Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN14G1969 Fragaria x ananassa HOM05D004472 ORTHO05D007169 0.0e+00 1092.4 532 100.0
FvH4_6g22330 Fragaria vesca HOM05D004472 ORTHO05D007169 5.1e-256 887.5 451 96.9
FAN02G0232 Fragaria x ananassa HOM05D004472 ORTHO05D007169 4.0e-253 877.9 467 93.1
FAN09G4048 Fragaria x ananassa HOM05D004472 ORTHO05D007169 1.3e-251 872.8 451 95.3
FAN05G5703 Fragaria x ananassa HOM05D004472 ORTHO05D007169 6.9e-245 850.5 451 93.8
RcHm_v2.0_Chr3g0479691 Rosa chinensis HOM05D004472 ORTHO05D007169 4.2e-242 841.3 448 92.6
Prupe.7G076900 Prunus persica HOM05D004472 ORTHO05D007169 1.8e-216 756.1 451 80.7
MD12G1057200 Malus domestica HOM05D004472 ORTHO05D007169 2.0e-212 742.7 451 78.9
GSVIVG01033498001 Vitis vinifera HOM05D004472 ORTHO05D007169 7.7e-212 740.7 448 79.0
MD14G1057800 Malus domestica HOM05D004472 ORTHO05D007169 5.0e-211 738.0 450 78.9
Gohir.A04G055778 Gossypium hirsutum HOM05D004472 ORTHO05D007169 2.7e-204 715.7 447 77.0
CSS0032720 Camellia sinensis var. sinensis HOM05D004472 ORTHO05D007169 3.5e-204 715.3 448 76.8
Manes.08G044600 Manihot esculenta HOM05D004472 ORTHO05D007169 1.3e-203 713.4 453 75.3
Actinidia22035 Actinidia chinensis HOM05D004472 ORTHO05D007169 2.9e-203 712.2 451 76.3
Hma1.2p1_0386F.1_g141865 Hydrangea macrophylla HOM05D004472 ORTHO05D007169 2.9e-203 712.2 451 75.4
Cpa.g.sc85.67 Carica papaya HOM05D004472 ORTHO05D007169 3.8e-203 711.8 447 76.7
QL07p023729 Quercus lobata HOM05D004472 ORTHO05D007169 3.8e-203 711.8 451 75.4
Atru.chr8.1111 Acer truncatum HOM05D004472 ORTHO05D007169 6.5e-203 711.1 448 75.9
Dinv24072 Davidia involucrata HOM05D004472 ORTHO05D007169 6.5e-203 711.1 448 76.8
CANSAT64G0932 Cannabis sativa HOM05D004472 ORTHO05D007169 8.5e-203 710.7 449 77.3
SGA_v2.0_scaffold69G23061 Striga asiatica HOM05D004472 ORTHO05D007169 1.5e-202 709.9 452 75.0
TAR623G1736 Trochodendron aralioides HOM05D004472 ORTHO05D007169 1.5e-202 709.9 449 76.4
COL.COLO4_33983 Corchorus olitorius HOM05D004472 ORTHO05D007169 7.2e-202 707.6 448 75.9
CiPaw.10G026500 Carya illinoinensis HOM05D004472 ORTHO05D007169 9.4e-202 707.2 451 75.2
BcaB06g29226 Brassica carinata HOM05D004472 ORTHO05D007169 2.1e-201 706.1 449 75.1
Gorai.012G101400 Gossypium raimondii HOM05D004472 ORTHO05D007169 2.1e-201 706.1 447 75.8
CSS0031939 Camellia sinensis var. sinensis HOM05D004472 ORTHO05D007169 4.7e-201 704.9 448 75.9
THA.LOC104824475 Tarenaya hassleriana HOM05D004472 ORTHO05D007169 4.7e-201 704.9 450 75.1
arahy.Tifrunner.gnm1.ann1.VM941Y Arachis hypogaea HOM05D004472 ORTHO05D007169 1.4e-200 703.4 448 74.1
Sp4g24330 Schrenkiella parvula HOM05D004472 ORTHO05D007169 1.8e-200 703.0 450 74.9
Gohir.D04G090500 Gossypium hirsutum HOM05D004472 ORTHO05D007169 2.3e-200 702.6 447 75.6
TWI77G0336 Tripterygium wilfordii HOM05D004472 ORTHO05D007169 3.0e-200 702.2 448 74.6
Thhalv10016664m.g Eutrema salsugineum HOM05D004472 ORTHO05D007169 4.0e-200 701.8 450 74.4
Sopen03g016030 Solanum pennellii HOM05D004472 ORTHO05D007169 8.8e-200 700.7 451 75.2
AT2G42120 Arabidopsis thaliana HOM05D004472 ORTHO05D007169 1.2e-199 700.3 447 74.9
Ca_08520_v3 Cicer arietinum L. HOM05D004472 ORTHO05D007169 1.2e-199 700.3 439 75.6
arahy.Tifrunner.gnm1.ann1.W50LA9 Arachis hypogaea HOM05D004472 ORTHO05D007169 2.0e-199 699.5 448 73.7
CAN.G273.20 Capsicum annuum HOM05D004472 ORTHO05D007169 2.0e-199 699.5 450 74.7
A04p32010 Brassica napus HOM05D004472 ORTHO05D007169 4.4e-199 698.4 453 74.8
Potri.016G045800 Populus trichocarpa HOM05D004472 ORTHO05D007169 1.3e-198 696.8 451 74.7
TWI74G0546 Tripterygium wilfordii HOM05D004472 ORTHO05D007169 1.3e-198 696.8 451 74.1
BcaC02g07263 Brassica carinata HOM05D004472 ORTHO05D007169 1.7e-198 696.4 451 75.2
Potri.006G192400 Populus trichocarpa HOM05D004472 ORTHO05D007169 1.7e-198 696.4 451 73.6
CsaV3_3G038830 Cucumis sativus L. HOM05D004472 ORTHO05D007169 2.2e-198 696.0 448 72.8
AL4G40490 Arabidopsis lyrata HOM05D004472 ORTHO05D007169 2.8e-198 695.7 448 74.6
BraA04t18658Z Brassica rapa HOM05D004472 ORTHO05D007169 8.3e-198 694.1 450 74.7
Eucgr.K01838 Eucalyptus grandis HOM05D004472 ORTHO05D007169 5.4e-197 691.4 448 74.1
C04p69510 Brassica napus HOM05D004472 ORTHO05D007169 7.0e-197 691.0 450 74.4
MSTRG.6484 Avicennia marina HOM05D004472 ORTHO05D007169 1.6e-196 689.9 448 73.2
TPR.G18209 Trifolium pratense HOM05D004472 ORTHO05D007169 2.0e-196 689.5 439 74.5
BolC4t28450H Brassica oleracea HOM05D004472 ORTHO05D007169 2.7e-196 689.1 451 74.5
Lalb_Chr15g0079011 Lupinus albus HOM05D004472 ORTHO05D007169 5.9e-196 688.0 447 71.8
Lj1g0006426 Lotus japonicus HOM05D004472 ORTHO05D007169 1.3e-195 686.8 442 73.8
Sabra16G0049800 Salix brachista HOM05D004472 ORTHO05D007169 2.3e-195 686.0 451 73.8
ECA248G2191 Erigeron canadensis HOM05D004472 ORTHO05D007169 2.9e-195 685.6 445 73.3
Aa31LG1G24100 Aethionema arabicum HOM05D004472 ORTHO05D007169 3.8e-195 685.3 454 73.1
Glyma.03G144600 Glycine max HOM05D004472 ORTHO05D007169 3.8e-195 685.3 439 73.8
Sabra06G0147500 Salix brachista HOM05D004472 ORTHO05D007169 8.6e-195 684.1 450 72.2
Sc25g0005090 Simmondsia chinensis HOM05D004472 ORTHO05D007169 1.9e-194 682.9 468 70.7
Glyma.19G147500 Glycine max HOM05D004472 ORTHO05D007169 7.2e-194 681.0 439 72.9
Medtr7g093210 Medicago truncatula HOM05D004472 ORTHO05D007169 9.5e-194 680.6 435 74.7
Carub.0004s2446 Capsella rubella HOM05D004472 ORTHO05D007169 1.2e-193 680.2 448 73.9
Solyc03g063340.3 Solanum lycopersicum HOM05D004472 ORTHO05D007169 1.8e-192 676.4 435 75.4
HanXRQChr13g0390871 Helianthus annuus HOM05D004472 ORTHO05D007169 4.0e-192 675.2 450 72.0
Nn3g18269 Nelumbo nucifera HOM05D004472 ORTHO05D007169 4.0e-192 675.2 446 72.6
Rhsim03G0006000 Rhododendron simsii HOM05D004472 ORTHO05D007169 8.9e-192 674.1 434 74.7
EL10Ac3g06916 Beta vulgaris HOM05D004472 ORTHO05D007169 2.0e-191 672.9 448 71.7
Migut.J01839 Erythranthe guttata HOM05D004472 ORTHO05D007169 2.2e-190 669.5 449 69.7
Phvul.001G143200 Phaseolus vulgaris HOM05D004472 ORTHO05D007169 2.2e-190 669.5 439 72.2
Thecc.05G171300 Theobroma cacao HOM05D004472 ORTHO05D007169 1.1e-189 667.2 403 78.4
Sed0018995 Sechium edule HOM05D004472 ORTHO05D007169 1.8e-189 666.4 448 70.3
Aqoxy1G00476 Aquilegia oxysepala HOM05D004472 ORTHO05D007169 3.2e-189 665.6 450 70.4
Lj2C366G13 Lonicera japonica HOM05D004472 ORTHO05D007169 3.2e-189 665.6 432 74.8
PSO339G4742 Papaver somniferum HOM05D004472 ORTHO05D007169 9.2e-189 664.1 449 71.7
Oeu007762.1 Olea europaea HOM05D004472 ORTHO05D007169 2.7e-188 662.5 441 72.3
PSO384G4825 Papaver somniferum HOM05D004472 ORTHO05D007169 3.9e-187 658.7 449 71.3
PGR142G1378 Punica granatum HOM05D004472 ORTHO05D007169 6.6e-187 657.9 451 70.5
Nitab4.5_0001137g0080 Nicotiana tabacum HOM05D004472 ORTHO05D007169 4.3e-186 655.2 452 71.5
Hund19203 Selenicereus undatus HOM05D004472 ORTHO05D007169 5.6e-186 654.8 441 71.2
Psat3g068520 Pisum sativum HOM05D004472 ORTHO05D007169 2.1e-185 652.9 427 72.4
Lsat_1_v5_gn_5_163440 Lactuca sativa HOM05D004472 ORTHO05D007169 3.6e-185 652.1 440 70.7
Phvul.001G142200 Phaseolus vulgaris HOM05D004472 ORTHO05D007169 5.8e-183 644.8 439 69.5
VMungo1383G3660 Vigna mungo HOM05D004472 ORTHO05D007169 5.4e-181 638.3 425 71.3
DCAR_017009 Daucus carota HOM05D004472 ORTHO05D007169 2.7e-180 636.0 429 69.9
CSS0048424 Camellia sinensis var. sinensis HOM05D004472 ORTHO05D007169 1.9e-178 629.8 462 68.0
vmacro07908 Vaccinium macrocarpon HOM05D004472 ORTHO05D007169 5.6e-178 628.2 467 67.0
Nitab4.5_0007619g0020 Nicotiana tabacum HOM05D004472 ORTHO05D007169 5.2e-176 621.7 432 70.8
Os03g0128500 Oryza sativa ssp. japonica HOM05D004472 ORTHO05D007169 6.8e-176 621.3 439 66.1
Ah.13g075820 Amaranthus hybridus HOM05D004472 ORTHO05D007169 1.4e-173 613.6 408 72.8
Zm00001eb002170 Zea mays HOM05D004472 ORTHO05D007169 1.7e-171 606.7 439 65.1
SEGI_25790 Sequoiadendron giganteum HOM05D004472 ORTHO05D007169 1.1e-170 604.0 451 62.7
HPP92_018591 Vanilla planifolia HOM05D004472 ORTHO05D007169 5.6e-170 601.7 443 64.3
Haze_19988 Corylus avellana HOM05D004472 ORTHO05D007169 4.0e-168 595.5 506 60.7
ClCG10G017520 Citrullus lanatus HOM05D004472 ORTHO05D007169 1.1e-162 577.4 456 63.2
HPP92_006516 Vanilla planifolia HOM05D004472 ORTHO05D007169 3.3e-162 575.9 488 58.4
MELO3C030998.2 Cucumis melo HOM05D004472 ORTHO05D007169 9.6e-162 574.3 540 55.9
PGSC0003DMG400014974 Solanum tuberosum HOM05D004472 ORTHO05D007169 1.8e-160 570.1 369 76.2
CDE04G2547 Ceratophyllum demersum HOM05D004472 ORTHO05D007169 1.2e-159 567.4 407 68.3
SalBow6G5437 Salvia bowleyana HOM05D004472 ORTHO05D007169 2.9e-158 562.8 431 65.4
Haze_19990 Corylus avellana HOM05D004472 ORTHO05D007169 5.4e-157 558.5 496 58.7
Sed0005670 Sechium edule HOM05D004472 ORTHO05D007169 8.7e-155 551.2 374 72.5
ATR0807G137 Amborella trichopoda HOM05D004472 ORTHO05D007169 8.1e-153 544.7 385 67.3
Duzib128G1617 Durio zibethinus HOM05D004472 ORTHO05D007169 1.2e-151 540.8 447 61.5
Pp3c3_28090 Physcomitrium patens HOM05D004472 ORTHO05D007169 1.3e-147 527.3 451 55.9
Mapoly0039s0092 Marchantia polymorpha HOM05D004472 ORTHO05D007169 1.9e-146 523.5 452 56.6
AUR62015368 Chenopodium quinoa HOM05D004472 ORTHO05D007169 3.6e-145 519.2 448 59.8
AagrBONN_evm.TU.Sc2ySwM_362.678 Anthoceros agrestis HOM05D004472 ORTHO05D007169 3.4e-143 512.7 474 54.6
Aqoxy2G02978 Aquilegia oxysepala HOM05D004472 ORTHO05D007169 1.3e-142 510.8 477 56.2
SMO111G0006 Selaginella moellendorffii HOM05D004472 ORTHO05D007169 3.2e-141 506.1 446 54.9
AUR62012036 Chenopodium quinoa HOM05D004472 ORTHO05D007169 3.7e-137 492.7 432 59.3
SMO339G0063 Selaginella moellendorffii HOM05D004472 ORTHO05D007169 3.9e-131 472.6 441 52.4
CBR_g38861 Chara braunii HOM05D004472 ORTHO05D000002 3.7e-129 466.1 452 50.9
CBR_g63079 Chara braunii HOM05D004472 ORTHO05D007169 2.4e-120 436.8 428 51.2
CARHR137180 Cardamine hirsuta HOM05D004472 ORTHO05D007169 2.2e-118 430.3 278 72.7
MBI06_g29494_MAGBIO Magnolia biondii HOM05D004472 ORTHO05D007169 5.1e-107 392.5 256 71.9
Ciclev10012551m.g Citrus clementina HOM05D004472 ORTHO05D007169 6.7e-107 392.1 247 76.5
PRCOL_00001477 Prasinoderma coloniale HOM05D004472 ORTHO05D007169 1.1e-96 358.2 390 44.6
Peaxi162Scf00258g00730 Petunia axillaris HOM05D004472 ORTHO05D007169 1.5e-93 347.8 245 71.8
Hma1.2p1_0386F.1_g141870 Hydrangea macrophylla HOM05D004472 ORTHO05D007169 2.8e-89 333.6 194 77.3
MCO03G010 Micromonas commoda HOM05D004472 ORTHO05D007169 2.8e-89 333.6 457 39.6
Ciclev10012767m.g Citrus clementina HOM05D004472 ORTHO05D007169 1.8e-88 330.9 195 76.4
SHI42174 Sapria himalayana HOM05D004472 ORTHO05D007169 2.4e-88 330.5 295 57.6
Cre08.g374050 Chlamydomonas reinhardtii HOM05D004472 ORTHO05D007169 1.6e-87 327.8 505 36.0
MBI06_g29491_MAGBIO Magnolia biondii HOM05D004472 ORTHO05D007169 6.0e-63 246.1 171 70.2
SHI33668 Sapria himalayana HOM05D004472 ORTHO05D007169 2.2e-57 227.6 192 59.4
SEGI_31079 Sequoiadendron giganteum HOM05D004472 ORTHO05D007169 1.7e-54 218.0 169 60.4
Haze_26548 Corylus avellana HOM05D005705 ORTHO05D007152 3.3e-45 187.2 420 31.0
BcaNung04407 Brassica carinata HOM05D004472 ORTHO05D007169 1.1e-43 182.2 252 43.3
Lsat_1_v5_gn_5_163500 Lactuca sativa HOM05D004472 ORTHO05D007169 3.1e-43 180.6 194 49.5
BcaNung06765 Brassica carinata HOM05D004472 ORTHO05D027254 2.9e-41 174.1 151 58.3
A02p27200 Brassica napus HOM05D004472 ORTHO05D013781 1.1e-40 172.2 108 67.6
BcaC03g16493 Brassica carinata HOM05D004472 ORTHO05D013781 2.4e-40 171.0 195 48.2
Peaxi162Scf00258g00729 Petunia axillaris HOM05D004472 ORTHO05D007169 1.2e-39 168.7 91 79.1
BcaC04g21709 Brassica carinata HOM05D004472 ORTHO05D013781 6.6e-38 162.9 162 53.1
SEGI_39608 Sequoiadendron giganteum HOM05D004472 ORTHO05D007169 6.4e-33 146.4 132 51.5
BcaB02g11100 Brassica carinata HOM05D004472 ORTHO05D027254 2.1e-31 141.4 155 50.3
BolC9t55720H Brassica oleracea HOM05D004472 ORTHO05D013781 1.3e-30 138.7 96 64.6
A09p46770 Brassica napus HOM05D004472 ORTHO05D013781 1.5e-29 135.2 86 67.4
BcaC01g04270 Brassica carinata HOM05D004472 ORTHO05D013781 4.8e-28 130.2 135 52.6
BcaC02g12460 Brassica carinata HOM05D004472 ORTHO05D013781 5.3e-27 126.7 105 60.0
BcaNung00145 Brassica carinata HOM05D004472 ORTHO05D013781 9.0e-27 125.9 126 52.4
SEGI_06501 Sequoiadendron giganteum HOM05D004472 ORTHO05D007169 1.0e-22 112.5 93 55.9
BcaC05g24672 Brassica carinata HOM05D004472 ORTHO05D027254 2.1e-20 104.8 136 45.6
C03p43020 Brassica napus HOM05D004472 ORTHO05D013781 8.4e-17 92.8 66 63.6
CARHR228030 Cardamine hirsuta HOM05D004472 ORTHO05D039758 4.2e-16 90.5 77 64.9
CARHR228020 Cardamine hirsuta HOM05D004472 ORTHO05D007169 2.5e-13 81.3 71 57.7
BcaB02g11125 Brassica carinata HOM05D004472 ORTHO05D039758 1.4e-11 75.5 73 61.6
BcaB06g25539 Brassica carinata HOM05D004472 ORTHO05D094557 2.9e-09 67.8 82 46.3
SMO364G0765 Selaginella moellendorffii HOM05D004472 ORTHO05D007169 6.5e-09 66.6 43 69.8
BraA08t32859Z Brassica rapa HOM05D004472 ORTHO05D027254 4.6e-07 60.5 51 56.9
BolC3t16570H Brassica oleracea HOM05D004472 ORTHO05D013781 1.3e-06 58.9 63 52.4
BraA06t25637Z Brassica rapa HOM05D004472 ORTHO05D013781 1.3e-06 58.9 63 52.4
BraA07t27940Z Brassica rapa HOM05D004472 ORTHO05D013781 1.3e-06 58.9 63 52.4


User provided reference genes

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