Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_6g18660 Fragaria vesca HOM05D003756 ORTHO05D004304 4.3e-36 154.1 74 100.0
FAN14G1823 Fragaria x ananassa HOM05D003756 ORTHO05D004304 4.3e-36 154.1 74 100.0
FAN05G1127 Fragaria x ananassa HOM05D003756 ORTHO05D004304 1.2e-35 152.5 74 98.6
FAN05G3155 Fragaria x ananassa HOM05D003756 ORTHO05D004304 1.2e-35 152.5 74 98.6
FAN09G2235 Fragaria x ananassa HOM05D003756 ORTHO05D004304 1.2e-35 152.5 74 98.6
FAN02G3109 Fragaria x ananassa HOM05D003756 ORTHO05D004304 4.7e-35 150.6 74 97.3
CANSAT80G0977 Cannabis sativa HOM05D003756 ORTHO05D004304 2.9e-32 141.4 74 91.9
FvH4_5g38790 Fragaria vesca HOM05D003756 ORTHO05D004304 2.9e-32 141.4 72 93.1
Gohir.A09G139300 Gossypium hirsutum HOM05D003756 ORTHO05D004304 3.8e-32 141.0 74 91.9
Gohir.D09G135300 Gossypium hirsutum HOM05D003756 ORTHO05D004304 3.8e-32 141.0 74 91.9
Gorai.006G155200 Gossypium raimondii HOM05D003756 ORTHO05D004304 3.8e-32 141.0 74 91.9
FAN04G2492 Fragaria x ananassa HOM05D003756 ORTHO05D004304 4.2e-31 137.5 70 92.9
Prupe.7G110400 Prunus persica HOM05D003756 ORTHO05D004304 7.1e-31 136.7 72 88.9
RcHm_v2.0_Chr3g0473621 Rosa chinensis HOM05D003756 ORTHO05D004304 7.1e-31 136.7 74 89.2
FAN18G4123 Fragaria x ananassa HOM05D003756 ORTHO05D004304 1.2e-30 136.0 75 89.3
Eucgr.K02043 Eucalyptus grandis HOM05D003756 ORTHO05D004304 2.7e-30 134.8 74 87.8
Psat3g033400 Pisum sativum HOM05D003756 ORTHO05D004304 2.7e-30 134.8 74 89.2
Thecc.05G088800 Theobroma cacao HOM05D003756 ORTHO05D004304 3.5e-30 134.4 74 86.5
CSS0028702 Camellia sinensis var. sinensis HOM05D003756 ORTHO05D004304 4.6e-30 134.0 72 86.1
Gohir.D01G127900 Gossypium hirsutum HOM05D003756 ORTHO05D004304 4.6e-30 134.0 74 86.5
Gorai.002G158500 Gossypium raimondii HOM05D003756 ORTHO05D004304 4.6e-30 134.0 74 86.5
Lalb_Chr20g0111721 Lupinus albus HOM05D003756 ORTHO05D004304 4.6e-30 134.0 75 85.3
ClCG04G010070 Citrullus lanatus HOM05D003756 ORTHO05D004304 6.0e-30 133.7 74 87.8
Prupe.1G506800 Prunus persica HOM05D003756 ORTHO05D004304 6.0e-30 133.7 74 87.8
MD15G1359000 Malus domestica HOM05D003756 ORTHO05D004304 7.8e-30 133.3 72 86.1
Duzib128G1348 Durio zibethinus HOM05D003756 ORTHO05D004304 1.0e-29 132.9 74 85.1
Lj6g0015332 Lotus japonicus HOM05D003756 ORTHO05D004304 1.0e-29 132.9 74 87.8
MD12G1036000 Malus domestica HOM05D003756 ORTHO05D004304 1.0e-29 132.9 74 89.2
Peaxi162Scf00003g00522 Petunia axillaris HOM05D003756 ORTHO05D004304 1.3e-29 132.5 74 85.1
Ca_09004_v3 Cicer arietinum L. HOM05D003756 ORTHO05D004304 1.7e-29 132.1 74 86.5
Sed0014276 Sechium edule HOM05D003756 ORTHO05D004304 1.7e-29 132.1 72 84.7
Ah.15g090880 Amaranthus hybridus HOM05D003756 ORTHO05D004304 2.3e-29 131.7 71 85.9
Cfa016605 Carpinus fangiana HOM05D003756 ORTHO05D004304 2.3e-29 131.7 74 81.1
ClCG10G018980 Citrullus lanatus HOM05D003756 ORTHO05D004304 2.3e-29 131.7 72 84.7
Haze_19608 Corylus avellana HOM05D003756 ORTHO05D004304 2.3e-29 131.7 74 81.1
Duzib106G1642 Durio zibethinus HOM05D003756 ORTHO05D004304 2.3e-29 131.7 74 83.8
Medtr7g104570 Medicago truncatula HOM05D003756 ORTHO05D004304 2.3e-29 131.7 74 86.5
Gohir.A01G138200 Gossypium hirsutum HOM05D003756 ORTHO05D004304 3.0e-29 131.3 74 83.8
MD14G1022700 Malus domestica HOM05D003756 ORTHO05D004304 3.0e-29 131.3 74 87.8
TWI74G1420 Tripterygium wilfordii HOM05D003756 ORTHO05D004304 3.0e-29 131.3 74 78.4
Lalb_Chr25g0288331 Lupinus albus HOM05D003756 ORTHO05D004304 3.9e-29 131.0 74 81.1
Potri.009G149300 Populus trichocarpa HOM05D003756 ORTHO05D004304 3.9e-29 131.0 71 81.7
Cpa.g.sc5.21 Carica papaya HOM05D003756 ORTHO05D004304 6.6e-29 130.2 70 85.7
MELO3C009472.2 Cucumis melo HOM05D003756 ORTHO05D004304 8.7e-29 129.8 72 83.3
CsaV3_3G037270 Cucumis sativus L. HOM05D003756 ORTHO05D004304 8.7e-29 129.8 72 83.3
HanXRQChr01g0024081 Helianthus annuus HOM05D003756 ORTHO05D004304 8.7e-29 129.8 72 86.1
RcHm_v2.0_Chr7g0240771 Rosa chinensis HOM05D003756 ORTHO05D004304 8.7e-29 129.8 72 83.3
Gohir.A01G206400 Gossypium hirsutum HOM05D003756 ORTHO05D004304 1.1e-28 129.4 69 89.9
Gorai.002G240000 Gossypium raimondii HOM05D003756 ORTHO05D004304 1.1e-28 129.4 69 89.9
Sed0019143 Sechium edule HOM05D003756 ORTHO05D004304 1.1e-28 129.4 70 88.6
MELO3C024548.2 Cucumis melo HOM05D003756 ORTHO05D004304 1.5e-28 129.0 72 83.3
Nitab4.5_0000755g0180 Nicotiana tabacum HOM05D003756 ORTHO05D004304 2.5e-28 128.3 72 81.9
TAR636G3345 Trochodendron aralioides HOM05D003756 ORTHO05D004304 2.5e-28 128.3 67 86.6
ClCG04G010050 Citrullus lanatus HOM05D003756 ORTHO05D004304 3.3e-28 127.9 74 85.1
ECA248G1642 Erigeron canadensis HOM05D003756 ORTHO05D004304 3.3e-28 127.9 74 79.7
Gohir.D01G195800 Gossypium hirsutum HOM05D003756 ORTHO05D004304 3.3e-28 127.9 69 88.4
Glyma.03G195700 Glycine max HOM05D003756 ORTHO05D004304 4.3e-28 127.5 70 85.7
Potri.004G188700 Populus trichocarpa HOM05D003756 ORTHO05D004304 4.3e-28 127.5 66 86.4
arahy.Tifrunner.gnm1.ann1.IH6TUL Arachis hypogaea HOM05D003756 ORTHO05D004304 5.6e-28 127.1 74 82.4
ECA233G1974 Erigeron canadensis HOM05D003756 ORTHO05D004304 5.6e-28 127.1 72 81.9
PGR142G3329 Punica granatum HOM05D003756 ORTHO05D004304 5.6e-28 127.1 74 82.4
CiPaw.09G013700 Carya illinoinensis HOM05D003756 ORTHO05D004304 9.6e-28 126.3 71 83.1
Glyma.13G153500 Glycine max HOM05D003756 ORTHO05D004304 9.6e-28 126.3 74 77.0
GSVIVG01033840001 Vitis vinifera HOM05D003756 ORTHO05D004304 9.6e-28 126.3 67 88.1
Lsat_1_v5_gn_1_59380 Lactuca sativa HOM05D003756 ORTHO05D004304 1.3e-27 125.9 68 83.8
QL07p038800 Quercus lobata HOM05D003756 ORTHO05D004304 1.3e-27 125.9 75 78.7
QL07p039050 Quercus lobata HOM05D003756 ORTHO05D004304 1.3e-27 125.9 75 78.7
Sabra04G0129400 Salix brachista HOM05D003756 ORTHO05D004304 1.3e-27 125.9 66 86.4
Lsat_1_v5_gn_6_38741 Lactuca sativa HOM05D003756 ORTHO05D004304 1.6e-27 125.6 70 84.3
HanXRQChr02g0054771 Helianthus annuus HOM05D003756 ORTHO05D004304 2.1e-27 125.2 69 82.6
Manes.08G025100 Manihot esculenta HOM05D003756 ORTHO05D004304 2.1e-27 125.2 70 82.9
Nn6g34903 Nelumbo nucifera HOM05D003756 ORTHO05D004304 2.1e-27 125.2 71 84.5
Aa31LG5G21370 Aethionema arabicum HOM05D003756 ORTHO05D004304 2.8e-27 124.8 74 78.4
Aqoxy2G03946 Aquilegia oxysepala HOM05D003756 ORTHO05D004304 2.8e-27 124.8 74 78.4
CAN.G1358.12 Capsicum annuum HOM05D003756 ORTHO05D004304 2.8e-27 124.8 74 79.7
AUR62006180 Chenopodium quinoa HOM05D003756 ORTHO05D004304 2.8e-27 124.8 66 87.9
AUR62028527 Chenopodium quinoa HOM05D003756 ORTHO05D004304 2.8e-27 124.8 66 87.9
MBI17_g08353_MAGBIO Magnolia biondii HOM05D003756 ORTHO05D004304 3.6e-27 124.4 74 79.7
Sc20g0006280 Simmondsia chinensis HOM05D003756 ORTHO05D004304 3.6e-27 124.4 69 82.6
CiPaw.10G009500 Carya illinoinensis HOM05D003756 ORTHO05D004304 4.8e-27 124.0 69 82.6
MD07G1149900 Malus domestica HOM05D003756 ORTHO05D004304 8.1e-27 123.2 74 82.4
THA.LOC104804928 Tarenaya hassleriana HOM05D003756 ORTHO05D004304 8.1e-27 123.2 69 84.1
CAN.G2235.1 Capsicum annuum HOM05D003756 ORTHO05D004304 1.1e-26 122.9 73 78.1
HPP92_026089 Vanilla planifolia HOM05D003756 ORTHO05D004304 1.1e-26 122.9 66 84.8
Actinidia24215 Actinidia chinensis HOM05D003756 ORTHO05D004304 1.8e-26 122.1 72 83.3
CSS0017737 Camellia sinensis var. sinensis HOM05D003756 ORTHO05D004304 1.8e-26 122.1 69 82.6
CSS0036255 Camellia sinensis var. sinensis HOM05D003756 ORTHO05D004304 1.8e-26 122.1 69 82.6
Solyc11g068400.2 Solanum lycopersicum HOM05D003756 ORTHO05D004304 1.8e-26 122.1 74 82.4
Sopen11g027120 Solanum pennellii HOM05D003756 ORTHO05D004304 1.8e-26 122.1 74 82.4
Oeu002376.1 Olea europaea HOM05D003756 ORTHO05D004304 2.4e-26 121.7 64 87.5
Atru.chr8.1542 Acer truncatum HOM05D003756 ORTHO05D004304 3.1e-26 121.3 70 82.9
CDE06G0646 Ceratophyllum demersum HOM05D003756 ORTHO05D004304 3.1e-26 121.3 74 81.1
Phvul.001G190200 Phaseolus vulgaris HOM05D003756 ORTHO05D004304 3.1e-26 121.3 64 85.9
THA.LOC104799762 Tarenaya hassleriana HOM05D003756 ORTHO05D004304 4.0e-26 120.9 74 81.1
TWI53G0293 Tripterygium wilfordii HOM05D003756 ORTHO05D004304 4.0e-26 120.9 82 69.5
TAR623G0741 Trochodendron aralioides HOM05D003756 ORTHO05D004304 4.0e-26 120.9 71 83.1
HPP92_025135 Vanilla planifolia HOM05D003756 ORTHO05D004304 4.0e-26 120.9 66 84.8
AL5G33490 Arabidopsis lyrata HOM05D003756 ORTHO05D004304 5.3e-26 120.6 69 81.2
AT3G52730 Arabidopsis thaliana HOM05D003756 ORTHO05D004304 5.3e-26 120.6 69 81.2
Carub.0005s1918 Capsella rubella HOM05D003756 ORTHO05D004304 5.3e-26 120.6 69 81.2
CARHR162600 Cardamine hirsuta HOM05D003756 ORTHO05D004304 5.3e-26 120.6 69 81.2
PGSC0003DMG400005923 Solanum tuberosum HOM05D003756 ORTHO05D004304 9.0e-26 119.8 63 87.3
Actinidia35464 Actinidia chinensis HOM05D003756 ORTHO05D004304 1.5e-25 119.0 69 81.2
Cc01_g09260 Coffea canephora HOM05D003756 ORTHO05D004304 1.5e-25 119.0 66 78.8
Atru.chr8.1539 Acer truncatum HOM05D003756 ORTHO05D004304 2.0e-25 118.6 70 80.0
Actinidia07248 Actinidia chinensis HOM05D003756 ORTHO05D004304 2.0e-25 118.6 72 80.6
THA.LOC104823490 Tarenaya hassleriana HOM05D003756 ORTHO05D004304 3.4e-25 117.9 69 79.7
Ah.08g210600 Amaranthus hybridus HOM05D001616 ORTHO05D003701 4.4e-25 117.5 95 63.2
CAN.G919.30 Capsicum annuum HOM05D003756 ORTHO05D004304 1.3e-24 115.9 61 82.0
TAR633G1678 Trochodendron aralioides HOM05D003756 ORTHO05D004304 3.8e-24 114.4 99 58.6
arahy.Tifrunner.gnm1.ann1.N59HKK Arachis hypogaea HOM05D003756 ORTHO05D004304 4.9e-24 114.0 96 62.5
Nitab4.5_0001216g0110 Nicotiana tabacum HOM05D003756 ORTHO05D004304 4.9e-24 114.0 89 68.5
Thhalv10010889m.g Eutrema salsugineum HOM05D003756 ORTHO05D004304 6.4e-24 113.6 63 81.0
Zm00001eb093400 Zea mays HOM05D003756 ORTHO05D004304 8.4e-24 113.2 63 77.8
CAN.G1039.16 Capsicum annuum HOM05D003756 ORTHO05D004304 1.1e-23 112.8 74 75.7
BcaB01g00346 Brassica carinata HOM05D003756 ORTHO05D004304 1.9e-23 112.1 62 82.3
BcaC07g39638 Brassica carinata HOM05D003756 ORTHO05D004304 1.9e-23 112.1 62 82.3
A09p45820 Brassica napus HOM05D003756 ORTHO05D004304 1.9e-23 112.1 62 82.3
C08p28010 Brassica napus HOM05D003756 ORTHO05D004304 1.9e-23 112.1 62 82.3
BolC8t50413H Brassica oleracea HOM05D003756 ORTHO05D004304 1.9e-23 112.1 62 82.3
BraA09t40043Z Brassica rapa HOM05D003756 ORTHO05D004304 1.9e-23 112.1 62 82.3
BcaC02g09226 Brassica carinata HOM05D003756 ORTHO05D004304 2.4e-23 111.7 63 81.0
C04p40240 Brassica napus HOM05D003756 ORTHO05D004304 2.4e-23 111.7 63 81.0
BolC4t25600H Brassica oleracea HOM05D003756 ORTHO05D004304 2.4e-23 111.7 63 81.0
BcaB02g08557 Brassica carinata HOM05D003756 ORTHO05D004304 3.2e-23 111.3 63 79.4
A04p06750 Brassica napus HOM05D003756 ORTHO05D004304 3.2e-23 111.3 63 79.4
Dinv42555 Davidia involucrata HOM05D003756 ORTHO05D004304 3.2e-23 111.3 67 77.6
Sp5g09600 Schrenkiella parvula HOM05D003756 ORTHO05D004304 3.2e-23 111.3 63 79.4
BcaB02g07820 Brassica carinata HOM05D003756 ORTHO05D004304 5.4e-23 110.5 63 79.4
Os05g0400400 Oryza sativa ssp. japonica HOM05D003756 ORTHO05D004304 7.1e-23 110.2 61 77.0
Zm00001eb196190 Zea mays HOM05D003756 ORTHO05D004304 7.1e-23 110.2 63 76.2
Glyma.19G194915 Glycine max HOM05D003756 ORTHO05D004304 1.2e-22 109.4 95 60.0
MD16G1126500 Malus domestica HOM05D003756 ORTHO05D004304 1.2e-22 109.4 66 78.8
unitig_747.g21944 Utricularia gibba HOM05D003756 ORTHO05D004304 1.6e-22 109.0 74 71.6
CAN.G28765.1 Capsicum annuum HOM05D003756 ORTHO05D004304 2.7e-22 108.2 75 70.7
Duzib093G1183 Durio zibethinus HOM05D003756 ORTHO05D004304 1.0e-21 106.3 57 87.7
HanXRQChr14g0451601 Helianthus annuus HOM05D003756 ORTHO05D004304 1.3e-21 105.9 67 76.1
COL.COLO4_29737 Corchorus olitorius HOM05D003756 ORTHO05D004304 1.7e-21 105.5 62 82.3
SalBow5G5426 Salvia bowleyana HOM05D003756 ORTHO05D004304 1.7e-21 105.5 74 68.9
Migut.D02449 Erythranthe guttata HOM05D003756 ORTHO05D004304 2.3e-21 105.1 69 71.0
Nitab4.5_0006996g0050 Nicotiana tabacum HOM05D003756 ORTHO05D004304 3.0e-21 104.8 57 89.5
EL10Ac7g16918 Beta vulgaris HOM05D003756 ORTHO05D004304 8.7e-21 103.2 55 83.6
Nitab4.5_0000132g0030 Nicotiana tabacum HOM05D003756 ORTHO05D004304 8.7e-21 103.2 78 67.9
PSO384G4395 Papaver somniferum HOM05D003756 ORTHO05D004304 1.1e-20 102.8 76 67.1
Rhsim01G0205100 Rhododendron simsii HOM05D003756 ORTHO05D004304 1.9e-20 102.1 125 48.0
PSO339G6416 Papaver somniferum HOM05D003756 ORTHO05D004304 2.5e-20 101.7 64 73.4
CsaV3_6G040700 Cucumis sativus L. HOM05D003756 ORTHO05D004304 3.3e-20 101.3 55 83.6
SEGI_29748 Sequoiadendron giganteum HOM05D003756 ORTHO05D004304 3.3e-20 101.3 58 75.9
TPR.G19525 Trifolium pratense HOM05D003756 ORTHO05D004304 5.6e-20 100.5 57 84.2
Hund19934 Selenicereus undatus HOM05D003756 ORTHO05D004304 7.3e-20 100.1 57 82.5
ECA238G2045 Erigeron canadensis HOM05D003756 ORTHO05D004304 1.3e-19 99.4 63 71.4
Oeu035551.2 Olea europaea HOM05D003756 ORTHO05D004304 1.3e-19 99.4 53 84.9
Sc02g0000240 Simmondsia chinensis HOM05D003756 ORTHO05D004304 1.6e-19 99.0 57 84.2
Sabra09G0117900 Salix brachista HOM05D003756 ORTHO05D004304 2.8e-19 98.2 54 79.6
Rhsim13G0111400 Rhododendron simsii HOM05D003756 ORTHO05D004304 3.6e-19 97.8 89 53.9
FAN13G0109 Fragaria x ananassa HOM05D003756 ORTHO05D004304 8.1e-19 96.7 58 77.6
Mapoly0074s0034 Marchantia polymorpha HOM05D003756 ORTHO05D004304 8.1e-19 96.7 66 63.6
PGSC0003DMG400026342 Solanum tuberosum HOM05D003756 ORTHO05D004304 1.1e-18 96.3 66 72.7
Actinidia37081 Actinidia chinensis HOM05D003756 ORTHO05D004304 1.4e-18 95.9 54 85.2
Ciclev10013189m.g Citrus clementina HOM05D003756 ORTHO05D004304 4.0e-18 94.4 53 79.2
Hma1.2p1_0578F.1_g182500 Hydrangea macrophylla HOM05D003756 ORTHO05D004304 6.9e-18 93.6 55 80.0
Dinv29482 Davidia involucrata HOM05D003756 ORTHO05D004304 9.0e-18 93.2 54 81.5
ATR0796G241 Amborella trichopoda HOM05D003756 ORTHO05D004304 3.4e-17 91.3 48 83.3
Nitab4.5_0000963g0100 Nicotiana tabacum HOM05D003756 ORTHO05D004304 3.8e-16 87.8 57 73.7
Sp4g18470 Schrenkiella parvula HOM05D003756 ORTHO05D004304 3.8e-16 87.8 52 76.9
FAN04G2029 Fragaria x ananassa HOM05D003756 ORTHO05D004304 1.4e-15 85.9 58 72.4
FAN21G3678 Fragaria x ananassa HOM05D002333 ORTHO05D004304 2.4e-15 85.1 45 93.3
FAN04G1204 Fragaria x ananassa HOM05D003756 ORTHO05D004304 3.2e-15 84.7 58 70.7
Pp3c7_2560 Physcomitrium patens HOM05D003756 ORTHO05D004304 4.2e-15 84.3 62 54.8
Pp3c11_23610 Physcomitrium patens HOM05D003756 ORTHO05D004304 1.6e-14 82.4 62 51.6
SalBow6G3312 Salvia bowleyana HOM05D003756 ORTHO05D004304 1.6e-14 82.4 57 66.7
SEGI_32530 Sequoiadendron giganteum HOM05D003756 ORTHO05D004304 1.6e-14 82.4 52 73.1
BraA04t16378Z Brassica rapa HOM05D003756 ORTHO05D004304 2.1e-14 82.0 49 73.5
CBR_g21065 Chara braunii HOM05D003756 ORTHO05D004304 2.1e-14 82.0 63 60.3
Hma1.2p1_0084F.1_g043780 Hydrangea macrophylla HOM05D003756 ORTHO05D004304 4.6e-14 80.9 54 66.7
FAN13G3094 Fragaria x ananassa HOM05D003756 ORTHO05D004304 7.9e-14 80.1 46 82.6
PSO478G0414 Papaver somniferum HOM05D003756 ORTHO05D004304 1.3e-13 79.3 74 51.4
MELO3C032936.2 Cucumis melo HOM05D003756 ORTHO05D004304 3.0e-13 78.2 40 85.0
RcHm_v2.0_Chr7g0240761 Rosa chinensis HOM05D003756 ORTHO05D004304 1.3e-11 72.8 39 84.6
Dinv33579 Davidia involucrata HOM05D003756 ORTHO05D004304 4.8e-11 70.9 38 78.9
Nn2g14157 Nelumbo nucifera HOM05D003756 ORTHO05D004304 5.8e-09 63.9 34 79.4
MCO16G664 Micromonas commoda HOM05D003756 ORTHO05D004304 1.9e-07 58.9 51 52.9
Aa31LG10G7740 Aethionema arabicum HOM05D003756 ORTHO05D004304 3.2e-07 58.2 36 72.2
PRCOL_00006894 Prasinoderma coloniale HOM05D003756 ORTHO05D004304 5.5e-07 57.4 54 46.3


User provided reference genes

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