Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN14G1919 Fragaria x ananassa HOM05D005320 ORTHO05D007922 6.1e-154 547.4 260 100.0
FAN05G0090 Fragaria x ananassa HOM05D005320 ORTHO05D007922 5.7e-144 514.2 251 97.6
FvH4_6g13220 Fragaria vesca HOM05D005320 ORTHO05D007922 9.2e-118 427.2 203 98.5
FAN02G2927 Fragaria x ananassa HOM05D005320 ORTHO05D007922 2.1e-117 426.0 203 98.5
RcHm_v2.0_Chr3g0466041 Rosa chinensis HOM05D005320 ORTHO05D007922 2.6e-112 409.1 203 93.1
Prupe.6G259400 Prunus persica HOM05D005320 ORTHO05D007922 9.6e-107 390.6 200 92.0
MD12G1146200 Malus domestica HOM05D005320 ORTHO05D007922 4.7e-106 388.3 200 91.5
MD04G1133400 Malus domestica HOM05D005320 ORTHO05D007922 1.4e-105 386.7 200 91.0
TWI74G0393 Tripterygium wilfordii HOM05D005320 ORTHO05D007922 5.2e-105 384.8 203 88.7
Dinv35573 Davidia involucrata HOM05D005320 ORTHO05D007922 2.0e-104 382.9 200 89.5
Nitab4.5_0000770g0150 Nicotiana tabacum HOM05D005320 ORTHO05D007922 2.0e-104 382.9 200 90.0
RcHm_v2.0_Chr3g0466001 Rosa chinensis HOM05D005320 ORTHO05D007922 2.0e-104 382.9 185 94.6
GSVIVG01034127001 Vitis vinifera HOM05D005320 ORTHO05D007922 5.8e-104 381.3 200 88.5
CAN.G324.16 Capsicum annuum HOM05D005320 ORTHO05D007922 9.9e-104 380.6 203 88.2
Gohir.A04G083900 Gossypium hirsutum HOM05D005320 ORTHO05D007922 9.9e-104 380.6 200 89.5
Actinidia05326 Actinidia chinensis HOM05D005320 ORTHO05D007922 1.3e-103 380.2 200 90.0
Gohir.D04G122700 Gossypium hirsutum HOM05D005320 ORTHO05D007922 2.2e-103 379.4 200 89.5
CANSAT35G1431 Cannabis sativa HOM05D005320 ORTHO05D007922 2.9e-103 379.0 201 89.1
Manes.09G092200 Manihot esculenta HOM05D005320 ORTHO05D007922 8.4e-103 377.5 200 89.0
PGR031G0341 Punica granatum HOM05D005320 ORTHO05D007922 3.2e-102 375.6 200 88.0
CiPaw.09G195900 Carya illinoinensis HOM05D005320 ORTHO05D007922 4.2e-102 375.2 200 88.5
Gorai.012G105600 Gossypium raimondii HOM05D005320 ORTHO05D007922 5.4e-102 374.8 204 87.7
Lj3A964T54 Lonicera japonica HOM05D005320 ORTHO05D007922 5.4e-102 374.8 203 86.7
Rhsim05G0195000 Rhododendron simsii HOM05D005320 ORTHO05D007922 5.4e-102 374.8 200 88.0
Sc07g0007050 Simmondsia chinensis HOM05D005320 ORTHO05D007922 5.4e-102 374.8 198 87.9
Thecc.05G035400 Theobroma cacao HOM05D005320 ORTHO05D007922 5.4e-102 374.8 201 88.6
Sopen10g034290 Solanum pennellii HOM05D005320 ORTHO05D007922 9.3e-102 374.0 200 88.0
Solyc10g084850.2 Solanum lycopersicum HOM05D005320 ORTHO05D007922 1.2e-101 373.6 200 88.0
PGSC0003DMG400011070 Solanum tuberosum HOM05D005320 ORTHO05D007922 1.2e-101 373.6 200 88.0
Lsat_1_v5_gn_5_153940 Lactuca sativa HOM05D005320 ORTHO05D007922 1.6e-101 373.2 200 88.0
Atru.chr8.2015 Acer truncatum HOM05D005320 ORTHO05D007922 2.7e-101 372.5 201 87.1
MSTRG.19072 Avicennia marina HOM05D005320 ORTHO05D007922 2.7e-101 372.5 200 86.5
Ca_20076_v3 Cicer arietinum L. HOM05D005320 ORTHO05D007922 2.7e-101 372.5 203 86.2
PSO339G2759 Papaver somniferum HOM05D005320 ORTHO05D007922 6.0e-101 371.3 200 86.5
QL07p030104 Quercus lobata HOM05D005320 ORTHO05D007922 6.0e-101 371.3 199 86.4
QL07p030908 Quercus lobata HOM05D005320 ORTHO05D007922 6.0e-101 371.3 199 86.4
Migut.J00304 Erythranthe guttata HOM05D005320 ORTHO05D007922 7.8e-101 370.9 200 86.0
unitig_21.g21010 Utricularia gibba HOM05D005320 ORTHO05D007922 7.8e-101 370.9 200 86.0
arahy.Tifrunner.gnm1.ann1.AE34S8 Arachis hypogaea HOM05D005320 ORTHO05D007922 1.0e-100 370.5 200 87.0
arahy.Tifrunner.gnm1.ann1.SHW8SI Arachis hypogaea HOM05D005320 ORTHO05D007922 1.0e-100 370.5 200 87.0
SGA_v2.0_scaffold126G33759 Striga asiatica HOM05D005320 ORTHO05D007922 1.3e-100 370.2 200 86.0
CSS0049441 Camellia sinensis var. sinensis HOM05D005320 ORTHO05D007922 2.3e-100 369.4 204 86.8
Dinv37147 Davidia involucrata HOM05D005320 ORTHO05D007922 2.3e-100 369.4 222 80.2
HanXRQChr13g0406901 Helianthus annuus HOM05D005320 ORTHO05D007922 2.3e-100 369.4 200 87.5
COL.COLO4_14757 Corchorus olitorius HOM05D005320 ORTHO05D007922 3.0e-100 369.0 200 87.5
Ciclev10012735m.g Citrus clementina HOM05D005320 ORTHO05D007922 5.1e-100 368.2 200 85.5
Cc06_g02320 Coffea canephora HOM05D005320 ORTHO05D007922 6.6e-100 367.9 196 86.7
Hma1.2p1_1082F.1_g255150 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 6.6e-100 367.9 201 87.1
Potri.016G100600 Populus trichocarpa HOM05D005320 ORTHO05D007922 6.6e-100 367.9 196 87.2
Nn2g11189 Nelumbo nucifera HOM05D005320 ORTHO05D007922 8.7e-100 367.5 200 84.5
ECA248G2752 Erigeron canadensis HOM05D005320 ORTHO05D007922 1.1e-99 367.1 200 87.0
Medtr4g020460 Medicago truncatula HOM05D005320 ORTHO05D007922 1.5e-99 366.7 203 84.7
Aqoxy1G00876 Aquilegia oxysepala HOM05D005320 ORTHO05D007922 1.9e-99 366.3 200 85.5
PSO063G2683 Papaver somniferum HOM05D005320 ORTHO05D007922 1.9e-99 366.3 192 89.1
TAR623G0888 Trochodendron aralioides HOM05D005320 ORTHO05D007922 1.9e-99 366.3 200 84.5
Glyma.03G068800 Glycine max HOM05D005320 ORTHO05D007922 2.5e-99 365.9 200 84.5
Glyma.01G100200 Glycine max HOM05D005320 ORTHO05D007922 4.3e-99 365.2 200 84.5
Lalb_Chr01g0013501 Lupinus albus HOM05D005320 ORTHO05D007922 4.3e-99 365.2 200 86.5
vmacro20179 Vaccinium macrocarpon HOM05D005320 ORTHO05D007922 7.3e-99 364.4 216 81.0
Psat7g239840 Pisum sativum HOM05D005320 ORTHO05D007922 9.6e-99 364.0 203 84.2
TPR.G17890 Trifolium pratense HOM05D005320 ORTHO05D007922 2.1e-98 362.8 203 83.7
Lj3g0008944 Lotus japonicus HOM05D005320 ORTHO05D007922 3.6e-98 362.1 188 89.4
ClCG04G008030 Citrullus lanatus HOM05D005320 ORTHO05D007922 4.8e-98 361.7 200 85.5
CsaV3_4G025180 Cucumis sativus L. HOM05D005320 ORTHO05D007922 1.4e-97 360.1 200 85.0
MBI05_g35634_MAGBIO Magnolia biondii HOM05D005320 ORTHO05D007922 1.8e-97 359.8 200 83.0
Peaxi162Scf00094g00911 Petunia axillaris HOM05D005320 ORTHO05D007922 2.4e-97 359.4 186 89.8
DCAR_012114 Daucus carota HOM05D005320 ORTHO05D007922 3.4e-96 355.5 194 86.6
HPP92_026786 Vanilla planifolia HOM05D005320 ORTHO05D007922 4.5e-96 355.1 201 81.1
THA.LOC104823414 Tarenaya hassleriana HOM05D005320 ORTHO05D007922 9.9e-96 354.0 201 81.1
VMungo0331G1509 Vigna mungo HOM05D005320 ORTHO05D007922 1.7e-95 353.2 195 83.1
CDE06G1896 Ceratophyllum demersum HOM05D005320 ORTHO05D007922 6.4e-95 351.3 191 84.3
Os03g0679000 Oryza sativa ssp. japonica HOM05D005320 ORTHO05D007922 1.4e-94 350.1 201 79.1
Sp4g20060 Schrenkiella parvula HOM05D005320 ORTHO05D007922 1.4e-94 350.1 201 81.1
BcaB06g29019 Brassica carinata HOM05D005320 ORTHO05D007922 2.4e-94 349.4 201 80.6
Oeu007799.1 Olea europaea HOM05D005320 ORTHO05D007922 2.4e-94 349.4 186 87.6
AL4G34610 Arabidopsis lyrata HOM05D005320 ORTHO05D007922 3.2e-94 349.0 201 80.6
AT2G37680 Arabidopsis thaliana HOM05D005320 ORTHO05D007922 3.2e-94 349.0 201 80.6
BraA04t18363Z Brassica rapa HOM05D005320 ORTHO05D007922 3.2e-94 349.0 201 80.1
CDE07G0950 Ceratophyllum demersum HOM05D005320 ORTHO05D007922 3.2e-94 349.0 200 80.0
Thhalv10017226m.g Eutrema salsugineum HOM05D005320 ORTHO05D007922 3.2e-94 349.0 201 80.6
AUR62042382 Chenopodium quinoa HOM05D005320 ORTHO05D007922 5.4e-94 348.2 177 89.8
AUR62043523 Chenopodium quinoa HOM05D005320 ORTHO05D007922 2.1e-93 346.3 180 88.9
BcaC02g07499 Brassica carinata HOM05D005320 ORTHO05D007922 4.6e-93 345.1 201 80.6
CARHR131860 Cardamine hirsuta HOM05D005320 ORTHO05D007922 6.0e-93 344.7 201 80.1
Os01g0144200 Oryza sativa ssp. japonica HOM05D005320 ORTHO05D007922 6.0e-93 344.7 201 77.6
Sed0022090 Sechium edule HOM05D005320 ORTHO05D007922 1.8e-92 343.2 200 82.0
Atru.chr8.2014 Acer truncatum HOM05D005320 ORTHO05D007922 1.5e-91 340.1 175 89.1
Carub.0004s1963 Capsella rubella HOM05D005320 ORTHO05D007922 2.5e-91 339.3 191 81.2
Aa31sc70G70 Aethionema arabicum HOM05D005320 ORTHO05D007922 5.6e-91 338.2 200 79.5
Nitab4.5_0005100g0070 Nicotiana tabacum HOM05D005320 ORTHO05D007922 9.6e-91 337.4 174 89.7
BolC4t28116H Brassica oleracea HOM05D005320 ORTHO05D007922 6.2e-90 334.7 196 79.1
A04p28870 Brassica napus HOM05D005320 ORTHO05D007922 1.4e-89 333.6 199 77.4
CSS0000536 Camellia sinensis var. sinensis HOM05D005320 ORTHO05D007922 1.4e-89 333.6 181 86.7
Duzib128G0467 Durio zibethinus HOM05D005320 ORTHO05D007922 6.9e-89 331.3 173 87.9
Eucgr.K01475 Eucalyptus grandis HOM05D005320 ORTHO05D007922 9.0e-89 330.9 226 72.6
C04p66130 Brassica napus HOM05D005320 ORTHO05D007922 2.2e-87 326.2 188 80.3
Phvul.010G015600 Phaseolus vulgaris HOM05D005320 ORTHO05D007922 4.9e-87 325.1 173 86.1
Mapoly0038s0068 Marchantia polymorpha HOM05D005320 ORTHO05D007922 8.4e-87 324.3 196 73.0
Duzib093G0721 Durio zibethinus HOM05D005320 ORTHO05D007922 7.1e-86 321.2 174 86.2
Zm00001eb124510 Zea mays HOM05D005320 ORTHO05D007922 1.9e-83 313.2 169 83.4
Pp3c6_13830 Physcomitrium patens HOM05D005320 ORTHO05D007922 2.8e-82 309.3 215 65.1
SMO356G0269 Selaginella moellendorffii HOM05D005320 ORTHO05D007922 3.1e-81 305.8 196 67.9
ATR0559G120 Amborella trichopoda HOM05D005320 ORTHO05D007922 2.6e-80 302.8 177 78.0
AagrBONN_evm.TU.Sc2ySwM_117.2668 Anthoceros agrestis HOM05D005320 ORTHO05D007922 1.0e-76 290.8 196 66.8
Cpa.g.c45575 Carica papaya HOM05D005320 ORTHO05D007922 1.6e-74 283.5 145 90.3
Hma1.2p1_0936F.1_g239015 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 1.2e-72 277.3 172 78.5
Hma1.2p1_1082F.1_g255160 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 1.2e-72 277.3 172 78.5
CBR_g30417 Chara braunii HOM05D005320 ORTHO05D007922 3.2e-70 269.2 199 62.8
Zm00001eb335820 Zea mays HOM05D005320 ORTHO05D007922 5.5e-70 268.5 145 84.1
RcHm_v2.0_Chr3g0465971 Rosa chinensis HOM05D005320 ORTHO05D007922 2.3e-68 263.1 133 91.0
EL10As1g23111 Beta vulgaris HOM05D005320 ORTHO05D007922 5.1e-68 261.9 133 91.0
Sabra16G0101600 Salix brachista HOM05D005320 ORTHO05D007922 3.4e-64 249.2 133 86.5
Haze_20829 Corylus avellana HOM05D005320 ORTHO05D007922 3.0e-60 236.1 121 87.6
RcHm_v2.0_Chr3g0465901 Rosa chinensis HOM05D005320 ORTHO05D007922 2.0e-59 233.4 144 78.5
HPP92_000741 Vanilla planifolia HOM05D005320 ORTHO05D007922 7.4e-59 231.5 130 81.5
Hma1.2p1_1082F.1_g255140 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 1.2e-48 197.6 110 83.6
RcHm_v2.0_Chr3g0465921 Rosa chinensis HOM05D005320 ORTHO05D007922 7.5e-43 178.3 89 94.4
HPP92_000739 Vanilla planifolia HOM05D005320 ORTHO05D007922 3.8e-39 166.0 97 82.5
Hma1.2p1_0766F.1_g215380 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 5.0e-39 165.6 91 84.6
EL10As1g23112 Beta vulgaris HOM05D005320 ORTHO05D007922 8.0e-29 131.7 71 85.9
Cre17.g744497 Chlamydomonas reinhardtii HOM05D005320 ORTHO05D007922 2.7e-24 116.7 208 34.1
Mapoly0050s0129 Marchantia polymorpha HOM05D005320 ORTHO05D007922 7.8e-24 115.2 217 34.6
Haze_20831 Corylus avellana HOM05D000026 ORTHO05D000094 1.0e-23 114.8 67 77.6
RcHm_v2.0_Chr7g0189661 Rosa chinensis HOM05D005320 ORTHO05D007922 9.8e-19 98.2 64 73.4
MELO3C003145.2 Cucumis melo HOM05D000231 ORTHO05D000132 1.2e-13 81.3 40 90.0
RcHm_v2.0_Chr4g0436891 Rosa chinensis HOM05D005320 ORTHO05D007922 2.3e-12 77.0 64 60.9
Pp3c27_5960 Physcomitrium patens HOM05D005320 ORTHO05D007922 7.0e-09 65.5 41 65.9


User provided reference genes

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