Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN14G1966 Fragaria x ananassa HOM05D006219 ORTHO05D007562 2.7e-225 785.0 404 100.0
FAN14G5007 Fragaria x ananassa HOM05D006219 ORTHO05D007562 7.9e-225 783.5 404 99.8
FvH4_6g02280 Fragaria vesca HOM05D006219 ORTHO05D007562 6.5e-219 763.8 444 90.8
FAN05G4153 Fragaria x ananassa HOM05D006219 ORTHO05D007562 2.4e-213 745.3 446 88.6
FAN05G2712 Fragaria x ananassa HOM05D006219 ORTHO05D007562 8.5e-211 736.9 446 87.4
FAN02G1274 Fragaria x ananassa HOM05D006219 ORTHO05D007562 1.4e-210 736.1 446 88.1
FAN09G4845 Fragaria x ananassa HOM05D006219 ORTHO05D007562 1.1e-181 640.2 445 79.1
Prupe.6G348600 Prunus persica HOM05D006219 ORTHO05D007562 2.5e-162 575.9 459 68.0
MD12G1245900 Malus domestica HOM05D006219 ORTHO05D007562 2.6e-151 539.3 454 65.9
Cpa.g.sc162.24 Carica papaya HOM05D006219 ORTHO05D007562 7.1e-141 504.6 450 60.4
Haze_04459 Corylus avellana HOM05D006219 ORTHO05D007562 9.5e-138 494.2 456 60.5
Potri.013G044900 Populus trichocarpa HOM05D006219 ORTHO05D007562 1.2e-137 493.8 453 60.3
CiPaw.07G078300 Carya illinoinensis HOM05D006219 ORTHO05D007562 2.1e-137 493.0 452 60.8
Atru.chr2.897 Acer truncatum HOM05D006219 ORTHO05D007562 2.8e-137 492.7 445 62.2
Manes.09G149100 Manihot esculenta HOM05D006219 ORTHO05D007562 1.2e-135 487.3 451 60.5
Thecc.05G275300 Theobroma cacao HOM05D006219 ORTHO05D007562 1.5e-135 486.9 449 60.8
Cfa006329 Carpinus fangiana HOM05D006219 ORTHO05D007562 4.4e-135 485.3 453 59.8
QL08p015782 Quercus lobata HOM05D006219 ORTHO05D007562 5.4e-133 478.4 461 58.6
QL03p031869 Quercus lobata HOM05D006219 ORTHO05D007562 9.2e-133 477.6 461 58.6
TWI36G0216 Tripterygium wilfordii HOM05D006219 ORTHO05D007562 4.6e-132 475.3 432 61.3
Ca_10007_v3 Cicer arietinum L. HOM05D006219 ORTHO05D007562 6.6e-131 471.5 445 58.2
Duzib128G1627 Durio zibethinus HOM05D006219 ORTHO05D007562 8.6e-131 471.1 454 57.0
CANSAT54G2996 Cannabis sativa HOM05D006219 ORTHO05D007562 1.9e-130 469.9 452 57.7
Glyma.10G166900 Glycine max HOM05D006219 ORTHO05D007562 3.3e-130 469.2 447 58.4
Gohir.D13G107000 Gossypium hirsutum HOM05D006219 ORTHO05D007562 3.3e-130 469.2 440 58.4
Phvul.L001763 Phaseolus vulgaris HOM05D006219 ORTHO05D007562 7.3e-130 468.0 446 57.6
RcHm_v2.0_Chr3g0450031 Rosa chinensis HOM05D006219 ORTHO05D007562 1.1e-128 464.2 327 76.8
Gorai.013G120100 Gossypium raimondii HOM05D006219 ORTHO05D007562 2.4e-128 463.0 449 57.5
Sabra13G0041300 Salix brachista HOM05D006219 ORTHO05D007562 2.4e-128 463.0 449 57.2
CsaV3_1G045560 Cucumis sativus L. HOM05D006219 ORTHO05D007562 6.9e-128 461.5 452 58.0
PGR004G0430 Punica granatum HOM05D006219 ORTHO05D007562 1.2e-127 460.7 445 56.6
MELO3C024664.2 Cucumis melo HOM05D006219 ORTHO05D007562 5.8e-127 458.4 436 58.9
Gohir.A13G103800 Gossypium hirsutum HOM05D006219 ORTHO05D007562 7.6e-127 458.0 449 57.2
Lalb_Chr06g0168341 Lupinus albus HOM05D006219 ORTHO05D007562 9.9e-127 457.6 411 59.9
Lj2C39T18 Lonicera japonica HOM05D006219 ORTHO05D007562 3.8e-126 455.7 432 59.3
TAR633G0272 Trochodendron aralioides HOM05D006219 ORTHO05D007562 4.9e-126 455.3 432 58.3
Lj5g0004576 Lotus japonicus HOM05D006219 ORTHO05D007562 8.4e-126 454.5 434 56.9
ClCG06G009410 Citrullus lanatus HOM05D006219 ORTHO05D007562 1.4e-125 453.8 458 57.4
CSS0036761 Camellia sinensis var. sinensis HOM05D006219 ORTHO05D007562 1.9e-125 453.4 391 60.6
VMungo0720G3050 Vigna mungo HOM05D006219 ORTHO05D007562 1.0e-123 447.6 447 55.0
Lsat_1_v5_gn_2_107721 Lactuca sativa HOM05D006219 ORTHO05D007562 3.1e-120 436.0 454 54.8
Aqoxy5G00261 Aquilegia oxysepala HOM05D006219 ORTHO05D007562 4.0e-120 435.6 435 55.9
Medtr1g079870 Medicago truncatula HOM05D006219 ORTHO05D007562 2.0e-119 433.3 440 54.8
Dinv06988 Davidia involucrata HOM05D006219 ORTHO05D007562 2.6e-119 433.0 437 57.0
Sed0012882 Sechium edule HOM05D006219 ORTHO05D007562 5.8e-119 431.8 423 56.7
HanXRQChr14g0458931 Helianthus annuus HOM05D006219 ORTHO05D007562 5.4e-117 425.2 467 54.0
DCAR_030973 Daucus carota HOM05D006219 ORTHO05D007562 7.4e-114 414.8 437 52.6
PSO210G1007 Papaver somniferum HOM05D006219 ORTHO05D007562 9.6e-114 414.5 450 52.4
PSO832G3978 Papaver somniferum HOM05D006219 ORTHO05D007562 8.1e-113 411.4 449 51.7
CARHR185150 Cardamine hirsuta HOM05D006219 ORTHO05D007562 1.4e-112 410.6 447 53.0
Sp2g20170 Schrenkiella parvula HOM05D006219 ORTHO05D007562 3.4e-111 406.0 449 51.7
THA.LOC104799246 Tarenaya hassleriana HOM05D006219 ORTHO05D007562 3.4e-111 406.0 458 53.1
Thhalv10004236m.g Eutrema salsugineum HOM05D006219 ORTHO05D007562 7.6e-111 404.8 449 52.3
BraA06t26711Z Brassica rapa HOM05D006219 ORTHO05D007562 1.7e-110 403.7 451 53.0
BcaNung01728 Brassica carinata HOM05D006219 ORTHO05D007562 2.2e-110 403.3 447 52.3
A06p37950 Brassica napus HOM05D006219 ORTHO05D007562 2.2e-110 403.3 451 53.0
AL6G40560 Arabidopsis lyrata HOM05D006219 ORTHO05D007562 2.9e-110 402.9 447 52.3
Sc06g0004060 Simmondsia chinensis HOM05D006219 ORTHO05D007562 3.8e-110 402.5 432 53.2
C07p40330 Brassica napus HOM05D006219 ORTHO05D007562 6.4e-110 401.7 451 53.0
CAN.G582.15 Capsicum annuum HOM05D006219 ORTHO05D007562 6.4e-110 401.7 455 52.1
BcaNung02093 Brassica carinata HOM05D006219 ORTHO05D007562 1.9e-109 400.2 451 52.8
BolC7t44567H Brassica oleracea HOM05D006219 ORTHO05D007562 1.9e-109 400.2 451 52.8
ECA238G2300 Erigeron canadensis HOM05D006219 ORTHO05D007562 1.9e-109 400.2 467 51.2
Actinidia06785 Actinidia chinensis HOM05D006219 ORTHO05D007562 3.2e-109 399.4 445 53.9
DCAR_002178 Daucus carota HOM05D006219 ORTHO05D007562 4.2e-109 399.1 384 57.6
PGSC0003DMG400028668 Solanum tuberosum HOM05D006219 ORTHO05D007562 4.2e-109 399.1 458 51.3
Aa31LG5G14970 Aethionema arabicum HOM05D006219 ORTHO05D007562 2.1e-108 396.7 451 51.4
CARHR078740 Cardamine hirsuta HOM05D006219 ORTHO05D007562 7.9e-108 394.8 457 51.0
Aa31LG11G8710 Aethionema arabicum HOM05D006219 ORTHO05D007562 1.0e-107 394.4 451 50.8
Oeu029038.1 Olea europaea HOM05D006219 ORTHO05D007562 3.9e-107 392.5 445 52.8
Thhalv10020727m.g Eutrema salsugineum HOM05D006219 ORTHO05D007562 5.1e-107 392.1 455 49.9
AT5G28500 Arabidopsis thaliana HOM05D006219 ORTHO05D007562 1.9e-106 390.2 447 51.7
Sopen11g002000 Solanum pennellii HOM05D006219 ORTHO05D007562 1.9e-106 390.2 457 50.3
Sp3g03390 Schrenkiella parvula HOM05D006219 ORTHO05D007562 2.5e-106 389.8 455 49.0
Solyc11g006060.2 Solanum lycopersicum HOM05D006219 ORTHO05D007562 7.4e-106 388.3 446 51.1
Rhsim05G0175300 Rhododendron simsii HOM05D006219 ORTHO05D007562 2.1e-105 386.7 455 52.5
BcaB04g21366 Brassica carinata HOM05D006219 ORTHO05D007562 3.7e-105 386.0 448 50.7
BcaC09g47795 Brassica carinata HOM05D006219 ORTHO05D007562 4.0e-104 382.5 454 49.1
Peaxi162Scf00120g00021 Petunia axillaris HOM05D006219 ORTHO05D007562 6.9e-104 381.7 463 48.6
AT3G04550 Arabidopsis thaliana HOM05D006219 ORTHO05D007562 1.2e-103 380.9 455 49.9
BolC1t05743H Brassica oleracea HOM05D006219 ORTHO05D007562 1.2e-103 380.9 459 49.2
BraA01t04521Z Brassica rapa HOM05D006219 ORTHO05D007562 4.9e-102 375.6 452 49.3
Carub.0003s0370 Capsella rubella HOM05D006219 ORTHO05D007562 8.4e-102 374.8 461 48.6
Carub.0006s2578 Capsella rubella HOM05D006219 ORTHO05D007562 2.5e-101 373.2 394 53.0
HanXRQChr07g0201901 Helianthus annuus HOM05D006219 ORTHO05D007562 9.3e-101 371.3 442 48.9
A01p40850 Brassica napus HOM05D006219 ORTHO05D007562 4.6e-100 369.0 453 48.8
BNapus_Darmor_BZH_scaffold_78p00860 Brassica napus HOM05D006219 ORTHO05D007562 4.6e-100 369.0 453 48.8
AL3G14570 Arabidopsis lyrata HOM05D006219 ORTHO05D007562 3.0e-99 366.3 457 49.0
Psat6g143080 Pisum sativum HOM05D006219 ORTHO05D007562 4.3e-98 362.5 343 55.4
CDE05G0955 Ceratophyllum demersum HOM05D006219 ORTHO05D007562 7.4e-98 361.7 390 51.8
SalBow3G3408 Salvia bowleyana HOM05D006219 ORTHO05D007562 2.8e-97 359.8 460 49.6
AUR62037607 Chenopodium quinoa HOM05D006219 ORTHO05D007562 6.3e-97 358.6 432 47.2
Nn1g02711 Nelumbo nucifera HOM05D006219 ORTHO05D007562 1.2e-95 354.4 289 64.7
Nitab4.5_0000856g0150 Nicotiana tabacum HOM05D006219 ORTHO05D007562 7.6e-95 351.7 472 46.0
Nitab4.5_0010345g0010 Nicotiana tabacum HOM05D006219 ORTHO05D007562 2.2e-94 350.1 469 45.8
unitig_748.g8683 Utricularia gibba HOM05D006219 ORTHO05D007562 7.9e-92 341.7 395 50.6
Ah.06g191950 Amaranthus hybridus HOM05D006219 ORTHO05D007562 3.9e-91 339.3 460 45.7
EL10Ac4g09057 Beta vulgaris HOM05D006219 ORTHO05D007562 5.1e-91 339.0 377 49.9
vmacro20002 Vaccinium macrocarpon HOM05D006219 ORTHO05D007562 3.1e-88 329.7 343 56.3
Hma1.2p1_1227F.1_g268570 Hydrangea macrophylla HOM05D006219 ORTHO05D007562 5.3e-88 328.9 310 60.0
CDE08G1514 Ceratophyllum demersum HOM05D006219 ORTHO05D007562 2.0e-87 327.0 411 47.4
Migut.F00810 Erythranthe guttata HOM05D006219 ORTHO05D007562 2.0e-87 327.0 461 46.2
HPP92_025973 Vanilla planifolia HOM05D006219 ORTHO05D007562 6.5e-86 322.0 416 46.6
AUR62004874 Chenopodium quinoa HOM05D006219 ORTHO05D007562 1.1e-85 321.2 344 50.9
TPR.G10266 Trifolium pratense HOM05D006219 ORTHO05D007562 4.4e-82 309.3 417 45.3
ATR0680G103 Amborella trichopoda HOM05D006219 ORTHO05D007562 3.4e-79 299.7 454 44.5
SGA_v2.0_scaffold210G42065 Striga asiatica HOM05D006219 ORTHO05D007562 3.7e-73 279.6 322 53.4
Ciclev10027647m.g Citrus clementina HOM05D006219 ORTHO05D007562 4.7e-68 262.7 226 62.4
MD04G1228600 Malus domestica HOM05D006219 ORTHO05D007562 8.0e-68 261.9 227 63.0
Glyma.20G222200 Glycine max HOM05D006219 ORTHO05D007562 8.2e-65 251.9 250 56.8
Os10g0445600 Oryza sativa ssp. japonica HOM05D006219 ORTHO05D007562 2.4e-64 250.4 447 38.7
MBI18_g37358_MAGBIO Magnolia biondii HOM05D006219 ORTHO05D007562 4.1e-64 249.6 354 44.1
Eucgr.H04253 Eucalyptus grandis HOM05D006219 ORTHO05D007562 8.5e-62 241.9 310 50.0
Lalb_Chr18g0044051 Lupinus albus HOM05D006219 ORTHO05D007562 7.2e-61 238.8 213 57.7
Zm00001eb066000 Zea mays HOM05D006219 ORTHO05D007562 9.4e-61 238.4 388 39.9
SEGI_10874 Sequoiadendron giganteum HOM05D006219 ORTHO05D007562 2.7e-60 236.9 393 38.9
MBI18_g32212_MAGBIO Magnolia biondii HOM05D006219 ORTHO05D007562 5.5e-53 212.6 453 39.3
Mapoly0001s0431 Marchantia polymorpha HOM05D006219 ORTHO05D007562 2.8e-49 200.3 410 34.9
Pp3c18_4320 Physcomitrium patens HOM05D006219 ORTHO05D007562 2.8e-49 200.3 394 36.8
AagrBONN_evm.TU.Sc2ySwM_117.503 Anthoceros agrestis HOM05D006219 ORTHO05D007562 1.2e-47 194.9 392 35.7
CBR_g29314 Chara braunii HOM05D006219 ORTHO05D007562 3.7e-41 173.3 262 43.9
AagrBONN_evm.TU.Sc2ySwM_228.3126 Anthoceros agrestis HOM05D006219 ORTHO05D007562 4.9e-25 119.8 225 36.4
Cpa.g.sc162.21 Carica papaya HOM05D000369 ORTHO05D007562 2.4e-24 117.5 97 60.8
Cre06.g308450 Chlamydomonas reinhardtii HOM05D006219 ORTHO05D007562 1.1e-21 108.6 228 36.4
SMO137G0122 Selaginella moellendorffii HOM05D006219 ORTHO05D007562 4.7e-20 103.2 172 37.2
Glyma.15G246700 Glycine max HOM05D001461 ORTHO05D005534 1.7e-17 94.7 75 61.3
Pp3c16_6440 Physcomitrium patens HOM05D006219 ORTHO05D007562 2.3e-14 84.3 205 33.2
Mapoly4350s0001 Marchantia polymorpha HOM05D006219 ORTHO05D007562 1.6e-12 78.2 185 31.4
MCO04G553 Micromonas commoda HOM05D006219 ORTHO05D007562 2.1e-12 77.8 185 29.7
PRCOL_00003529 Prasinoderma coloniale HOM05D006219 ORTHO05D007562 4.7e-12 76.6 243 28.4
TAR362G0073 Trochodendron aralioides HOM05D001652 ORTHO05D001768 5.1e-06 56.6 76 39.5


User provided reference genes

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