Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN14G2174 Fragaria x ananassa HOM05D005512 ORTHO05D006716 3.2e-276 954.5 503 100.0
FvH4_6g18250 Fragaria vesca HOM05D005512 ORTHO05D006716 5.3e-263 910.6 528 93.9
FAN14G2179 Fragaria x ananassa HOM05D005512 ORTHO05D006716 5.2e-258 894.0 492 95.3
FAN09G0635 Fragaria x ananassa HOM05D005512 ORTHO05D006716 3.1e-255 884.8 525 91.6
FAN05G0202 Fragaria x ananassa HOM05D005512 ORTHO05D006716 3.2e-252 874.8 525 89.5
FAN05G5667 Fragaria x ananassa HOM05D005512 ORTHO05D006716 9.7e-249 863.2 556 84.7
FAN02G2015 Fragaria x ananassa HOM05D005512 ORTHO05D006716 1.5e-244 849.4 497 90.7
RcHm_v2.0_Chr3g0472661 Rosa chinensis HOM05D005512 ORTHO05D006716 2.6e-233 812.0 498 86.3
Prupe.7G114400 Prunus persica HOM05D005512 ORTHO05D006716 1.1e-178 630.6 513 70.4
MD12G1022300 Malus domestica HOM05D005512 ORTHO05D006716 9.0e-170 600.9 510 67.1
MD14G1019200 Malus domestica HOM05D005512 ORTHO05D006716 8.2e-155 551.2 483 65.0
QL07p039701 Quercus lobata HOM05D005512 ORTHO05D006716 3.6e-118 429.5 514 53.1
Cfa016575 Carpinus fangiana HOM05D005512 ORTHO05D006716 2.0e-113 413.7 488 54.5
Haze_19571 Corylus avellana HOM05D005512 ORTHO05D006716 1.9e-103 380.6 488 51.8
Dinv21230 Davidia involucrata HOM05D005512 ORTHO05D006716 8.0e-102 375.2 498 48.2
CiPaw.09G010900 Carya illinoinensis HOM05D005512 ORTHO05D006716 2.3e-101 373.6 504 48.6
Potri.006G114600 Populus trichocarpa HOM05D005512 ORTHO05D006716 7.0e-98 362.1 508 48.0
Sabra06G0089500 Salix brachista HOM05D005512 ORTHO05D006716 2.7e-97 360.1 494 47.8
CiPaw.10G007200 Carya illinoinensis HOM05D005512 ORTHO05D006716 3.5e-97 359.8 526 46.6
Ciclev10013541m.g Citrus clementina HOM05D005512 ORTHO05D006716 1.1e-95 354.8 512 46.1
TWI74G0342 Tripterygium wilfordii HOM05D005512 ORTHO05D006716 2.0e-92 344.0 496 45.8
CANSAT80G2511 Cannabis sativa HOM05D005512 ORTHO05D006716 5.8e-92 342.4 499 46.9
Manes.09G059527 Manihot esculenta HOM05D005512 ORTHO05D006716 2.9e-91 340.1 506 46.0
Dinv31662 Davidia involucrata HOM05D005512 ORTHO05D006716 6.4e-91 339.0 503 45.7
TWI53G0330 Tripterygium wilfordii HOM05D005512 ORTHO05D006716 3.1e-85 320.1 496 44.4
Cpa.g.sc5.51 Carica papaya HOM05D005512 ORTHO05D006716 5.2e-85 319.3 522 43.3
Glyma.19G193400 Glycine max HOM05D005512 ORTHO05D006716 3.1e-69 266.9 494 40.3
ClCG10G019160 Citrullus lanatus HOM05D005512 ORTHO05D006716 9.0e-69 265.4 502 40.8
Duzib128G1345 Durio zibethinus HOM05D005512 ORTHO05D006716 5.8e-68 262.7 393 46.1
CsaV3_3G037090 Cucumis sativus L. HOM05D005512 ORTHO05D006716 2.2e-67 260.8 504 40.5
Thecc.05G085400 Theobroma cacao HOM05D005512 ORTHO05D006716 2.2e-67 260.8 394 45.4
MELO3C009455.2 Cucumis melo HOM05D005512 ORTHO05D006716 8.4e-67 258.8 508 40.7
GSVIVG01033811001 Vitis vinifera HOM05D005512 ORTHO05D006716 8.4e-67 258.8 507 40.6
CARHR020060 Cardamine hirsuta HOM05D005512 ORTHO05D006716 4.2e-66 256.5 488 41.0
Lj1g0021236 Lotus japonicus HOM05D005512 ORTHO05D006716 9.3e-66 255.4 489 40.3
Sed0026834 Sechium edule HOM05D005512 ORTHO05D006716 6.7e-64 249.2 501 39.7
Lalb_Chr20g0112081 Lupinus albus HOM05D005512 ORTHO05D006716 1.5e-63 248.1 496 39.1
COL.COLO4_29783 Corchorus olitorius HOM05D005512 ORTHO05D006716 1.6e-62 244.6 397 45.3
AL1G32240 Arabidopsis lyrata HOM05D005512 ORTHO05D006716 3.7e-62 243.4 489 39.7
Gorai.009G405400 Gossypium raimondii HOM05D005512 ORTHO05D006716 6.2e-62 242.7 566 36.4
AT1G19490 Arabidopsis thaliana HOM05D005512 ORTHO05D006716 1.4e-61 241.5 489 39.3
Gohir.D04G102100 Gossypium hirsutum HOM05D005512 ORTHO05D006716 1.8e-61 241.1 566 36.0
Nn6g34983 Nelumbo nucifera HOM05D005512 ORTHO05D006716 1.2e-60 238.4 496 38.5
Gohir.A04G064600 Gossypium hirsutum HOM05D005512 ORTHO05D006716 2.0e-60 237.7 567 35.4
BraA06t24676Z Brassica rapa HOM05D005512 ORTHO05D006716 5.8e-60 236.1 499 40.9
arahy.Tifrunner.gnm1.ann1.EPRD9B Arachis hypogaea HOM05D005512 ORTHO05D006716 1.7e-59 234.6 496 37.5
Sp1g17370 Schrenkiella parvula HOM05D005512 ORTHO05D006716 2.2e-59 234.2 488 39.1
A06p15670 Brassica napus HOM05D005512 ORTHO05D006716 2.9e-59 233.8 499 40.9
Carub.0001s1906 Capsella rubella HOM05D005512 ORTHO05D006716 8.4e-59 232.3 487 40.2
Hma1.2p1_0084F.1_g043460 Hydrangea macrophylla HOM05D005512 ORTHO05D006716 1.1e-58 231.9 516 38.4
Duzib093G0027 Durio zibethinus HOM05D005512 ORTHO05D006716 1.4e-58 231.5 578 36.2
Actinidia10388 Actinidia chinensis HOM05D005512 ORTHO05D006716 9.3e-58 228.8 509 38.1
C05p17910 Brassica napus HOM05D005512 ORTHO05D006716 7.9e-57 225.7 497 40.2
Thhalv10009681m.g Eutrema salsugineum HOM05D005512 ORTHO05D006716 1.0e-56 225.3 496 39.5
Phvul.001G188300 Phaseolus vulgaris HOM05D005512 ORTHO05D006716 1.8e-56 224.6 517 36.6
VMungo1383G0830 Vigna mungo HOM05D005512 ORTHO05D006716 6.7e-56 222.6 371 42.3
Atru.chr8.1592 Acer truncatum HOM05D005512 ORTHO05D006716 8.7e-56 222.2 351 45.6
BcaB03g14441 Brassica carinata HOM05D005512 ORTHO05D006716 5.6e-55 219.5 481 39.7
PGR142G2241 Punica granatum HOM05D005512 ORTHO05D006716 9.6e-55 218.8 535 36.3
arahy.Tifrunner.gnm1.ann1.S7MLB0 Arachis hypogaea HOM05D005512 ORTHO05D006716 3.1e-53 213.8 498 35.7
THA.LOC104804992 Tarenaya hassleriana HOM05D005512 ORTHO05D006716 9.0e-53 212.2 513 36.8
Aqoxy4G02826 Aquilegia oxysepala HOM05D005512 ORTHO05D006716 7.6e-52 209.1 509 37.5
Aa31LG7G4150 Aethionema arabicum HOM05D005512 ORTHO05D006716 1.7e-51 208.0 494 36.6
TPR.G19527 Trifolium pratense HOM05D005512 ORTHO05D006716 6.5e-51 206.1 497 34.6
Medtr7g104190 Medicago truncatula HOM05D005512 ORTHO05D006716 7.9e-49 199.1 498 34.3
Psat3g034880 Pisum sativum HOM05D005512 ORTHO05D006716 2.2e-46 191.0 485 34.2
CSS0012282 Camellia sinensis var. sinensis HOM05D005512 ORTHO05D006716 1.5e-44 184.9 423 36.9
PSO384G3501 Papaver somniferum HOM05D005512 ORTHO05D006716 7.9e-41 172.6 513 32.2
TAR623G0330 Trochodendron aralioides HOM05D005512 ORTHO05D006716 2.3e-40 171.0 260 46.2
Lj3A1000G63 Lonicera japonica HOM05D005512 ORTHO05D006716 3.0e-40 170.6 468 36.1
Actinidia08422 Actinidia chinensis HOM05D005512 ORTHO05D006716 2.8e-38 164.1 486 31.3
Glyma.03G193300 Glycine max HOM05D005512 ORTHO05D006716 3.8e-35 153.7 474 33.3
Oeu056908.1 Olea europaea HOM05D005512 ORTHO05D006716 5.0e-35 153.3 389 34.4
Rhsim03G0078100 Rhododendron simsii HOM05D005512 ORTHO05D006716 6.5e-35 152.9 444 32.4
PSO339G0823 Papaver somniferum HOM05D005512 ORTHO05D006716 4.2e-34 150.2 470 30.9
Cc08_g02550 Coffea canephora HOM05D005512 ORTHO05D006716 7.2e-34 149.4 412 33.5
ECA238G0726 Erigeron canadensis HOM05D000284 ORTHO05D001229 1.6e-33 148.3 499 30.5
Eucgr.K02060 Eucalyptus grandis HOM05D005512 ORTHO05D006716 2.1e-33 147.9 323 34.7
Nitab4.5_0005756g0030 Nicotiana tabacum HOM05D005512 ORTHO05D006716 2.1e-33 147.9 389 34.4
Nitab4.5_0000794g0130 Nicotiana tabacum HOM05D005512 ORTHO05D006716 2.7e-33 147.5 402 34.8
Solyc09g009760.1 Solanum lycopersicum HOM05D005512 ORTHO05D006716 1.8e-32 144.8 395 35.7
Peaxi162Scf00752g00310 Petunia axillaris HOM05D005512 ORTHO05D006716 3.9e-32 143.7 389 35.2
Peaxi162Scf36127g00005 Petunia axillaris HOM05D005512 ORTHO05D006716 3.9e-32 143.7 389 35.2
Nn2g14077 Nelumbo nucifera HOM05D005512 ORTHO05D006716 6.7e-32 142.9 204 47.1
Sopen09g004520 Solanum pennellii HOM05D005512 ORTHO05D006716 6.7e-32 142.9 395 35.9
MBI17_g31309_MAGBIO Magnolia biondii HOM05D005512 ORTHO05D006716 1.4e-29 135.2 489 31.7
AUR62028570 Chenopodium quinoa HOM05D005512 ORTHO05D006716 1.8e-29 134.8 376 34.6
AUR62033525 Chenopodium quinoa HOM05D005512 ORTHO05D006716 2.4e-29 134.4 376 34.3
Lsat_1_v5_gn_2_22561 Lactuca sativa HOM05D005512 ORTHO05D006716 4.1e-29 133.7 330 37.3
CAN.G397.46 Capsicum annuum HOM05D005512 ORTHO05D006716 7.0e-29 132.9 366 35.2
MSTRG.10360 Avicennia marina HOM05D005512 ORTHO05D006716 9.1e-29 132.5 377 31.3
Lj2A133G43 Lonicera japonica HOM05D005512 ORTHO05D006716 3.5e-28 130.6 488 31.6
HanXRQChr16g0518951 Helianthus annuus HOM05D005512 ORTHO05D006716 2.2e-27 127.9 403 33.5
Sc20g0006160 Simmondsia chinensis HOM05D005512 ORTHO05D006716 1.1e-23 115.5 491 29.7
Ca_08983_v3 Cicer arietinum L. HOM05D005512 ORTHO05D006716 3.3e-23 114.0 419 29.4
ATR0820G165 Amborella trichopoda HOM05D005512 ORTHO05D006716 4.4e-23 113.6 333 29.4
Nitab4.5_0011780g0020 Nicotiana tabacum HOM05D005512 ORTHO05D006716 9.7e-23 112.5 381 33.3
Eucgr.K02061 Eucalyptus grandis HOM05D005512 ORTHO05D006716 1.1e-21 109.0 177 45.2
Hund14853 Selenicereus undatus HOM05D005512 ORTHO05D006716 9.1e-21 105.9 351 33.0
CDE08G0293 Ceratophyllum demersum HOM05D005512 ORTHO05D006716 1.6e-20 105.1 224 38.4
CDE06G1506 Ceratophyllum demersum HOM05D000077 ORTHO05D002348 5.9e-20 103.2 367 30.5
DCAR_020766 Daucus carota HOM05D005512 ORTHO05D006716 2.2e-19 101.3 254 37.8
EL10Ac7g16952 Beta vulgaris HOM05D005512 ORTHO05D006716 8.5e-19 99.4 213 39.4
Lsat_1_v5_gn_6_66321 Lactuca sativa HOM05D005512 ORTHO05D006716 8.5e-19 99.4 267 32.6
PGSC0003DMG400028166 Solanum tuberosum HOM05D005512 ORTHO05D006716 1.2e-17 95.5 248 33.1
DCAR_009151 Daucus carota HOM05D005512 ORTHO05D006716 2.1e-17 94.7 303 32.0
Sopen10g032880 Solanum pennellii HOM05D005512 ORTHO05D006716 5.2e-16 90.1 170 38.8
Os11g0154900 Oryza sativa ssp. japonica HOM05D005512 ORTHO05D006716 6.7e-16 89.7 222 34.7
Solyc10g083380.2 Solanum lycopersicum HOM05D005512 ORTHO05D006716 1.5e-15 88.6 170 38.8
QL07p039646 Quercus lobata HOM05D005512 ORTHO05D006716 2.0e-15 88.2 318 30.5
Glyma.17G197300 Glycine max HOM05D005512 ORTHO05D006716 5.7e-15 86.7 145 40.7
HPP92_009043 Vanilla planifolia HOM05D005512 ORTHO05D006716 9.7e-15 85.9 231 32.0
Glyma.19G084800 Glycine max HOM05D005512 ORTHO05D006716 4.8e-14 83.6 145 40.0
Zm00001eb197160 Zea mays HOM05D005512 ORTHO05D006716 3.5e-12 77.4 87 51.7
PGSC0003DMG402008883 Solanum tuberosum HOM05D005512 ORTHO05D006716 7.7e-12 76.3 337 30.0
Atru.chr8.1591 Acer truncatum HOM05D005512 ORTHO05D006716 2.2e-11 74.7 49 73.5
Zm00001eb406920 Zea mays HOM05D005512 ORTHO05D006716 2.9e-11 74.3 90 48.9
SalBow3G2059 Salvia bowleyana HOM05D005512 ORTHO05D006716 3.2e-10 70.9 178 33.7
Pp3c17_11650 Physcomitrium patens HOM05D005512 ORTHO05D006716 7.2e-10 69.7 118 44.9
BcaC05g25849 Brassica carinata HOM05D005512 ORTHO05D006716 4.7e-09 67.0 127 47.2
unitig_22.g5122 Utricularia gibba HOM05D005512 ORTHO05D006716 6.1e-09 66.6 156 37.2
Pp3c14_6250 Physcomitrium patens HOM05D005512 ORTHO05D006716 1.4e-08 65.5 148 37.8
ATR0820G116 Amborella trichopoda HOM05D005512 ORTHO05D006716 1.8e-08 65.1 200 37.0
AagrBONN_evm.TU.Sc2ySwM_117.2312 Anthoceros agrestis HOM05D005512 ORTHO05D006716 2.0e-07 61.6 123 39.0
Oeu040522.1 Olea europaea HOM05D005512 ORTHO05D006716 7.5e-07 59.7 497 25.2
Mapoly0016s0098 Marchantia polymorpha HOM05D005512 ORTHO05D006716 1.3e-06 58.9 117 38.5
SMO351G0354 Selaginella moellendorffii HOM05D005512 ORTHO05D006716 1.7e-06 58.5 79 48.1
Sc07g0005480 Simmondsia chinensis HOM05D005512 ORTHO05D006716 2.8e-06 57.8 172 34.9


User provided reference genes

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