO05D005567 2.7e-118 429.1 293 76.5
Dinv13829 Davidia involucrata HOM05D004655 ORTHO05D005567 2.7e-118 429.1 292 77.4
CsaV3_7G004070 Cucumis sativus L. HOM05D004655 ORTHO05D005567 3.6e-118 428.7 291 75.3
Cfa014528 Carpinus fangiana HOM05D004655 ORTHO05D005567 1.4e-117 426.8 293 77.5
Gorai.012G132100 Gossypium raimondii HOM05D004655 ORTHO05D005567 1.4e-117 426.8 294 76.2
Actinidia12466 Actinidia chinensis HOM05D004655 ORTHO05D005567 1.8e-117 426.4 296 74.7
Ciclev10016098m.g Citrus clementina HOM05D004655 ORTHO05D005567 3.0e-117 425.6 293 75.1
Gohir.D04G146200 Gossypium hirsutum HOM05D004655 ORTHO05D005567 3.9e-117 425.2 294 75.9
Glyma.12G200200 Glycine max HOM05D004655 ORTHO05D005567 5.2e-117 424.9 292 75.7
arahy.Tifrunner.gnm1.ann1.S2JPPU Arachis hypogaea HOM05D004655 ORTHO05D005567 6.7e-117 424.5 300 75.3
arahy.Tifrunner.gnm1.ann1.YR7HYJ Arachis hypogaea HOM05D004655 ORTHO05D005567 6.7e-117 424.5 298 75.5
Glyma.13G302100 Glycine max HOM05D004655 ORTHO05D005567 6.7e-117 424.5 292 75.7
Gohir.A04G106100 Gossypium hirsutum HOM05D004655 ORTHO05D005567 6.7e-117 424.5 294 75.9
VMungo1080G0396 Vigna mungo HOM05D004655 ORTHO05D005567 8.8e-117 424.1 292 75.3
arahy.Tifrunner.gnm1.ann1.XZ54ZU Arachis hypogaea HOM05D004655 ORTHO05D005567 2.6e-116 422.5 298 74.8
Medtr4g045980 Medicago truncatula HOM05D004655 ORTHO05D005567 3.3e-116 422.2 296 76.7
Potri.019G117900 Populus trichocarpa HOM05D004655 ORTHO05D005567 3.3e-116 422.2 298 73.8
arahy.Tifrunner.gnm1.ann1.81TW8H Arachis hypogaea HOM05D004655 ORTHO05D005567 4.4e-116 421.8 300 74.7
CANSAT64G1156 Cannabis sativa HOM05D004655 ORTHO05D005567 4.4e-116 421.8 293 75.4
TAR629G1482 Trochodendron aralioides HOM05D004655 ORTHO05D005567 7.4e-116 421.0 296 73.0
TWI36G0222 Tripterygium wilfordii HOM05D004655 ORTHO05D005567 1.7e-115 419.9 299 73.2
Actinidia18535 Actinidia chinensis HOM05D004655 ORTHO05D005567 3.7e-115 418.7 291 73.9
Lj3g0017119 Lotus japonicus HOM05D004655 ORTHO05D005567 3.7e-115 418.7 294 75.5
Glyma.06G299100 Glycine max HOM05D004655 ORTHO05D005567 1.1e-114 417.2 282 77.3
Atru.chr6.3084 Acer truncatum HOM05D004655 ORTHO05D005567 5.3e-114 414.8 297 73.7
Phvul.005G108600 Phaseolus vulgaris HOM05D004655 ORTHO05D005567 9.1e-114 414.1 292 74.7
CSS0020863 Camellia sinensis var. sinensis HOM05D004655 ORTHO05D005567 1.2e-113 413.7 297 73.7
CiPaw.03G168300 Carya illinoinensis HOM05D004655 ORTHO05D005567 2.0e-113 412.9 293 74.4
Sed0025834 Sechium edule HOM05D004655 ORTHO05D005567 2.0e-113 412.9 291 72.5
TPR.G21652 Trifolium pratense HOM05D004655 ORTHO05D005567 2.6e-113 412.5 288 74.0
CSS0004933 Camellia sinensis var. sinensis HOM05D004655 ORTHO05D005567 3.5e-113 412.1 298 73.5
Ca_01544_v3 Cicer arietinum L. HOM05D004655 ORTHO05D005567 3.5e-113 412.1 292 72.9
VMungo1127G2245 Vigna mungo HOM05D004655 ORTHO05D005567 4.5e-113 411.8 284 78.5
TWI75G0473 Tripterygium wilfordii HOM05D004655 ORTHO05D005567 7.7e-113 411.0 299 71.9
Potri.013G148400 Populus trichocarpa HOM05D004655 ORTHO05D005567 1.3e-112 410.2 300 72.0
TAR627G0814 Trochodendron aralioides HOM05D004655 ORTHO05D005567 1.7e-112 409.8 291 73.2
Glyma.12G106600 Glycine max HOM05D004655 ORTHO05D005567 2.2e-112 409.5 280 77.1
TPR.G18073 Trifolium pratense HOM05D004655 ORTHO05D005567 2.2e-112 409.5 299 71.9
Haze_13070 Corylus avellana HOM05D004655 ORTHO05D005567 2.9e-112 409.1 353 65.2
PGR042G1100 Punica granatum HOM05D004655 ORTHO05D005567 2.9e-112 409.1 294 73.8
Eucgr.A01774 Eucalyptus grandis HOM05D004655 ORTHO05D005567 3.8e-112 408.7 306 71.9
Lalb_Chr01g0005451 Lupinus albus HOM05D004655 ORTHO05D005567 3.8e-112 408.7 299 73.2
Phvul.011G110700 Phaseolus vulgaris HOM05D004655 ORTHO05D005567 1.5e-111 406.8 282 77.3
EL10Ac9g20731 Beta vulgaris HOM05D004655 ORTHO05D005567 2.5e-111 406.0 286 74.1
MSTRG.14176 Avicennia marina HOM05D004655 ORTHO05D005567 9.4e-111 404.1 294 72.1
Nn1g03859 Nelumbo nucifera HOM05D004655 ORTHO05D005567 9.4e-111 404.1 297 72.7
PSO675G0243 Papaver somniferum HOM05D004655 ORTHO05D005567 2.1e-110 402.9 300 72.0
Lsat_1_v5_gn_3_40720 Lactuca sativa HOM05D004655 ORTHO05D005567 3.6e-110 402.1 310 70.3
vmacro12257 Vaccinium macrocarpon HOM05D004655 ORTHO05D005567 4.7e-110 401.7 294 72.1
MBI18_g27693_MAGBIO Magnolia biondii HOM05D004655 ORTHO05D005567 8.0e-110 401.0 298 71.5
Psat5g269080 Pisum sativum HOM05D004655 ORTHO05D005567 1.0e-109 400.6 276 74.3
Migut.H01014 Erythranthe guttata HOM05D004655 ORTHO05D005567 1.4e-109 400.2 293 72.4
Hma1.2p1_0662F.1_g198360 Hydrangea macrophylla HOM05D004655 ORTHO05D005567 1.8e-109 399.8 291 73.9
PGSC0003DMG400018330 Solanum tuberosum HOM05D004655 ORTHO05D005567 2.0e-108 396.4 293 71.7
GSVIVG01029990001 Vitis vinifera HOM05D004655 ORTHO05D005567 2.0e-108 396.4 241 81.3
PSO541G1277 Papaver somniferum HOM05D004655 ORTHO05D005567 2.6e-108 396.0 292 72.3
Sopen07g028730 Solanum pennellii HOM05D004655 ORTHO05D005567 2.6e-108 396.0 293 71.7
HanXRQChr06g0171121 Helianthus annuus HOM05D004655 ORTHO05D005567 5.7e-108 394.8 289 74.0
Aa31LG8G17800 Aethionema arabicum HOM05D004655 ORTHO05D005567 9.7e-108 394.0 291 72.9
Ah.01g005210 Amaranthus hybridus HOM05D004655 ORTHO05D005567 1.3e-107 393.7 293 71.7
Ca_20707_v3 Cicer arietinum L. HOM05D004655 ORTHO05D005567 2.8e-107 392.5 271 76.8
Sabra19G0118300 Salix brachista HOM05D004655 ORTHO05D005567 2.8e-107 392.5 346 62.4
Sabra19G0135300 Salix brachista HOM05D004655 ORTHO05D005567 3.7e-107 392.1 343 63.0
Medtr2g089795 Medicago truncatula HOM05D004655 ORTHO05D005567 4.8e-107 391.7 287 71.4
Aqoxy1G03905 Aquilegia oxysepala HOM05D004655 ORTHO05D005567 8.3e-107 391.0 288 71.5
DCAR_012973 Daucus carota HOM05D004655 ORTHO05D005567 8.3e-107 391.0 298 69.1
Sp3g34160 Schrenkiella parvula HOM05D004655 ORTHO05D005567 8.3e-107 391.0 290 72.1
Hma1.2p1_0565F.1_g179650 Hydrangea macrophylla HOM05D004655 ORTHO05D005567 1.1e-106 390.6 297 72.4
C08p41940 Brassica napus HOM05D004655 ORTHO05D005567 1.8e-106 389.8 290 72.8
Nn1g06795 Nelumbo nucifera HOM05D004655 ORTHO05D005567 1.8e-106 389.8 280 72.5
Nn1g06798 Nelumbo nucifera HOM05D004655 ORTHO05D005567 1.8e-106 389.8 280 72.5
AUR62037119 Chenopodium quinoa HOM05D004655 ORTHO05D005567 2.4e-106 389.4 289 72.3
BcaB08g34948 Brassica carinata HOM05D004655 ORTHO05D005567 3.1e-106 389.0 292 72.3
THA.LOC104804073 Tarenaya hassleriana HOM05D004655 ORTHO05D005567 4.1e-106 388.7 290 72.1
A09p58650 Brassica napus HOM05D004655 ORTHO05D005567 5.3e-106 388.3 294 71.8
BraA09t41251Z Brassica rapa HOM05D004655 ORTHO05D005567 5.3e-106 388.3 294 71.8
BcaC07g41186 Brassica carinata HOM05D004655 ORTHO05D005567 1.6e-105 386.7 290 72.1
BolC8t51757H Brassica oleracea HOM05D004655 ORTHO05D005567 1.6e-105 386.7 290 72.1
Thhalv10002049m.g Eutrema salsugineum HOM05D004655 ORTHO05D005567 1.6e-105 386.7 292 72.6
AUR62032763 Chenopodium quinoa HOM05D004655 ORTHO05D005567 2.0e-105 386.3 286 72.7
Sc12g0002690 Simmondsia chinensis HOM05D004655 ORTHO05D005567 2.7e-105 386.0 286 73.1
ATR0693G119 Amborella trichopoda HOM05D004655 ORTHO05D005567 7.7e-105 384.4 292 67.5
Lj1C737G5 Lonicera japonica HOM05D004655 ORTHO05D005567 1.7e-104 383.3 325 65.2
Carub.0003s3556 Capsella rubella HOM05D004655 ORTHO05D005567 2.2e-104 382.9 290 70.7
CARHR111640 Cardamine hirsuta HOM05D004655 ORTHO05D005567 2.9e-104 382.5 288 70.1
Cc05_g06070 Coffea canephora HOM05D004655 ORTHO05D005567 3.8e-104 382.1 305 67.2
Rhsim06G0153100 Rhododendron simsii HOM05D004655 ORTHO05D005567 5.0e-104 381.7 317 67.2
AT2G20890 Arabidopsis thaliana HOM05D004655 ORTHO05D005567 5.5e-103 378.3 289 69.6
AL3G54160 Arabidopsis lyrata HOM05D004655 ORTHO05D005567 6.1e-102 374.8 288 68.1
unitig_21.g20001 Utricularia gibba HOM05D004655 ORTHO05D005567 2.0e-100 369.8 289 66.1
ECA246G4617 Erigeron canadensis HOM05D004655 ORTHO05D005567 2.6e-100 369.4 296 68.9
SGA_v2.0_scaffold70G23458 Striga asiatica HOM05D004655 ORTHO05D005567 4.4e-100 368.6 269 73.2
Sabra13G0119700 Salix brachista HOM05D004655 ORTHO05D005567 9.8e-100 367.5 299 67.9
DCAR_019200 Daucus carota HOM05D004655 ORTHO05D005567 4.8e-99 365.2 234 77.4
Os07g0558500 Oryza sativa ssp. japonica HOM05D004655 ORTHO05D005567 7.0e-98 361.3 291 66.0
Duzib052G1220 Durio zibethinus HOM05D004655 ORTHO05D005567 9.1e-98 360.9 291 68.4
SGA_v2.0_scaffold34G13911 Striga asiatica HOM05D004655 ORTHO05D005567 1.6e-97 360.1 351 59.8
HPP92_012362 Vanilla planifolia HOM05D004655 ORTHO05D005567 1.0e-96 357.5 289 66.4
Zm00001eb324100 Zea mays HOM05D004655 ORTHO05D005567 8.6e-96 354.4 281 65.8
SalBow7G2858 Salvia bowleyana HOM05D004655 ORTHO05D005567 8.0e-94 347.8 266 68.0
SalBow1G2826 Salvia bowleyana HOM05D004655 ORTHO05D005567 1.0e-93 347.4 227 75.8
Peaxi162Scf00007g02516 Petunia axillaris HOM05D004655 ORTHO05D005567 8.9e-93 344.4 327 60.2
Duzib248G0290 Durio zibethinus HOM05D004655 ORTHO05D005567 6.3e-91 338.2 198 86.9
CAN.G508.2 Capsicum annuum HOM05D004655 ORTHO05D005567 3.5e-89 332.4 226 73.5
Nitab4.5_0000769g0070 Nicotiana tabacum HOM05D004655 ORTHO05D005567 1.0e-88 330.9 292 63.0
Lj8C118T0 Lonicera japonica HOM05D004655 ORTHO05D005567 1.6e-86 323.6 233 73.0
Pp3c19_17570 Physcomitrium patens HOM05D004655 ORTHO05D005567 1.4e-85 320.5 235 68.1
Ah.01g014420 Amaranthus hybridus HOM05D004655 ORTHO05D005567 1.4e-82 310.5 229 71.6
Sc12g0003940 Simmondsia chinensis HOM05D004655 ORTHO05D005567 2.0e-81 306.6 231 70.1
AagrBONN_evm.TU.Sc2ySwM_344.251 Anthoceros agrestis HOM05D004655 ORTHO05D005567 1.7e-80 303.5 262 61.8
Nitab4.5_0001019g0090 Nicotiana tabacum HOM05D004655 ORTHO05D005567 3.0e-80 302.8 221 70.6
Pp3c21_14540 Physcomitrium patens HOM05D004655 ORTHO05D005567 3.9e-80 302.4 225 66.7
Mapoly0010s0156 Marchantia polymorpha HOM05D004655 ORTHO05D005567 5.0e-80 302.0 284 59.9
SMO266G0053 Selaginella moellendorffii HOM05D004655 ORTHO05D005567 5.6e-79 298.5 201 72.6
Zm00001eb106830 Zea mays HOM05D004655 ORTHO05D005567 5.2e-77 292.0 192 77.1
AUR62037125 Chenopodium quinoa HOM05D001718 ORTHO05D008006 9.8e-76 287.7 263 61.6
AUR62032764 Chenopodium quinoa HOM05D001718 ORTHO05D008006 2.4e-74 283.1 265 61.1
Cpa.g.sc34.80 Carica papaya HOM05D004655 ORTHO05D005567 6.4e-67 258.5 196 68.4
Dinv15502 Davidia involucrata HOM05D004655 ORTHO05D005567 6.6e-64 248.4 185 70.3
PRCOL_00003577 Prasinoderma coloniale HOM05D004655 ORTHO05D005567 1.3e-59 234.2 220 53.6
CBR_g78876 Chara braunii HOM05D004655 ORTHO05D005567 2.7e-57 226.5 234 51.7
Cre13.g562850 Chlamydomonas reinhardtii HOM05D004655 ORTHO05D005567 3.8e-51 206.1 237 47.7
CDE05G0437 Ceratophyllum demersum HOM05D004655 ORTHO05D005567 2.4e-50 203.4 150 67.3
CDE05G0433 Ceratophyllum demersum HOM05D004655 ORTHO05D005567 2.1e-49 200.3 180 58.3
MCO07G428 Micromonas commoda HOM05D004655 ORTHO05D005567 1.2e-41 174.5 219 45.2
SEGI_32441 Sequoiadendron giganteum HOM05D004655 ORTHO05D005567 1.3e-40 171.0 161 59.0
Sed0002097 Sechium edule HOM05D004655 ORTHO05D005567 9.7e-23 111.7 285 34.7
Cpa.g.sc34.79 Carica papaya HOM05D004655 ORTHO05D005567 1.5e-20 104.4 68 80.9
ClCG02G001370 Citrullus lanatus HOM05D004655 ORTHO05D005567 4.5e-20 102.8 63 84.1
VMungo0720G1089 Vigna mungo HOM05D004655 ORTHO05D005567 5.9e-20 102.4 59 86.4
Sabra19G0118700 Salix brachista HOM05D004655 ORTHO05D005567 1.7e-14 84.3 119 45.4
Oeu029438.1 Olea europaea HOM05D004655 ORTHO05D005567 2.2e-14 84.0 123 43.1
Hma1.2p1_0479F.1_g161430 Hydrangea macrophylla HOM05D001315 ORTHO05D001618 2.7e-09 67.0 56 64.3
Oeu037167.1 Olea europaea HOM05D004655 ORTHO05D005567 6.3e-06 55.8 28 85.7


User provided reference genes

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