Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN14G1946 Fragaria x ananassa HOM05D004845 ORTHO05D005957 0.0e+00 2219.9 1229 100.0
FvH4_6g32970 Fragaria vesca HOM05D004845 ORTHO05D005957 0.0e+00 2189.8 1230 98.8
FAN02G0586 Fragaria x ananassa HOM05D004845 ORTHO05D005957 0.0e+00 2106.6 1232 95.4
FAN09G4600 Fragaria x ananassa HOM05D004845 ORTHO05D005957 0.0e+00 2088.5 1232 95.1
FAN05G2503 Fragaria x ananassa HOM05D004845 ORTHO05D005957 0.0e+00 2008.0 1382 84.3
RcHm_v2.0_Chr2g0142521 Rosa chinensis HOM05D004845 ORTHO05D005957 0.0e+00 1885.2 1240 87.5
Prupe.3G052500 Prunus persica HOM05D004845 ORTHO05D005957 0.0e+00 1360.5 1252 66.9
MD09G1196000 Malus domestica HOM05D004845 ORTHO05D005957 0.0e+00 1305.8 1246 65.8
MD17G1176700 Malus domestica HOM05D004845 ORTHO05D005957 0.0e+00 1197.2 1248 62.2
QL05p015844 Quercus lobata HOM05D004845 ORTHO05D005957 0.0e+00 1144.4 1282 59.8
Cfa003605 Carpinus fangiana HOM05D004845 ORTHO05D005957 5.8e-303 1044.6 1197 58.4
CiPaw.02G142000 Carya illinoinensis HOM05D004845 ORTHO05D005957 8.1e-297 1024.2 1260 56.7
Dinv30397 Davidia involucrata HOM05D004845 ORTHO05D005957 2.4e-293 1012.7 1257 54.9
CANSAT56G3316 Cannabis sativa HOM05D004845 ORTHO05D005957 1.2e-287 993.8 1200 55.9
Dinv37932 Davidia involucrata HOM05D004845 ORTHO05D005957 6.0e-276 954.9 1261 53.8
Duzib160G0801 Durio zibethinus HOM05D004845 ORTHO05D005957 1.9e-274 949.9 1265 52.3
Atru.chr1.3636 Acer truncatum HOM05D004845 ORTHO05D005957 1.2e-271 940.6 1212 53.7
Thecc.06G108000 Theobroma cacao HOM05D004845 ORTHO05D005957 1.7e-270 936.8 1277 52.4
Potri.003G033100 Populus trichocarpa HOM05D004845 ORTHO05D005957 1.9e-261 906.7 1252 51.2
Manes.04G137600 Manihot esculenta HOM05D004845 ORTHO05D005957 2.7e-260 902.9 1202 52.9
MELO3C013040.2 Cucumis melo HOM05D004845 ORTHO05D005957 8.7e-259 897.9 1259 51.8
ClCG07G013620 Citrullus lanatus HOM05D004845 ORTHO05D005957 2.1e-257 893.3 1260 52.2
Glyma.07G012400 Glycine max HOM05D004845 ORTHO05D005957 3.1e-256 889.4 1254 51.0
Glyma.08G196100 Glycine max HOM05D004845 ORTHO05D005957 1.7e-254 883.6 1255 50.6
CsaV3_3G044010 Cucumis sativus L. HOM05D004845 ORTHO05D005957 1.6e-252 877.1 1256 51.7
Sed0014548 Sechium edule HOM05D004845 ORTHO05D005957 2.7e-252 876.3 1261 51.4
arahy.Tifrunner.gnm1.ann1.JSQ5P9 Arachis hypogaea HOM05D004845 ORTHO05D005957 6.0e-252 875.2 1256 50.2
Sabra03G0019000 Salix brachista HOM05D004845 ORTHO05D005957 5.7e-250 868.6 1242 51.1
Duzib235G0635 Durio zibethinus HOM05D004845 ORTHO05D005957 1.1e-245 854.4 1255 49.6
TAR629G3185 Trochodendron aralioides HOM05D004845 ORTHO05D005957 1.2e-244 850.9 1293 50.5
arahy.Tifrunner.gnm1.ann1.7F0ZFP Arachis hypogaea HOM05D004845 ORTHO05D005957 1.6e-244 850.5 1257 49.5
vmacro18819 Vaccinium macrocarpon HOM05D004845 ORTHO05D005957 2.7e-244 849.7 1264 49.5
Gohir.A05G133700 Gossypium hirsutum HOM05D004845 ORTHO05D005957 3.7e-241 839.3 1266 49.9
Rhsim08G0231600 Rhododendron simsii HOM05D004845 ORTHO05D005957 6.9e-240 835.1 1233 50.0
Gohir.D05G135700 Gossypium hirsutum HOM05D004845 ORTHO05D005957 3.4e-239 832.8 1266 49.5
Medtr8g015620 Medicago truncatula HOM05D004845 ORTHO05D005957 4.5e-239 832.4 1230 49.2
Gorai.009G139700 Gossypium raimondii HOM05D004845 ORTHO05D005957 1.3e-238 830.9 1264 49.6
Ca_23299_v3 Cicer arietinum L. HOM05D004845 ORTHO05D005957 1.7e-238 830.5 1251 49.4
Lj3g0006882 Lotus japonicus HOM05D004845 ORTHO05D005957 1.7e-238 830.5 1248 48.7
Ciclev10024729m.g Citrus clementina HOM05D004845 ORTHO05D005957 2.9e-238 829.7 1234 50.8
Manes.11G028800 Manihot esculenta HOM05D004845 ORTHO05D005957 1.2e-236 824.3 1278 49.2
Nn1g08771 Nelumbo nucifera HOM05D004845 ORTHO05D005957 3.9e-235 819.3 1248 49.9
GSVIVG01016889001 Vitis vinifera HOM05D004845 ORTHO05D005957 2.4e-232 810.1 1261 46.6
Sed0023831 Sechium edule HOM05D004845 ORTHO05D005957 5.3e-232 808.9 1260 48.8
Phvul.010G141800 Phaseolus vulgaris HOM05D004845 ORTHO05D005957 7.7e-223 778.5 1259 47.7
Lj3g0020048 Lotus japonicus HOM05D004845 ORTHO05D005957 8.5e-222 775.0 1241 47.6
TWI31G1049 Tripterygium wilfordii HOM05D004845 ORTHO05D005957 2.1e-220 770.4 1303 47.7
VMungo0331G0639 Vigna mungo HOM05D004845 ORTHO05D005957 5.2e-219 765.8 1257 47.7
Cpa.g.sc131.35 Carica papaya HOM05D004845 ORTHO05D005957 2.8e-217 760.0 1164 49.7
Lalb_Chr04g0263091 Lupinus albus HOM05D004845 ORTHO05D005957 6.5e-214 748.8 1257 47.1
Cc04_g02180 Coffea canephora HOM05D004845 ORTHO05D005957 1.4e-203 714.5 1274 45.7
MSTRG.22604 Avicennia marina HOM05D004845 ORTHO05D005957 2.3e-203 713.8 1258 45.5
COL.COLO4_30609 Corchorus olitorius HOM05D004845 ORTHO05D005957 5.4e-200 702.6 1269 41.3
DCAR_026375 Daucus carota HOM05D004845 ORTHO05D005957 3.5e-199 699.9 1197 47.0
Peaxi162Scf00038g01322 Petunia axillaris HOM05D004845 ORTHO05D005957 6.8e-195 685.6 1283 44.4
PGR102G0505 Punica granatum HOM05D004845 ORTHO05D005957 1.3e-193 681.4 1256 46.1
THA.LOC104817934 Tarenaya hassleriana HOM05D004845 ORTHO05D005957 9.2e-192 675.2 1302 41.4
Actinidia32134 Actinidia chinensis HOM05D004845 ORTHO05D005957 1.5e-189 667.9 1071 48.4
Sopen03g040190 Solanum pennellii HOM05D004845 ORTHO05D005957 1.6e-188 664.5 1272 44.7
Migut.I01002 Erythranthe guttata HOM05D004845 ORTHO05D005957 1.8e-187 661.0 1264 44.0
Solyc03g121380.3 Solanum lycopersicum HOM05D004845 ORTHO05D005957 2.6e-186 657.1 1278 44.3
Sc12g0009860 Simmondsia chinensis HOM05D004845 ORTHO05D005957 7.3e-181 639.0 1262 44.8
CAN.G1668.10 Capsicum annuum HOM05D004845 ORTHO05D005957 2.0e-178 630.9 1185 45.3
THA.LOC104810560 Tarenaya hassleriana HOM05D004845 ORTHO05D005957 4.1e-176 623.2 1294 40.1
Oeu052809.1 Olea europaea HOM05D004845 ORTHO05D005957 1.6e-175 621.3 1113 45.9
Psat4g193760 Pisum sativum HOM05D004845 ORTHO05D005957 3.0e-174 617.1 1041 46.4
PSO170G6909 Papaver somniferum HOM05D004845 ORTHO05D005957 1.5e-170 604.7 1278 43.4
Hund07666 Selenicereus undatus HOM05D004845 ORTHO05D005957 3.4e-170 603.6 1255 44.1
Aqoxy7G00060 Aquilegia oxysepala HOM05D004845 ORTHO05D005957 2.9e-169 600.5 1245 42.5
Eucgr.J02886 Eucalyptus grandis HOM05D004845 ORTHO05D005957 1.3e-161 575.1 1030 46.5
CSS0001379 Camellia sinensis var. sinensis HOM05D004845 ORTHO05D005957 1.7e-158 564.7 859 51.2
DCAR_007608 Daucus carota HOM05D004845 ORTHO05D005957 3.3e-157 560.5 1239 41.4
ECA232G1750 Erigeron canadensis HOM05D004845 ORTHO05D005957 1.3e-156 558.5 1252 40.9
Thhalv10019924m.g Eutrema salsugineum HOM05D004845 ORTHO05D005957 6.2e-156 556.2 1222 40.8
EL10Ac9g21102 Beta vulgaris HOM05D004845 ORTHO05D005957 1.9e-152 544.7 1184 42.9
TPR.G8763 Trifolium pratense HOM05D004845 ORTHO05D005957 1.9e-152 544.7 1241 40.6
Oeu026736.3 Olea europaea HOM05D004845 ORTHO05D005957 2.1e-151 541.2 1246 38.2
AL3G35330 Arabidopsis lyrata HOM05D004845 ORTHO05D005957 1.5e-149 535.0 1289 39.0
Haze_15920 Corylus avellana HOM05D004845 ORTHO05D005957 2.5e-149 534.3 575 56.3
HanXRQChr09g0276331 Helianthus annuus HOM05D004845 ORTHO05D005957 9.0e-147 525.8 1245 39.8
Carub.0003s2130 Capsella rubella HOM05D004845 ORTHO05D005957 1.2e-146 525.4 1283 38.5
Sp3g19330 Schrenkiella parvula HOM05D004845 ORTHO05D005957 8.4e-145 519.2 1253 38.5
AUR62038325 Chenopodium quinoa HOM05D004845 ORTHO05D005957 2.1e-143 514.6 1205 37.4
Lsat_1_v5_gn_4_95940 Lactuca sativa HOM05D004845 ORTHO05D005957 2.5e-141 507.7 1242 39.2
AUR62023919 Chenopodium quinoa HOM05D004845 ORTHO05D005957 7.4e-141 506.1 1223 37.3
AT3G21290 Arabidopsis thaliana HOM05D004845 ORTHO05D005957 4.5e-138 496.9 1294 38.0
BcaB06g26218 Brassica carinata HOM05D004845 ORTHO05D005957 1.8e-131 474.9 1256 37.8
BraA05t21625Z Brassica rapa HOM05D004845 ORTHO05D005957 2.5e-128 464.5 1254 36.8
C05p42240 Brassica napus HOM05D004845 ORTHO05D005957 4.2e-128 463.8 1254 36.8
Aa31LG8G7990 Aethionema arabicum HOM05D004845 ORTHO05D005957 9.4e-128 462.6 1234 39.4
A05p27330 Brassica napus HOM05D004845 ORTHO05D005957 4.6e-127 460.3 1255 36.6
ATR0730G184 Amborella trichopoda HOM05D004845 ORTHO05D005957 7.9e-127 459.5 1282 37.8
BcaC05g28184 Brassica carinata HOM05D004845 ORTHO05D005957 1.8e-126 458.4 1254 36.8
BolC5t32952H Brassica oleracea HOM05D004845 ORTHO05D005957 1.8e-126 458.4 1254 36.8
CDE10G0270 Ceratophyllum demersum HOM05D004845 ORTHO05D005957 1.5e-125 455.3 1251 38.6
SGA_v2.0_scaffold71G23747 Striga asiatica HOM05D004845 ORTHO05D005957 4.3e-125 453.8 1263 37.5
Lj5C49T6 Lonicera japonica HOM05D004845 ORTHO05D005957 7.4e-125 453.0 1039 38.3
Actinidia21742 Actinidia chinensis HOM05D004845 ORTHO05D005957 8.5e-121 439.5 908 37.7
HanXRQChr05g0140141 Helianthus annuus HOM05D004845 ORTHO05D005957 1.1e-117 429.1 1245 36.5
Ah.01g016900 Amaranthus hybridus HOM05D004845 ORTHO05D005957 5.7e-117 426.8 1149 38.4
Nitab4.5_0004848g0010 Nicotiana tabacum HOM05D004845 ORTHO05D005957 1.3e-108 399.1 1248 36.3
CARHR097190 Cardamine hirsuta HOM05D004845 ORTHO05D005957 9.4e-96 356.3 1053 36.8
Zm00001eb006560 Zea mays HOM05D004845 ORTHO05D005957 6.8e-94 350.1 1282 34.6
Medtr8g015610 Medicago truncatula HOM05D004845 ORTHO05D005957 3.7e-92 344.4 1054 31.8
Lalb_Chr15g0087461 Lupinus albus HOM05D004845 ORTHO05D005957 5.9e-90 337.0 1113 33.1
MBI01_g37799_MAGBIO Magnolia biondii HOM05D004845 ORTHO05D005957 9.5e-88 329.7 758 37.5
CDE10G0876 Ceratophyllum demersum HOM05D004845 ORTHO05D005957 7.5e-85 320.1 431 48.5
Zm00001eb401540 Zea mays HOM05D004845 ORTHO05D005957 8.3e-84 316.6 1303 34.0
SGA_v2.0_scaffold45G16992 Striga asiatica HOM05D004845 ORTHO05D005957 3.9e-81 307.8 1261 30.7
unitig_749.g14048 Utricularia gibba HOM05D004845 ORTHO05D005957 6.6e-81 307.0 1132 33.9
SEGI_05846 Sequoiadendron giganteum HOM05D004845 ORTHO05D005957 5.6e-80 303.9 1363 30.5
BcaC09g49066 Brassica carinata HOM05D004845 ORTHO05D005957 4.4e-77 294.3 1262 31.1
Atru.chr1.3631 Acer truncatum HOM05D001194 ORTHO05D005909 1.8e-70 272.3 318 52.5
SEGI_07021 Sequoiadendron giganteum HOM05D004845 ORTHO05D005957 1.3e-68 266.2 1333 29.9
Lalb_Chr14g0372881 Lupinus albus HOM05D004845 ORTHO05D005957 1.7e-68 265.8 1047 33.6
Actinidia21743 Actinidia chinensis HOM05D004845 ORTHO05D005957 1.7e-60 239.2 324 51.9
Duzib192G0218 Durio zibethinus HOM05D004845 ORTHO05D005957 2.9e-52 211.8 276 51.1
HPP92_028291 Vanilla planifolia HOM05D004845 ORTHO05D005957 8.1e-47 193.7 214 56.1
Lalb_Chr14g0372871 Lupinus albus HOM05D004845 ORTHO05D005957 1.8e-46 192.6 199 56.8
CDE10G0326 Ceratophyllum demersum HOM05D004845 ORTHO05D005957 1.5e-45 189.5 694 31.0
Mapoly0021s0057 Marchantia polymorpha HOM05D004845 ORTHO05D005957 1.7e-44 186.0 482 36.3
Pp3c12_1570 Physcomitrium patens HOM05D004845 ORTHO05D005957 2.5e-40 172.2 462 34.6
AagrBONN_evm.TU.Sc2ySwM_344.5033 Anthoceros agrestis HOM05D004845 ORTHO05D005957 3.6e-39 168.3 1307 26.7
Os03g0187100 Oryza sativa ssp. japonica HOM05D004845 ORTHO05D005957 1.4e-38 166.4 761 30.0
SMO334G0114 Selaginella moellendorffii HOM05D004845 ORTHO05D005957 3.4e-37 161.8 452 31.2
BolC1t04240H Brassica oleracea HOM05D004845 ORTHO05D005957 4.2e-35 154.8 132 65.2
C01p42960 Brassica napus HOM05D004845 ORTHO05D005957 4.6e-34 151.4 123 66.7
Haze_15921 Corylus avellana HOM05D004845 ORTHO05D005957 2.4e-30 139.0 217 47.0
HPP92_028293 Vanilla planifolia HOM05D004845 ORTHO05D005957 7.6e-29 134.0 190 43.7
Ca_23296_v3 Cicer arietinum L. HOM05D004845 ORTHO05D005957 1.3e-28 133.3 250 38.8
unitig_749.g14049 Utricularia gibba HOM05D004845 ORTHO05D005957 8.4e-28 130.6 105 58.1
Ca_23298_v3 Cicer arietinum L. HOM05D004845 ORTHO05D005957 7.9e-26 124.0 170 47.1
C01p42950 Brassica napus HOM05D004845 ORTHO05D005957 8.7e-25 120.6 147 48.3
SHI11164 Sapria himalayana HOM05D004845 ORTHO05D003034 1.1e-22 113.6 61 83.6
Cpa.g.sc131.32 Carica papaya HOM05D004845 ORTHO05D005957 3.6e-18 98.6 127 53.5
CBR_g20996 Chara braunii HOM05D004845 ORTHO05D005957 4.6e-18 98.2 198 37.9
Actinidia32135 Actinidia chinensis HOM05D004845 ORTHO05D005957 5.1e-17 94.7 134 53.0
CBR_g20995 Chara braunii HOM05D004845 ORTHO05D005957 2.2e-15 89.4 108 44.4
PGSC0003DMG400002508 Solanum tuberosum HOM05D004845 ORTHO05D005957 1.5e-13 83.2 127 46.5
Zm00001eb424050 Zea mays HOM05D002942 ORTHO05D003270 8.5e-12 77.4 52 69.2
SHI11167 Sapria himalayana HOM05D004845 ORTHO05D005957 4.2e-11 75.1 216 31.0
Medtr1g021875 Medicago truncatula HOM05D004845 ORTHO05D005957 1.6e-10 73.2 59 66.1
BolC1t04238H Brassica oleracea HOM05D004845 ORTHO05D005957 1.5e-08 66.6 55 60.0
SHI11163 Sapria himalayana HOM05D004845 ORTHO05D005957 2.6e-08 65.9 129 42.6


User provided reference genes

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