Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN14G1808 Fragaria x ananassa HOM05D003833 ORTHO05D004209 2.2e-152 542.3 287 100.0
FvH4_6g25150 Fragaria vesca HOM05D003833 ORTHO05D004209 2.7e-142 508.8 287 95.5
FAN05G1327 Fragaria x ananassa HOM05D003833 ORTHO05D004209 2.3e-141 505.8 287 95.1
FAN05G4135 Fragaria x ananassa HOM05D003833 ORTHO05D004209 2.3e-141 505.8 287 95.1
FAN02G2058 Fragaria x ananassa HOM05D003833 ORTHO05D004209 5.5e-140 501.1 287 94.4
RcHm_v2.0_Chr1g0334171 Rosa chinensis HOM05D003833 ORTHO05D004209 2.8e-136 488.8 287 92.3
MD12G1094200 Malus domestica HOM05D003833 ORTHO05D004209 1.4e-127 459.9 287 84.7
MD14G1084400 Malus domestica HOM05D003833 ORTHO05D004209 3.2e-127 458.8 287 84.3
Prupe.7G045500 Prunus persica HOM05D003833 ORTHO05D004209 6.0e-126 454.5 286 83.9
Manes.09G008001 Manihot esculenta HOM05D003833 ORTHO05D004209 4.3e-124 448.4 287 80.8
CANSAT64G1401 Cannabis sativa HOM05D003833 ORTHO05D004209 4.7e-123 444.9 284 81.7
Haze_19732 Corylus avellana HOM05D003833 ORTHO05D004209 4.7e-123 444.9 287 81.9
Cpa.g.sc49.96 Carica papaya HOM05D003833 ORTHO05D004209 1.4e-122 443.4 287 82.2
Cfa016709 Carpinus fangiana HOM05D003833 ORTHO05D004209 3.1e-122 442.2 287 80.8
QL07p007726 Quercus lobata HOM05D003833 ORTHO05D004209 2.6e-121 439.1 286 79.4
Lj1A1105T22 Lonicera japonica HOM05D003833 ORTHO05D004209 2.9e-120 435.6 282 80.9
Thecc.05G140900 Theobroma cacao HOM05D003833 ORTHO05D004209 1.9e-119 433.0 288 80.6
Potri.006G042600 Populus trichocarpa HOM05D003833 ORTHO05D004209 2.1e-118 429.5 285 80.7
Sabra06G0028900 Salix brachista HOM05D003833 ORTHO05D004209 2.1e-118 429.5 285 80.4
CiPaw.09G044700 Carya illinoinensis HOM05D003833 ORTHO05D004209 2.7e-118 429.1 287 79.1
Duzib093G1609 Durio zibethinus HOM05D003833 ORTHO05D004209 2.7e-118 429.1 285 81.1
Sed0017232 Sechium edule HOM05D003833 ORTHO05D004209 7.8e-118 427.6 285 80.0
Atru.chr1.1452 Acer truncatum HOM05D003833 ORTHO05D004209 1.0e-117 427.2 288 78.5
Gohir.A07G024700 Gossypium hirsutum HOM05D003833 ORTHO05D004209 1.7e-117 426.4 288 78.5
Atru.chr1.1464 Acer truncatum HOM05D003833 ORTHO05D004209 3.0e-117 425.6 288 78.1
ClCG04G004210 Citrullus lanatus HOM05D003833 ORTHO05D004209 5.1e-117 424.9 285 79.3
Dinv08489 Davidia involucrata HOM05D003833 ORTHO05D004209 8.6e-117 424.1 282 78.4
Migut.K00123 Erythranthe guttata HOM05D003833 ORTHO05D004209 1.9e-116 422.9 289 77.5
Lalb_Chr14g0365931 Lupinus albus HOM05D003833 ORTHO05D004209 4.3e-116 421.8 284 78.2
Ca_08401_v3 Cicer arietinum L. HOM05D003833 ORTHO05D004209 5.6e-116 421.4 284 77.8
Lsat_1_v5_gn_4_129320 Lactuca sativa HOM05D003833 ORTHO05D004209 9.5e-116 420.6 282 79.4
CSS0041120 Camellia sinensis var. sinensis HOM05D003833 ORTHO05D004209 1.2e-115 420.2 282 78.0
Psat3g078000 Pisum sativum HOM05D003833 ORTHO05D004209 1.2e-115 420.2 284 77.1
PGR042G2932 Punica granatum HOM05D003833 ORTHO05D004209 1.2e-115 420.2 288 78.5
Gorai.001G029600 Gossypium raimondii HOM05D003833 ORTHO05D004209 2.1e-115 419.5 288 77.4
Lj1g0026826 Lotus japonicus HOM05D003833 ORTHO05D004209 2.1e-115 419.5 284 76.8
MSTRG.10798 Avicennia marina HOM05D003833 ORTHO05D004209 4.7e-115 418.3 282 79.4
MELO3C019039.2 Cucumis melo HOM05D003833 ORTHO05D004209 4.7e-115 418.3 285 77.5
CsaV3_4G027860 Cucumis sativus L. HOM05D003833 ORTHO05D004209 4.7e-115 418.3 285 77.5
Lj2A394G34 Lonicera japonica HOM05D003833 ORTHO05D004209 4.7e-115 418.3 282 77.7
Ciclev10005607m.g Citrus clementina HOM05D003833 ORTHO05D004209 6.2e-115 417.9 285 78.6
Gohir.D07G028300 Gossypium hirsutum HOM05D003833 ORTHO05D004209 6.2e-115 417.9 288 77.1
SGA_v2.0_scaffold94G28522 Striga asiatica HOM05D003833 ORTHO05D004209 6.2e-115 417.9 279 78.1
Actinidia39173 Actinidia chinensis HOM05D003833 ORTHO05D004209 8.1e-115 417.5 278 78.1
TPR.G9312 Trifolium pratense HOM05D003833 ORTHO05D004209 8.1e-115 417.5 285 76.8
MSTRG.15651 Avicennia marina HOM05D003833 ORTHO05D004209 1.8e-114 416.4 284 77.5
PGR142G2709 Punica granatum HOM05D003833 ORTHO05D004209 4.0e-114 415.2 288 77.1
arahy.Tifrunner.gnm1.ann1.C9KHWR Arachis hypogaea HOM05D003833 ORTHO05D004209 5.2e-114 414.8 285 76.5
Sed0027268 Sechium edule HOM05D003833 ORTHO05D004209 8.9e-114 414.1 284 77.1
DCAR_020545 Daucus carota HOM05D003833 ORTHO05D004209 1.5e-113 413.3 282 77.0
HanXRQChr09g0266491 Helianthus annuus HOM05D003833 ORTHO05D004209 1.5e-113 413.3 282 76.6
TWI53G1459 Tripterygium wilfordii HOM05D003833 ORTHO05D004209 2.6e-113 412.5 285 76.5
COL.COLO4_33945 Corchorus olitorius HOM05D003833 ORTHO05D004209 3.4e-113 412.1 288 76.7
ECA232G1919 Erigeron canadensis HOM05D003833 ORTHO05D004209 4.4e-113 411.8 282 78.4
Solyc02g068640.3 Solanum lycopersicum HOM05D003833 ORTHO05D004209 4.4e-113 411.8 282 76.2
Sopen02g017810 Solanum pennellii HOM05D003833 ORTHO05D004209 4.4e-113 411.8 282 76.2
Aqoxy2G03781 Aquilegia oxysepala HOM05D003833 ORTHO05D004209 7.5e-113 411.0 285 75.8
Aqoxy2G00325 Aquilegia oxysepala HOM05D003833 ORTHO05D004209 2.2e-112 409.5 285 75.1
PGSC0003DMG400010441 Solanum tuberosum HOM05D003833 ORTHO05D004209 2.2e-112 409.5 279 76.3
EL10Ac3g07192 Beta vulgaris HOM05D003833 ORTHO05D004209 4.9e-112 408.3 282 75.9
Medtr7g090160 Medicago truncatula HOM05D003833 ORTHO05D004209 4.9e-112 408.3 285 74.7
Glyma.03G129100 Glycine max HOM05D003833 ORTHO05D004209 6.4e-112 407.9 285 74.7
AUR62030362 Chenopodium quinoa HOM05D003833 ORTHO05D004209 8.3e-112 407.5 282 75.5
Glyma.19G131500 Glycine max HOM05D003833 ORTHO05D004209 1.4e-111 406.8 285 75.4
Phvul.001G124300 Phaseolus vulgaris HOM05D003833 ORTHO05D004209 1.4e-111 406.8 285 75.1
TAR623G1635 Trochodendron aralioides HOM05D003833 ORTHO05D004209 1.4e-111 406.8 284 75.0
Dinv34388 Davidia involucrata HOM05D003833 ORTHO05D004209 2.4e-111 406.0 299 73.2
Oeu029492.1 Olea europaea HOM05D003833 ORTHO05D004209 4.1e-111 405.2 291 74.9
VMungo1383G2371 Vigna mungo HOM05D003833 ORTHO05D004209 5.4e-111 404.8 285 74.7
GSVIVG01033588001 Vitis vinifera HOM05D003833 ORTHO05D004209 7.1e-111 404.4 282 75.5
arahy.Tifrunner.gnm1.ann1.LP5CTB Arachis hypogaea HOM05D003833 ORTHO05D004209 1.6e-110 403.3 315 70.5
Ah.04g151120 Amaranthus hybridus HOM05D003833 ORTHO05D004209 2.1e-110 402.9 283 74.9
Sc13g0001320 Simmondsia chinensis HOM05D003833 ORTHO05D004209 1.7e-109 399.8 282 75.9
Peaxi162Scf00149g00116 Petunia axillaris HOM05D003833 ORTHO05D004209 5.1e-109 398.3 293 72.4
Sc13g0001340 Simmondsia chinensis HOM05D003833 ORTHO05D004209 5.1e-109 398.3 282 76.2
Hund24632 Selenicereus undatus HOM05D003833 ORTHO05D004209 8.6e-109 397.5 287 71.8
Carub.0006s1298 Capsella rubella HOM05D003833 ORTHO05D004209 5.6e-108 394.8 288 72.6
AUR62040845 Chenopodium quinoa HOM05D003833 ORTHO05D004209 1.6e-107 393.3 282 74.5
THA.LOC104816595 Tarenaya hassleriana HOM05D003833 ORTHO05D004209 1.6e-107 393.3 290 72.8
PSO210G1377 Papaver somniferum HOM05D003833 ORTHO05D004209 2.1e-107 392.9 287 71.1
A10p23880 Brassica napus HOM05D003833 ORTHO05D004209 2.8e-107 392.5 288 72.6
Thhalv10014353m.g Eutrema salsugineum HOM05D003833 ORTHO05D004209 2.8e-107 392.5 288 73.3
BcaB08g36945 Brassica carinata HOM05D003833 ORTHO05D004209 3.6e-107 392.1 288 72.6
PSO832G0079 Papaver somniferum HOM05D003833 ORTHO05D004209 3.6e-107 392.1 287 71.1
Sp6g29240 Schrenkiella parvula HOM05D003833 ORTHO05D004209 3.6e-107 392.1 288 72.6
BolC9t59073H Brassica oleracea HOM05D003833 ORTHO05D004209 4.7e-107 391.7 288 72.2
C09p62360 Brassica napus HOM05D003833 ORTHO05D004209 6.2e-107 391.3 288 72.2
BcaC04g19007 Brassica carinata HOM05D003833 ORTHO05D004209 1.4e-106 390.2 288 71.9
BraA10t44452Z Brassica rapa HOM05D003833 ORTHO05D004209 2.4e-106 389.4 288 72.2
CARHR198510 Cardamine hirsuta HOM05D003833 ORTHO05D004209 3.1e-106 389.0 288 71.5
AL6G25600 Arabidopsis lyrata HOM05D003833 ORTHO05D004209 5.2e-106 388.3 288 71.5
AT5G14800 Arabidopsis thaliana HOM05D003833 ORTHO05D004209 5.2e-106 388.3 288 71.9
vmacro07822 Vaccinium macrocarpon HOM05D003833 ORTHO05D004209 2.6e-105 386.0 366 60.9
A03p06820 Brassica napus HOM05D003833 ORTHO05D004209 4.4e-105 385.2 288 70.8
BcaB01g05096 Brassica carinata HOM05D003833 ORTHO05D004209 1.7e-104 383.3 288 70.5
C03p07820 Brassica napus HOM05D003833 ORTHO05D004209 1.7e-104 383.3 288 70.5
BolC3t13281H Brassica oleracea HOM05D003833 ORTHO05D004209 1.7e-104 383.3 288 70.5
PSO782G0909 Papaver somniferum HOM05D003833 ORTHO05D004209 1.9e-103 379.8 282 69.5
BraA03t10007Z Brassica rapa HOM05D003833 ORTHO05D004209 4.2e-103 378.6 292 69.9
Aa31LG11G14650 Aethionema arabicum HOM05D003833 ORTHO05D004209 9.2e-103 377.5 330 64.2
Nitab4.5_0003379g0050 Nicotiana tabacum HOM05D003833 ORTHO05D004209 2.1e-102 376.3 345 62.3
SHI05043 Sapria himalayana HOM05D003833 ORTHO05D004209 1.5e-100 370.2 276 71.7
Ah.13g077020 Amaranthus hybridus HOM05D003833 ORTHO05D004209 2.5e-100 369.4 296 66.9
Nn7g36480 Nelumbo nucifera HOM05D003833 ORTHO05D004209 3.3e-100 369.0 282 69.9
Nitab4.5_0006282g0020 Nicotiana tabacum HOM05D003833 ORTHO05D004209 2.1e-99 366.3 332 63.0
MBI13_g29520_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 3.6e-99 365.5 279 69.5
unitig_26.g8850 Utricularia gibba HOM05D003833 ORTHO05D004209 1.2e-97 360.5 258 74.4
Cc06_g18620 Coffea canephora HOM05D003833 ORTHO05D004209 2.6e-97 359.4 267 70.0
ATR0721G010 Amborella trichopoda HOM05D003833 ORTHO05D004209 4.4e-97 358.6 279 67.7
Os01g0948400 Oryza sativa ssp. japonica HOM05D003833 ORTHO05D004209 1.4e-95 353.6 280 65.7
CDE02G3693 Ceratophyllum demersum HOM05D003833 ORTHO05D004209 4.2e-95 352.1 282 65.6
CDE09G0749 Ceratophyllum demersum HOM05D003833 ORTHO05D004209 5.4e-95 351.7 282 65.6
HPP92_001015 Vanilla planifolia HOM05D003833 ORTHO05D004209 3.0e-93 345.9 276 64.9
RhsimUnG0217200 Rhododendron simsii HOM05D003833 ORTHO05D004209 8.1e-91 337.8 485 46.2
Rhsim03G0034800 Rhododendron simsii HOM05D003833 ORTHO05D004209 2.4e-90 336.3 485 46.0
Prupe.7G045400 Prunus persica HOM05D003833 ORTHO05D004209 4.5e-89 332.0 280 60.0
SEGI_35199 Sequoiadendron giganteum HOM05D003833 ORTHO05D004209 7.6e-89 331.3 276 63.0
MD12G1091800 Malus domestica HOM05D003833 ORTHO05D004209 7.9e-86 321.2 285 58.6
Eucgr.K01625 Eucalyptus grandis HOM05D003833 ORTHO05D004209 3.0e-85 319.3 221 77.8
FAN10G2875 Fragaria x ananassa HOM05D005759 ORTHO05D007172 8.7e-85 317.8 298 66.8
Zm00001eb141220 Zea mays HOM05D003833 ORTHO05D004209 1.5e-81 307.0 282 59.6
BolC3t20513H Brassica oleracea HOM05D003833 ORTHO05D004209 4.5e-81 305.4 266 61.7
Mapoly0029s0092 Marchantia polymorpha HOM05D003833 ORTHO05D004209 6.4e-80 301.6 276 58.7
BolC4t23181H Brassica oleracea HOM05D003833 ORTHO05D004209 1.8e-77 293.5 266 61.3
C03p82400 Brassica napus HOM05D003833 ORTHO05D004209 1.1e-76 290.8 293 56.0
AagrBONN_evm.TU.Sc2ySwM_368.1806 Anthoceros agrestis HOM05D003833 ORTHO05D004209 2.5e-76 289.7 284 54.2
AagrBONN_evm.TU.Sc2ySwM_368.156 Anthoceros agrestis HOM05D003833 ORTHO05D004209 5.6e-76 288.5 274 55.8
SMO337G0103 Selaginella moellendorffii HOM05D003833 ORTHO05D004209 3.7e-75 285.8 274 55.8
C03p82420 Brassica napus HOM05D003833 ORTHO05D004209 6.2e-75 285.0 293 54.9
Duzib056G0002 Durio zibethinus HOM05D003833 ORTHO05D004209 6.2e-75 285.0 270 62.6
BcaC02g10661 Brassica carinata HOM05D003833 ORTHO05D004209 8.2e-75 284.6 269 60.2
BcaC06g33558 Brassica carinata HOM05D003833 ORTHO05D004209 1.8e-74 283.5 293 55.3
BolC4t24169H Brassica oleracea HOM05D003833 ORTHO05D004209 1.8e-74 283.5 270 60.4
Pp3c10_15650 Physcomitrium patens HOM05D003833 ORTHO05D004209 6.9e-74 281.6 276 55.1
BcaC02g11392 Brassica carinata HOM05D003833 ORTHO05D004209 4.5e-73 278.9 293 55.3
Dinv03868 Davidia involucrata HOM05D003833 ORTHO05D004209 4.9e-72 275.4 164 84.1
C04p16080 Brassica napus HOM05D003833 ORTHO05D004209 2.7e-70 269.6 266 58.6
CBR_g16006 Chara braunii HOM05D003833 ORTHO05D004209 3.9e-69 265.8 283 51.6
RcHm_v2.0_Chr2g0125021 Rosa chinensis HOM05D003833 ORTHO05D004209 8.2e-67 258.1 140 94.3
Cre03.g154550 Chlamydomonas reinhardtii HOM05D003833 ORTHO05D004209 5.9e-65 251.9 285 47.7
C06p25140 Brassica napus HOM05D003833 ORTHO05D004209 1.1e-63 247.7 292 52.1
C04p26360 Brassica napus HOM05D003833 ORTHO05D004209 9.4e-63 244.6 267 54.3
BolC6t37672H Brassica oleracea HOM05D003833 ORTHO05D004209 1.2e-62 244.2 237 59.5
MCO05G631 Micromonas commoda HOM05D003833 ORTHO05D004209 1.8e-58 230.3 277 48.0
Rhsim13G0081800 Rhododendron simsii HOM05D003833 ORTHO05D004209 1.2e-57 227.6 282 50.0
FAN06G3481 Fragaria x ananassa HOM05D003833 ORTHO05D004209 6.7e-53 211.8 166 75.3
BcaC02g10122 Brassica carinata HOM05D003833 ORTHO05D004209 9.7e-52 208.0 262 47.3
BolC3t20511H Brassica oleracea HOM05D003833 ORTHO05D004209 6.3e-51 205.3 131 79.4
BcaC08g44899 Brassica carinata HOM05D003833 ORTHO05D004209 4.5e-49 199.1 280 48.2
Eucgr.K01616 Eucalyptus grandis HOM05D003833 ORTHO05D004209 8.5e-48 194.9 136 75.7
SEGI_40635 Sequoiadendron giganteum HOM05D003833 ORTHO05D004209 1.5e-44 184.1 137 69.3
MD12G1094100 Malus domestica HOM05D003833 ORTHO05D004209 1.1e-42 177.9 138 64.5
MBI03_g45406_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 3.1e-42 176.4 148 63.5
MCO04G012 Micromonas commoda HOM05D003833 ORTHO05D004209 3.1e-42 176.4 415 34.9
TAR623G0480 Trochodendron aralioides HOM05D003833 ORTHO05D004209 1.1e-39 167.9 96 88.5
PRCOL_00005946 Prasinoderma coloniale HOM05D003833 ORTHO05D004209 1.2e-38 164.5 223 46.6
MBI03_g17131_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 1.8e-37 160.6 123 66.7
MBI09_g02151_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 2.6e-36 156.8 101 79.2
Nn1g08168 Nelumbo nucifera HOM05D003833 ORTHO05D004209 2.7e-30 136.7 117 60.7
RcHm_v2.0_Chr2g0125031 Rosa chinensis HOM05D003833 ORTHO05D004209 3.6e-30 136.3 151 58.9
FvH4_7g06311 Fragaria vesca HOM05D003833 ORTHO05D004209 2.2e-27 127.1 73 94.5
Haze_27356 Corylus avellana HOM05D003833 ORTHO05D004209 1.4e-26 124.4 296 30.4
Medtr1046s0010 Medicago truncatula HOM05D003833 ORTHO05D004209 4.1e-26 122.9 274 31.4
Haze_26946 Corylus avellana HOM05D003833 ORTHO05D004209 5.4e-26 122.5 275 32.0
MD12G1091600 Malus domestica HOM05D003833 ORTHO05D004209 5.5e-23 112.5 67 82.1
Aqoxy3G03819 Aquilegia oxysepala HOM05D003833 ORTHO05D004209 2.6e-20 103.6 172 43.6
FvH4_7g06312 Fragaria vesca HOM05D003833 ORTHO05D004209 1.3e-19 101.3 53 96.2
BolC4t24812H Brassica oleracea HOM05D003833 ORTHO05D004209 2.7e-17 93.6 82 59.8
BcaC02g08088 Brassica carinata HOM05D003833 ORTHO05D004209 7.8e-17 92.0 52 88.5
C04p17110 Brassica napus HOM05D003833 ORTHO05D004209 1.0e-16 91.7 52 86.5
BolC4t23262H Brassica oleracea HOM05D003833 ORTHO05D004209 1.0e-16 91.7 52 86.5
BcaNung06051 Brassica carinata HOM05D003833 ORTHO05D004209 1.3e-16 91.3 58 74.1
CBR_g37250 Chara braunii HOM05D003833 ORTHO05D004209 1.7e-16 90.9 69 62.3
MBI10_g20272_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 1.7e-16 90.9 59 78.0
BolC8t47752H Brassica oleracea HOM05D003833 ORTHO05D004209 2.3e-16 90.5 52 86.5
Oeu050503.1 Olea europaea HOM05D003833 ORTHO05D004209 3.9e-16 89.7 71 66.2
BcaC02g11310 Brassica carinata HOM05D003833 ORTHO05D004209 5.0e-16 89.4 52 86.5
C08p09060 Brassica napus HOM05D003833 ORTHO05D004209 4.3e-15 86.3 50 84.0
Gohir.D06G163101 Gossypium hirsutum HOM05D002585 ORTHO05D002917 4.7e-14 82.8 72 59.7
Gorai.011G171800 Gossypium raimondii HOM05D002585 ORTHO05D002917 4.7e-14 82.8 72 59.7
Gohir.D13G165733 Gossypium hirsutum HOM05D002585 ORTHO05D002917 5.2e-13 79.3 72 56.9
Gorai.008G052500 Gossypium raimondii HOM05D002585 ORTHO05D002917 1.2e-12 78.2 72 58.3
SGA_v2.0_scaffold44G16671 Striga asiatica HOM05D003833 ORTHO05D004209 7.0e-10 68.9 64 54.7
SalBow6G3161 Salvia bowleyana HOM05D021775 ORTHO05D004209 3.3e-07 60.1 40 75.0
CAN.G102.1 Capsicum annuum HOM05D000541 ORTHO05D000137 5.6e-07 59.3 52 59.6


User provided reference genes

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