Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN14G2196 Fragaria x ananassa HOM05D000704 ORTHO05D000526 2.1e-32 141.7 69 100.0
RcHm_v2.0_Chr2g0175801 Rosa chinensis HOM05D000704 ORTHO05D000526 7.6e-19 96.7 48 100.0
FvH4_6g53720 Fragaria vesca HOM05D000704 ORTHO05D000526 2.7e-16 88.2 52 86.5
FAN05G0540 Fragaria x ananassa HOM05D018167 ORTHO05D020748 3.9e-15 84.3 44 95.5
MD17G1000900 Malus domestica HOM05D000704 ORTHO05D000526 8.7e-15 83.2 47 87.2
Prupe.3G307500 Prunus persica HOM05D000704 ORTHO05D000526 8.7e-15 83.2 47 87.2
Potri.001G328701 Populus trichocarpa HOM05D000704 ORTHO05D000526 4.3e-14 80.9 47 83.0
CANSAT64G0174 Cannabis sativa HOM05D000704 ORTHO05D000526 5.6e-14 80.5 48 81.2
DCAR_021797 Daucus carota HOM05D000704 ORTHO05D000526 9.6e-14 79.7 48 77.1
MD09G1009500 Malus domestica HOM05D000704 ORTHO05D000526 2.1e-13 78.6 47 80.9
Potri.017G064400 Populus trichocarpa HOM05D000704 ORTHO05D000526 3.6e-13 77.8 47 78.7
SalBow7G2973 Salvia bowleyana HOM05D000704 ORTHO05D000526 4.8e-13 77.4 63 60.3
CAN.G473.108 Capsicum annuum HOM05D000704 ORTHO05D000526 6.2e-13 77.0 63 58.7
GSVIVG01033073001 Vitis vinifera HOM05D000704 ORTHO05D000526 6.2e-13 77.0 63 57.1
HanXRQChr09g0256251 Helianthus annuus HOM05D000704 ORTHO05D000526 8.1e-13 76.6 48 75.0
Manes.17G102466 Manihot esculenta HOM05D000704 ORTHO05D000526 8.1e-13 76.6 47 78.7
Hma1.2p1_1057F.1_g252760 Hydrangea macrophylla HOM05D000704 ORTHO05D000526 1.1e-12 76.3 63 60.3
Aa31LG9G730 Aethionema arabicum HOM05D000704 ORTHO05D000526 1.4e-12 75.9 63 60.3
Cpa.g.sc171.3 Carica papaya HOM05D000704 ORTHO05D000526 1.4e-12 75.9 48 75.0
CiPaw.03G056600 Carya illinoinensis HOM05D000704 ORTHO05D000526 1.4e-12 75.9 63 60.3
vmacro05967 Vaccinium macrocarpon HOM05D000704 ORTHO05D000526 1.8e-12 75.5 63 58.7
Manes.15G162200 Manihot esculenta HOM05D000704 ORTHO05D000526 2.4e-12 75.1 47 76.6
Sopen02g038840 Solanum pennellii HOM05D000704 ORTHO05D000526 2.4e-12 75.1 50 70.0
CARHR213420 Cardamine hirsuta HOM05D000704 ORTHO05D000526 3.1e-12 74.7 63 60.3
AT5G40960 Arabidopsis thaliana HOM05D000704 ORTHO05D000526 4.0e-12 74.3 63 60.3
BcaB02g07919 Brassica carinata HOM05D000704 ORTHO05D000526 4.0e-12 74.3 63 60.3
BcaB06g27578 Brassica carinata HOM05D000704 ORTHO05D000526 4.0e-12 74.3 63 60.3
A04p14020 Brassica napus HOM05D000704 ORTHO05D000526 4.0e-12 74.3 63 60.3
BraA04t17064Z Brassica rapa HOM05D000704 ORTHO05D000526 4.0e-12 74.3 63 60.3
Migut.K01471 Erythranthe guttata HOM05D000704 ORTHO05D000526 4.0e-12 74.3 63 55.6
Thhalv10028018m.g Eutrema salsugineum HOM05D000704 ORTHO05D000526 4.0e-12 74.3 63 60.3
HanXRQChr17g0550041 Helianthus annuus HOM05D000704 ORTHO05D000526 4.0e-12 74.3 48 72.9
BcaC02g08987 Brassica carinata HOM05D000704 ORTHO05D000526 5.3e-12 73.9 63 58.7
C04p48050 Brassica napus HOM05D000704 ORTHO05D000526 5.3e-12 73.9 63 58.7
BolC4t26397H Brassica oleracea HOM05D000704 ORTHO05D000526 5.3e-12 73.9 63 58.7
CiPaw.04G037300 Carya illinoinensis HOM05D000704 ORTHO05D000526 5.3e-12 73.9 48 72.9
THA.LOC109116343 Tarenaya hassleriana HOM05D000704 ORTHO05D000526 9.0e-12 73.2 48 70.8
Nn4g22283 Nelumbo nucifera HOM05D000704 ORTHO05D000526 1.2e-11 72.8 52 67.3
TWI32G1081 Tripterygium wilfordii HOM05D000704 ORTHO05D000526 1.2e-11 72.8 47 74.5
Carub.0007s3454 Capsella rubella HOM05D000704 ORTHO05D000526 1.5e-11 72.4 63 57.1
Lsat_1_v5_gn_4_185000 Lactuca sativa HOM05D000704 ORTHO05D000526 2.0e-11 72.0 47 72.3
Duzib147G0170 Durio zibethinus HOM05D000704 ORTHO05D000526 2.6e-11 71.6 47 72.3
Glyma.19G092800 Glycine max HOM05D000704 ORTHO05D000526 3.4e-11 71.2 48 68.8
Thecc.04G038700 Theobroma cacao HOM05D000704 ORTHO05D000526 3.4e-11 71.2 47 72.3
Eucgr.I01639 Eucalyptus grandis HOM05D000704 ORTHO05D000526 4.5e-11 70.9 63 55.6
Oeu005117.1 Olea europaea HOM05D000704 ORTHO05D000526 4.5e-11 70.9 63 55.6
TAR374G0712 Trochodendron aralioides HOM05D000660 ORTHO05D000766 4.5e-11 70.9 47 68.1
BolC6t37145H Brassica oleracea HOM05D000704 ORTHO05D032838 5.8e-11 70.5 63 58.7
Gohir.D04G076200 Gossypium hirsutum HOM05D000704 ORTHO05D000526 5.8e-11 70.5 47 66.0
Gorai.012G085900 Gossypium raimondii HOM05D000704 ORTHO05D000526 5.8e-11 70.5 47 66.0
Hma1.2p1_0525F.1_g172490 Hydrangea macrophylla HOM05D000704 ORTHO05D000526 5.8e-11 70.5 63 55.6
Lalb_Chr00c01g0403671 Lupinus albus HOM05D000704 ORTHO05D000526 7.6e-11 70.1 48 66.7
PSO827G0001 Papaver somniferum HOM05D000704 ORTHO05D000526 7.6e-11 70.1 48 64.6
Dinv33330 Davidia involucrata HOM05D000704 ORTHO05D000526 9.9e-11 69.7 73 47.9
Glyma.16G055100 Glycine max HOM05D000704 ORTHO05D000526 9.9e-11 69.7 48 66.7
Gohir.A05G337600 Gossypium hirsutum HOM05D000704 ORTHO05D000526 9.9e-11 69.7 47 63.8
Atru.chr9.1219 Acer truncatum HOM05D000704 ORTHO05D000526 1.3e-10 69.3 48 70.8
ClCG11G009450 Citrullus lanatus HOM05D000704 ORTHO05D000526 1.3e-10 69.3 63 55.6
Ciclev10018377m.g Citrus clementina HOM05D000704 ORTHO05D000526 2.2e-10 68.6 48 68.8
Lsat_1_v5_gn_0_2501 Lactuca sativa HOM05D000704 ORTHO05D000526 2.9e-10 68.2 48 66.7
AUR62003445 Chenopodium quinoa HOM05D000704 ORTHO05D000526 3.8e-10 67.8 63 50.8
PGR142G1701 Punica granatum HOM05D000704 ORTHO05D000526 3.8e-10 67.8 63 52.4
PSO017G1949 Papaver somniferum HOM05D000704 ORTHO05D000526 4.9e-10 67.4 48 62.5
Phvul.001G092400 Phaseolus vulgaris HOM05D000704 ORTHO05D000526 4.9e-10 67.4 63 50.8
TPR.G20595 Trifolium pratense HOM05D000704 ORTHO05D000526 8.4e-10 66.6 63 49.2
Duzib187G0296 Durio zibethinus HOM05D000704 ORTHO05D000526 2.4e-09 65.1 47 66.0
Gohir.A07G229500 Gossypium hirsutum HOM05D000704 ORTHO05D000526 2.4e-09 65.1 47 63.8
Gohir.D07G236700 Gossypium hirsutum HOM05D000704 ORTHO05D000526 2.4e-09 65.1 47 63.8
Medtr7g028945 Medicago truncatula HOM05D000704 ORTHO05D000526 3.2e-09 64.7 63 47.6
HPP92_021570 Vanilla planifolia HOM05D000704 ORTHO05D000526 3.2e-09 64.7 47 63.8
Migut.F00055 Erythranthe guttata HOM05D000704 ORTHO05D000526 4.2e-09 64.3 63 46.0
CAN.G1525.9 Capsicum annuum HOM05D000704 ORTHO05D000526 5.4e-09 63.9 47 66.0
Os01g0849500 Oryza sativa ssp. japonica HOM05D000704 ORTHO05D000526 7.1e-09 63.5 47 63.8
PGSC0003DMG400030200 Solanum tuberosum HOM05D000704 ORTHO05D000526 2.7e-08 61.6 62 54.8
Hund04281 Selenicereus undatus HOM05D000704 ORTHO05D000526 3.5e-08 61.2 39 74.4
Zm00001eb147930 Zea mays HOM05D000704 ORTHO05D000526 3.0e-07 58.2 47 59.6
Zm00001eb282270 Zea mays HOM05D000704 ORTHO05D000526 3.0e-07 58.2 47 59.6
CsaV3_2G034040 Cucumis sativus L. HOM05D000704 ORTHO05D000526 8.7e-07 56.6 59 47.5
Hma1.2p1_0014F.1_g009280 Hydrangea macrophylla HOM05D000704 ORTHO05D000526 1.1e-06 56.2 59 45.8
Mapoly0039s0057 Marchantia polymorpha HOM05D000704 ORTHO05D000526 1.1e-06 56.2 47 57.4
FvH4_6g53740 Fragaria vesca HOM05D000704 ORTHO05D000526 1.9e-06 55.5 59 47.5
FAN02G0276 Fragaria x ananassa HOM05D000704 ORTHO05D000526 1.9e-06 55.5 59 47.5
FAN05G4317 Fragaria x ananassa HOM05D000704 ORTHO05D000526 1.9e-06 55.5 59 47.5
FAN09G0020 Fragaria x ananassa HOM05D000704 ORTHO05D000526 1.9e-06 55.5 59 47.5
FAN09G3174 Fragaria x ananassa HOM05D000704 ORTHO05D000526 1.9e-06 55.5 59 47.5
FAN14G5354 Fragaria x ananassa HOM05D000704 ORTHO05D000526 1.9e-06 55.5 59 47.5
Glyma.11G252100 Glycine max HOM05D000704 ORTHO05D000526 1.9e-06 55.5 59 47.5
Nitab4.5_0005161g0140 Nicotiana tabacum HOM05D000704 ORTHO05D000526 1.9e-06 55.5 48 52.1
Zm00001eb075930 Zea mays HOM05D000704 ORTHO05D000526 1.9e-06 55.5 47 57.4
MELO3C008177.2 Cucumis melo HOM05D000704 ORTHO05D000526 2.5e-06 55.1 59 45.8
Manes.17G102200 Manihot esculenta HOM05D000704 ORTHO05D000526 2.5e-06 55.1 59 45.8
Pp3c7_18300 Physcomitrium patens HOM05D000704 ORTHO05D000526 2.5e-06 55.1 47 55.3
CiPaw.06G104300 Carya illinoinensis HOM05D000704 ORTHO05D000526 3.3e-06 54.7 59 49.2
Hma1.2p1_1057F.1_g252740 Hydrangea macrophylla HOM05D000704 ORTHO05D000526 3.3e-06 54.7 48 52.1
Lalb_Chr12g0202251 Lupinus albus HOM05D000704 ORTHO05D000526 3.3e-06 54.7 59 47.5
Pp3c1_3610 Physcomitrium patens HOM05D000704 ORTHO05D000526 4.3e-06 54.3 47 53.2
DCAR_015109 Daucus carota HOM05D000704 ORTHO05D000526 5.6e-06 53.9 59 44.1
Phvul.001G092100 Phaseolus vulgaris HOM05D000704 ORTHO05D000526 5.6e-06 53.9 63 42.9
PGR083G0028 Punica granatum HOM05D000704 ORTHO05D000526 5.6e-06 53.9 59 42.4
Nn3g16429 Nelumbo nucifera HOM05D000704 ORTHO05D000526 7.4e-06 53.5 59 45.8
Nitab4.5_0000559g0380 Nicotiana tabacum HOM05D000704 ORTHO05D000526 7.4e-06 53.5 48 50.0
Glyma.16G054800 Glycine max HOM05D000704 ORTHO05D000526 9.6e-06 53.1 59 44.1
Glyma.19G093300 Glycine max HOM05D000704 ORTHO05D000526 9.6e-06 53.1 59 44.1
Potri.003G170400 Populus trichocarpa HOM05D000704 ORTHO05D000526 9.6e-06 53.1 59 44.1
Zm00001eb003940 Zea mays HOM05D000704 ORTHO05D000526 9.6e-06 53.1 43 60.5


User provided reference genes

Program Settings