Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN14G1903 Fragaria x ananassa HOM05D004631 ORTHO05D005223 3.3e-128 461.8 253 100.0
FAN05G1873 Fragaria x ananassa HOM05D004631 ORTHO05D005223 6.9e-126 454.1 253 98.4
FvH4_6g52650 Fragaria vesca HOM05D004631 ORTHO05D005223 8.9e-126 453.8 253 99.2
FAN09G3073 Fragaria x ananassa HOM05D004631 ORTHO05D005223 4.2e-123 444.9 253 95.7
FAN02G2863 Fragaria x ananassa HOM05D004631 ORTHO05D005223 2.7e-122 442.2 253 92.5
RcHm_v2.0_Chr2g0174181 Rosa chinensis HOM05D004631 ORTHO05D005223 6.7e-113 411.0 253 90.9
Prupe.3G299600 Prunus persica HOM05D004631 ORTHO05D005223 1.1e-96 357.1 253 76.3
Duzib147G1024 Durio zibethinus HOM05D004631 ORTHO05D005223 8.7e-89 330.9 255 70.2
MD17G1018100 Malus domestica HOM05D004631 ORTHO05D005223 1.5e-88 330.1 254 70.9
QL02p072911 Quercus lobata HOM05D004631 ORTHO05D005223 4.3e-88 328.6 257 72.4
Thecc.04G027600 Theobroma cacao HOM05D004631 ORTHO05D005223 9.7e-88 327.4 255 72.9
CANSAT64G0886 Cannabis sativa HOM05D004631 ORTHO05D005223 2.8e-87 325.9 255 72.9
Lj7A605T75 Lonicera japonica HOM05D004631 ORTHO05D005223 2.0e-85 319.7 246 69.5
Cfa007277 Carpinus fangiana HOM05D004631 ORTHO05D005223 2.6e-85 319.3 256 70.7
Duzib264G0826 Durio zibethinus HOM05D004631 ORTHO05D005223 2.6e-85 319.3 255 68.6
MD09G1017300 Malus domestica HOM05D004631 ORTHO05D005223 1.3e-84 317.0 255 69.4
Atru.chr6.2487 Acer truncatum HOM05D004631 ORTHO05D005223 2.9e-84 315.8 253 70.4
Eucgr.I01692 Eucalyptus grandis HOM05D004631 ORTHO05D005223 5.0e-84 315.1 255 69.8
Ciclev10016175m.g Citrus clementina HOM05D004631 ORTHO05D005223 6.5e-84 314.7 286 60.1
Gohir.D10G085100 Gossypium hirsutum HOM05D004631 ORTHO05D005223 8.5e-84 314.3 257 70.4
Hma1.2p1_0227F.1_g095910 Hydrangea macrophylla HOM05D004631 ORTHO05D005223 7.2e-83 311.2 249 68.3
CiPaw.03G050500 Carya illinoinensis HOM05D004631 ORTHO05D005223 9.4e-83 310.8 257 67.3
TWI59G0755 Tripterygium wilfordii HOM05D004631 ORTHO05D005223 9.4e-83 310.8 252 63.5
Haze_14815 Corylus avellana HOM05D004631 ORTHO05D005223 1.2e-82 310.5 274 63.5
Hma1.2p1_0279F.1_g112270 Hydrangea macrophylla HOM05D004631 ORTHO05D005223 1.2e-82 310.5 244 68.4
Gorai.011G093000 Gossypium raimondii HOM05D004631 ORTHO05D005223 1.6e-82 310.1 258 70.2
RhsimUnG0241300 Rhododendron simsii HOM05D004631 ORTHO05D005223 2.7e-82 309.3 254 65.4
Rhsim08G0046200 Rhododendron simsii HOM05D004631 ORTHO05D005223 7.9e-82 307.8 246 67.1
Gohir.A10G160500 Gossypium hirsutum HOM05D004631 ORTHO05D005223 3.9e-81 305.4 259 69.5
CSS0019664 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 5.1e-81 305.1 250 66.0
TAR371G0552 Trochodendron aralioides HOM05D004631 ORTHO05D005223 5.1e-81 305.1 253 67.6
CSS0019474 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 8.8e-81 304.3 254 64.6
Gorai.012G089800 Gossypium raimondii HOM05D004631 ORTHO05D005223 7.4e-80 301.2 258 64.3
Potri.009G059300 Populus trichocarpa HOM05D004631 ORTHO05D005223 9.7e-80 300.8 253 68.8
Gohir.D04G079800 Gossypium hirsutum HOM05D004631 ORTHO05D005223 1.7e-79 300.1 258 64.3
CiPaw.04G033100 Carya illinoinensis HOM05D004631 ORTHO05D005223 3.7e-79 298.9 256 64.5
Nn4g22438 Nelumbo nucifera HOM05D004631 ORTHO05D005223 3.7e-79 298.9 247 64.4
MSTRG.24067 Avicennia marina HOM05D004631 ORTHO05D005223 8.2e-79 297.7 246 62.6
vmacro05924 Vaccinium macrocarpon HOM05D004631 ORTHO05D005223 5.3e-78 295.0 254 63.4
Sabra09G0043700 Salix brachista HOM05D004631 ORTHO05D005223 6.9e-78 294.7 253 63.2
COL.COLO4_29276 Corchorus olitorius HOM05D004631 ORTHO05D005223 9.1e-78 294.3 226 68.1
GSVIVG01001850001 Vitis vinifera HOM05D004631 ORTHO05D005223 1.5e-77 293.5 233 68.7
Potri.001G264500 Populus trichocarpa HOM05D004631 ORTHO05D005223 3.4e-77 292.4 253 67.6
Manes.15G156400 Manihot esculenta HOM05D004631 ORTHO05D005223 5.9e-77 291.6 232 67.2
vmacro18314 Vaccinium macrocarpon HOM05D004631 ORTHO05D005223 1.0e-76 290.8 225 68.0
Cc07_g00410 Coffea canephora HOM05D004631 ORTHO05D005223 1.3e-76 290.4 247 64.8
Gohir.A05G341700 Gossypium hirsutum HOM05D004631 ORTHO05D005223 1.3e-76 290.4 225 69.8
Lsat_1_v5_gn_0_32720 Lactuca sativa HOM05D004631 ORTHO05D005223 1.7e-76 290.0 250 64.4
PSO782G2324 Papaver somniferum HOM05D004631 ORTHO05D005223 2.9e-76 289.3 242 60.3
Glyma.19G082400 Glycine max HOM05D004631 ORTHO05D005223 3.8e-76 288.9 248 68.1
PSO063G4908 Papaver somniferum HOM05D004631 ORTHO05D005223 3.8e-76 288.9 242 61.2
SGA_v2.0_scaffold18G08240 Striga asiatica HOM05D004631 ORTHO05D005223 3.8e-76 288.9 249 61.0
DCAR_021756 Daucus carota HOM05D004631 ORTHO05D005223 5.0e-76 288.5 238 65.5
PGR142G2057 Punica granatum HOM05D004631 ORTHO05D005223 5.0e-76 288.5 257 63.4
Glyma.16G063100 Glycine max HOM05D004631 ORTHO05D005223 6.5e-76 288.1 261 61.7
Sopen02g038460 Solanum pennellii HOM05D004631 ORTHO05D005223 1.1e-75 287.3 260 61.9
Solyc02g093820.4 Solanum lycopersicum HOM05D004631 ORTHO05D005223 1.4e-75 287.0 260 61.9
PGSC0003DMG400020270 Solanum tuberosum HOM05D004631 ORTHO05D005223 1.4e-75 287.0 260 61.9
TAR629G3282 Trochodendron aralioides HOM05D004631 ORTHO05D005223 1.4e-75 287.0 253 64.8
HanXRQChr17g0549531 Helianthus annuus HOM05D004631 ORTHO05D005223 2.5e-75 286.2 235 66.4
CAN.G473.59 Capsicum annuum HOM05D004631 ORTHO05D005223 5.5e-75 285.0 257 62.3
TWI23G0469 Tripterygium wilfordii HOM05D004631 ORTHO05D005223 5.5e-75 285.0 252 64.3
Manes.07G089400 Manihot esculenta HOM05D004631 ORTHO05D005223 1.2e-74 283.9 232 65.1
Sabra16G0162600 Salix brachista HOM05D004631 ORTHO05D005223 1.2e-74 283.9 254 61.8
AUR62032242 Chenopodium quinoa HOM05D004631 ORTHO05D005223 1.6e-74 283.5 245 63.7
Sed0025843 Sechium edule HOM05D004631 ORTHO05D005223 1.0e-73 280.8 246 63.0
arahy.Tifrunner.gnm1.ann1.5W0L45 Arachis hypogaea HOM05D004631 ORTHO05D005223 1.4e-73 280.4 259 62.2
Migut.H00060 Erythranthe guttata HOM05D004631 ORTHO05D005223 2.3e-73 279.6 246 58.9
Lalb_Chr14g0363051 Lupinus albus HOM05D004631 ORTHO05D005223 2.3e-73 279.6 246 60.6
arahy.Tifrunner.gnm1.ann1.NS464T Arachis hypogaea HOM05D004631 ORTHO05D005223 5.2e-73 278.5 259 61.8
AUR62011927 Chenopodium quinoa HOM05D004631 ORTHO05D005223 5.2e-73 278.5 245 63.3
Aqoxy5G03556 Aquilegia oxysepala HOM05D004631 ORTHO05D005223 1.5e-72 276.9 240 62.1
Lj2g0014181 Lotus japonicus HOM05D004631 ORTHO05D005223 9.7e-72 274.2 247 62.3
Cpa.g.c34704 Carica papaya HOM05D004631 ORTHO05D005223 1.3e-71 273.9 226 67.3
Ca_04405_v3 Cicer arietinum L. HOM05D004631 ORTHO05D005223 1.3e-71 273.9 258 61.6
Peaxi162Scf00420g00345 Petunia axillaris HOM05D004631 ORTHO05D005223 1.3e-71 273.9 247 59.1
EL10Ac5g10455 Beta vulgaris HOM05D004631 ORTHO05D005223 1.7e-71 273.5 246 61.8
Sed0000329 Sechium edule HOM05D004631 ORTHO05D005223 2.2e-71 273.1 248 64.9
ClCG11G006850 Citrullus lanatus HOM05D004631 ORTHO05D005223 4.8e-71 271.9 283 55.5
Peaxi162Scf00420g00342 Petunia axillaris HOM05D004631 ORTHO05D005223 6.3e-71 271.6 244 59.4
Actinidia05943 Actinidia chinensis HOM05D000918 ORTHO05D000791 1.1e-70 270.8 211 67.8
DCAR_011290 Daucus carota HOM05D004631 ORTHO05D005223 2.4e-70 269.6 236 63.1
Dinv25693 Davidia involucrata HOM05D004631 ORTHO05D005223 1.2e-69 267.3 206 74.8
MSTRG.3110 Avicennia marina HOM05D004631 ORTHO05D005223 1.6e-69 266.9 249 59.0
Oeu050430.2 Olea europaea HOM05D004631 ORTHO05D005223 2.0e-69 266.5 282 54.6
HanXRQChr15g0487081 Helianthus annuus HOM05D004631 ORTHO05D005223 4.5e-69 265.4 251 61.0
TPR.G29003 Trifolium pratense HOM05D004631 ORTHO05D005223 5.9e-69 265.0 255 60.8
SalBow1G3920 Salvia bowleyana HOM05D004631 ORTHO05D005223 1.3e-68 263.8 279 54.1
Psat1g084240 Pisum sativum HOM05D004631 ORTHO05D005223 1.7e-68 263.5 255 63.1
VMungo1383G3654 Vigna mungo HOM05D004631 ORTHO05D005223 1.7e-68 263.5 233 61.4
CsaV3_6G001200 Cucumis sativus L. HOM05D004631 ORTHO05D005223 2.9e-68 262.7 236 60.2
SalBow1G0328 Salvia bowleyana HOM05D004631 ORTHO05D005223 8.5e-68 261.2 279 53.8
Carub.0005s0558 Capsella rubella HOM05D004631 ORTHO05D005223 1.5e-67 260.4 257 57.6
CARHR148590 Cardamine hirsuta HOM05D004631 ORTHO05D005223 2.5e-67 259.6 251 58.2
Thhalv10004822m.g Eutrema salsugineum HOM05D004631 ORTHO05D005223 2.5e-67 259.6 246 58.1
Lsat_1_v5_gn_4_185741 Lactuca sativa HOM05D004631 ORTHO05D005223 2.5e-67 259.6 254 60.6
ECA232G0338 Erigeron canadensis HOM05D004631 ORTHO05D005223 3.2e-67 259.2 255 58.0
MBI05_g32279_MAGBIO Magnolia biondii HOM05D004631 ORTHO05D005223 7.2e-67 258.1 230 67.0
AT3G27310 Arabidopsis thaliana HOM05D004631 ORTHO05D005223 1.2e-66 257.3 257 57.6
Ah.11g049900 Amaranthus hybridus HOM05D000470 ORTHO05D000348 6.1e-66 255.0 229 58.5
CSS0005098 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 6.1e-66 255.0 195 70.8
ECA246G0472 Erigeron canadensis HOM05D004631 ORTHO05D005223 2.3e-65 253.1 243 60.9
Phvul.008G148800 Phaseolus vulgaris HOM05D004631 ORTHO05D005223 5.2e-65 251.9 260 56.2
unitig_62.g23368 Utricularia gibba HOM05D004631 ORTHO05D005223 5.7e-64 248.4 228 60.5
BcaC06g31006 Brassica carinata HOM05D004631 ORTHO05D005223 9.7e-64 247.7 248 57.3
BcaC06g33833 Brassica carinata HOM05D004631 ORTHO05D005223 6.3e-63 245.0 251 56.2
BolC7t44152H Brassica oleracea HOM05D004631 ORTHO05D005223 6.3e-63 245.0 251 56.2
C07p36360 Brassica napus HOM05D004631 ORTHO05D005223 3.1e-62 242.7 251 55.4
AL5G16540 Arabidopsis lyrata HOM05D004631 ORTHO05D005223 1.2e-61 240.7 235 57.4
Aa31LG2G5340 Aethionema arabicum HOM05D004631 ORTHO05D005223 1.6e-61 240.4 260 54.2
Dinv33383 Davidia involucrata HOM05D004631 ORTHO05D005223 2.0e-61 240.0 165 76.4
Sc03g0007030 Simmondsia chinensis HOM05D004631 ORTHO05D005223 2.0e-61 240.0 193 65.8
Sp2g16470 Schrenkiella parvula HOM05D004631 ORTHO05D005223 7.7e-61 238.0 246 59.8
Lj1g0026695 Lotus japonicus HOM05D004631 ORTHO05D005223 1.3e-60 237.3 262 56.1
A06p41300 Brassica napus HOM05D004631 ORTHO05D005223 2.2e-60 236.5 249 54.6
BraA06t27055Z Brassica rapa HOM05D004631 ORTHO05D005223 2.2e-60 236.5 249 54.6
Medtr6g023080 Medicago truncatula HOM05D004631 ORTHO05D005223 1.4e-57 227.3 209 64.1
HPP92_028037 Vanilla planifolia HOM05D004631 ORTHO05D005223 5.7e-56 221.9 236 53.0
Nitab4.5_0001863g0070 Nicotiana tabacum HOM05D004631 ORTHO05D005223 2.2e-55 219.9 227 59.5
ATR0824G076 Amborella trichopoda HOM05D004631 ORTHO05D005223 1.8e-54 216.9 233 52.8
Oeu058758.2 Olea europaea HOM05D004631 ORTHO05D005223 3.1e-54 216.1 168 67.3
MELO3C008218.2 Cucumis melo HOM05D004631 ORTHO05D005223 2.3e-52 209.9 193 60.6
Ciclev10003548m.g Citrus clementina HOM05D004631 ORTHO05D005223 4.0e-49 199.1 250 52.0
Os04g0485200 Oryza sativa ssp. japonica HOM05D004631 ORTHO05D005223 7.5e-48 194.9 230 49.1
TPR.G2332 Trifolium pratense HOM05D004631 ORTHO05D005223 9.8e-48 194.5 163 62.0
Medtr0531s0010 Medicago truncatula HOM05D004631 ORTHO05D005223 6.3e-47 191.8 170 67.1
Medtr6g022770 Medicago truncatula HOM05D004631 ORTHO05D005223 5.4e-46 188.7 180 57.8
Mapoly0078s0021 Marchantia polymorpha HOM05D004631 ORTHO05D005223 6.6e-44 181.8 241 46.5
Zm00001eb079230 Zea mays HOM05D004631 ORTHO05D005223 3.3e-43 179.5 236 47.5
Zm00001eb425170 Zea mays HOM05D004631 ORTHO05D005223 4.3e-43 179.1 235 47.2
Prupe.8G176800 Prunus persica HOM05D004631 ORTHO05D005223 6.8e-41 171.8 180 56.7
MD10G1138200 Malus domestica HOM05D004631 ORTHO05D005223 4.9e-39 165.6 125 65.6
Potri.001G337533 Populus trichocarpa HOM05D004631 ORTHO05D005223 1.1e-38 164.5 217 47.9
Actinidia35792 Actinidia chinensis HOM05D004631 ORTHO05D005223 1.3e-36 157.5 114 78.1
Nitab4.5_0008718g0050 Nicotiana tabacum HOM05D004631 ORTHO05D005223 4.7e-34 149.1 203 49.8
SMO199G0125 Selaginella moellendorffii HOM05D004631 ORTHO05D005223 5.2e-33 145.6 235 36.6
FAN27G0193 Fragaria x ananassa HOM05D004631 ORTHO05D005223 1.2e-32 144.4 183 51.9
FAN24G1590 Fragaria x ananassa HOM05D004631 ORTHO05D005223 1.5e-32 144.1 183 51.9
FvH4_2g09210 Fragaria vesca HOM05D004631 ORTHO05D005223 1.7e-31 140.6 182 51.1
Pp3c7_140 Physcomitrium patens HOM05D004631 ORTHO05D005223 2.2e-31 140.2 242 37.2
Medtr4g103350 Medicago truncatula HOM05D004631 ORTHO05D005223 3.0e-28 129.8 149 49.7
Eucgr.L03061 Eucalyptus grandis HOM05D004631 ORTHO05D005223 1.9e-27 127.1 80 75.0
HPP92_027613 Vanilla planifolia HOM05D004631 ORTHO05D005223 6.8e-25 118.6 113 51.3
BcaC04g23906 Brassica carinata HOM05D004631 ORTHO05D005223 5.8e-24 115.5 157 47.8
A09p03370 Brassica napus HOM05D004631 ORTHO05D005223 1.9e-22 110.5 118 53.4
BraA09t35975Z Brassica rapa HOM05D004631 ORTHO05D005223 1.9e-22 110.5 118 53.4
BraA09t35976Z Brassica rapa HOM05D004631 ORTHO05D005223 1.9e-22 110.5 118 53.4
RcHm_v2.0_Chr6g0265061 Rosa chinensis HOM05D004631 ORTHO05D005223 6.2e-18 95.5 153 48.4
BcaB04g19435 Brassica carinata HOM05D002252 ORTHO05D002451 4.9e-15 85.9 101 49.5
SMO361G0508 Selaginella moellendorffii HOM05D022709 ORTHO05D005223 1.1e-14 84.7 196 31.1
SMO361G0265 Selaginella moellendorffii HOM05D022709 ORTHO05D005223 1.2e-13 81.3 198 29.8
Zm00001eb055680 Zea mays HOM05D004631 ORTHO05D005223 1.6e-13 80.9 102 45.1
Actinidia36166 Actinidia chinensis HOM05D004631 ORTHO05D005223 2.8e-10 70.1 58 72.4
HPP92_027614 Vanilla planifolia HOM05D004631 ORTHO05D005223 9.0e-09 65.1 106 44.3
Sabra16G0218300 Salix brachista HOM05D004631 ORTHO05D005223 9.9e-08 61.6 151 35.1
C09p03590 Brassica napus HOM05D004631 ORTHO05D005223 1.7e-07 60.8 40 75.0
MSTRG.2140 Avicennia marina HOM05D006041 ORTHO05D007473 1.1e-06 58.2 161 28.6
PSO782G2536 Papaver somniferum HOM05D004631 ORTHO05D005223 9.3e-06 55.1 77 45.5


User provided reference genes

Program Settings