Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN14G1768 Fragaria x ananassa HOM05D009201 ORTHO05D005238 1.4e-210 736.1 364 100.0
FvH4_6g07632 Fragaria vesca HOM05D009201 ORTHO05D005238 2.2e-181 639.0 369 89.4
FAN08G0305 Fragaria x ananassa HOM05D009201 ORTHO05D005238 1.3e-149 533.5 405 72.3
FvH4_3g25832 Fragaria vesca HOM05D009201 ORTHO05D005238 5.5e-103 378.6 416 57.0
FvH4_4g16721 Fragaria vesca HOM05D009201 ORTHO05D005238 9.4e-87 324.7 428 49.3
RcHm_v2.0_Chr1g0320861 Rosa chinensis HOM05D009201 ORTHO05D005238 1.4e-85 320.9 436 46.6
FvH4_3g26062 Fragaria vesca HOM05D009201 ORTHO05D005238 1.3e-75 287.7 396 45.7
FAN12G1939 Fragaria x ananassa HOM05D009201 ORTHO05D005238 7.2e-71 271.9 304 53.9
FAN17G0650 Fragaria x ananassa HOM05D009201 ORTHO05D005238 7.8e-49 198.7 124 81.5
FvH4_4g08041 Fragaria vesca HOM05D009201 ORTHO05D005238 3.9e-48 196.4 364 39.8
FAN08G2279 Fragaria x ananassa HOM05D009201 ORTHO05D005238 7.3e-47 192.2 383 37.6
FAN22G0097 Fragaria x ananassa HOM05D009201 ORTHO05D005238 4.9e-43 179.5 368 37.2
RcHm_v2.0_Chr3g0472781 Rosa chinensis HOM05D009201 ORTHO05D005238 8.3e-43 178.7 343 38.2
FAN13G1485 Fragaria x ananassa HOM05D009201 ORTHO05D005238 1.0e-40 171.8 188 49.5
FvH4_6g26370 Fragaria vesca HOM05D009201 ORTHO05D035607 1.7e-40 171.0 394 36.5
FAN04G0512 Fragaria x ananassa HOM05D009201 ORTHO05D005238 1.7e-35 154.5 157 52.9
RcHm_v2.0_Chr2g0109251 Rosa chinensis HOM05D009201 ORTHO05D005238 3.7e-35 153.3 293 36.5
FAN18G1345 Fragaria x ananassa HOM05D009201 ORTHO05D005238 8.3e-35 152.1 383 34.5
FAN23G1579 Fragaria x ananassa HOM05D009201 ORTHO05D005238 2.3e-32 144.1 182 43.4
FAN09G4175 Fragaria x ananassa HOM05D009201 ORTHO05D005238 1.5e-28 131.3 371 32.1
FAN19G3080 Fragaria x ananassa HOM05D009150 ORTHO05D005238 2.1e-25 120.9 217 34.6
FAN03G2305 Fragaria x ananassa HOM05D009150 ORTHO05D005238 1.1e-23 115.2 246 29.7
FAN17G2291 Fragaria x ananassa HOM05D009201 ORTHO05D029658 4.0e-21 106.7 235 33.2
FvH4_4g21881 Fragaria vesca HOM05D009201 ORTHO05D005238 2.0e-20 104.4 146 46.6
FvH4_5g23680 Fragaria vesca HOM05D018539 ORTHO05D005238 7.6e-20 102.4 184 33.7
FvH4_2g13681 Fragaria vesca HOM05D009201 ORTHO05D005238 1.7e-19 101.3 91 59.3
FvH4_5g38943 Fragaria vesca HOM05D007432 ORTHO05D005238 3.8e-19 100.1 121 47.9
FvH4_2g07920 Fragaria vesca HOM05D007432 ORTHO05D005238 2.1e-17 94.4 122 42.6
FvH4_3g20011 Fragaria vesca HOM05D018539 ORTHO05D025542 4.6e-17 93.2 219 32.0
RcHm_v2.0_Chr7g0238801 Rosa chinensis HOM05D009201 ORTHO05D005238 4.6e-17 93.2 249 33.3
FAN18G2146 Fragaria x ananassa HOM05D007432 ORTHO05D005238 6.0e-17 92.8 182 33.0
FvH4_3g10870 Fragaria vesca HOM05D007432 ORTHO05D005238 1.0e-16 92.0 122 41.8
FvH4_6g05152 Fragaria vesca HOM05D007432 ORTHO05D005238 1.0e-16 92.0 192 31.8
FAN14G0817 Fragaria x ananassa HOM05D007432 ORTHO05D005238 3.9e-16 90.1 192 31.2
FAN18G3942 Fragaria x ananassa HOM05D007432 ORTHO05D005238 6.6e-16 89.4 121 40.5
FvH4_1g22101 Fragaria vesca HOM05D009150 ORTHO05D005238 1.1e-15 88.6 362 25.7
FvH4_5g15791 Fragaria vesca HOM05D007432 ORTHO05D005238 1.1e-15 88.6 121 43.8
FAN07G0659 Fragaria x ananassa HOM05D007432 ORTHO05D005238 1.9e-15 87.8 215 29.8
FvH4_2g14491 Fragaria vesca HOM05D007432 ORTHO05D005238 2.5e-15 87.4 122 41.8
FvH4_3g18871 Fragaria vesca HOM05D007432 ORTHO05D005238 3.3e-15 87.0 122 39.3
FAN11G2026 Fragaria x ananassa HOM05D007432 ORTHO05D005238 4.3e-15 86.7 122 40.2
FAN16G3690 Fragaria x ananassa HOM05D009150 ORTHO05D005238 4.3e-15 86.7 120 39.2
FAN15G2195 Fragaria x ananassa HOM05D003375 ORTHO05D004719 7.3e-15 85.9 344 25.6
FAN06G2363 Fragaria x ananassa HOM05D007432 ORTHO05D005238 4.8e-14 83.2 103 45.6
FAN21G3598 Fragaria x ananassa HOM05D007432 ORTHO05D005238 6.2e-14 82.8 149 36.2
FAN09G1180 Fragaria x ananassa HOM05D009150 ORTHO05D005238 1.1e-13 82.0 168 27.4
FAN07G2346 Fragaria x ananassa HOM05D003375 ORTHO05D004719 4.0e-13 80.1 356 25.6
RcHm_v2.0_Chr1g0344871 Rosa chinensis HOM05D003375 ORTHO05D004719 5.3e-13 79.7 165 27.3
FAN25G2326 Fragaria x ananassa HOM05D007432 ORTHO05D005238 1.2e-12 78.6 153 29.4
FAN24G0744 Fragaria x ananassa HOM05D007432 ORTHO05D005238 2.6e-12 77.4 249 25.7
FAN14G2235 Fragaria x ananassa HOM05D003375 ORTHO05D004719 4.5e-12 76.6 122 33.6
FvH4_2g07851 Fragaria vesca HOM05D007432 ORTHO05D005238 7.6e-12 75.9 103 41.7
FvH4_6g31722 Fragaria vesca HOM05D009150 ORTHO05D005238 2.9e-11 73.9 251 27.1
FvH4_6g30881 Fragaria vesca HOM05D007432 ORTHO05D005238 6.4e-11 72.8 121 36.4
FAN16G2433 Fragaria x ananassa HOM05D045573 ORTHO05D035868 6.4e-11 72.8 118 44.9
FvH4_6g12761 Fragaria vesca HOM05D003375 ORTHO05D004719 8.4e-11 72.4 115 34.8
QL10p045745 Quercus lobata HOM05D000003 ORTHO05D000126 1.1e-10 72.0 86 44.2
RcHm_v2.0_Chr5g0018871 Rosa chinensis HOM05D003375 ORTHO05D004719 1.1e-10 72.0 241 26.1
RcHm_v2.0_Chr6g0288921 Rosa chinensis HOM05D009201 ORTHO05D035868 1.1e-10 72.0 98 52.0
Lj6g0025856 Lotus japonicus HOM05D000003 ORTHO05D000126 1.9e-10 71.2 149 27.5
RcHm_v2.0_Chr7g0243191 Rosa chinensis HOM05D007432 ORTHO05D005238 2.4e-10 70.9 96 40.6
FvH4_4g05731 Fragaria vesca HOM05D002480 ORTHO05D003145 4.2e-10 70.1 218 23.4
LjContig00312_ERROPOS870357g0011324 Lotus japonicus HOM05D000003 ORTHO05D000126 5.4e-10 69.7 149 27.5
FAN15G2286 Fragaria x ananassa HOM05D007432 ORTHO05D005238 7.1e-10 69.3 243 28.8
Lj3g0009751 Lotus japonicus HOM05D000003 ORTHO05D000126 7.1e-10 69.3 129 34.9
Prupe.7G053800 Prunus persica HOM05D000003 ORTHO05D000126 7.1e-10 69.3 238 25.6
FAN27G0036 Fragaria x ananassa HOM05D007432 ORTHO05D005238 9.3e-10 68.9 205 26.8
Lj3g0007232 Lotus japonicus HOM05D000003 ORTHO05D000126 9.3e-10 68.9 184 29.9
FvH4_2g14911 Fragaria vesca HOM05D003375 ORTHO05D004719 1.6e-09 68.2 164 27.4
FAN17G0381 Fragaria x ananassa HOM05D007432 ORTHO05D005238 2.1e-09 67.8 96 41.7
FAN11G1788 Fragaria x ananassa HOM05D003375 ORTHO05D004719 2.7e-09 67.4 117 30.8
FAN22G0625 Fragaria x ananassa HOM05D017501 ORTHO05D020690 3.5e-09 67.0 103 34.0
QL05p065584 Quercus lobata HOM05D000003 ORTHO05D000126 3.5e-09 67.0 80 45.0
RcHm_v2.0_Chr6g0265791 Rosa chinensis HOM05D003375 ORTHO05D004719 4.6e-09 66.6 115 29.6
QL05p065665 Quercus lobata HOM05D000003 ORTHO05D000126 6.0e-09 66.2 80 43.8
Ah.11g044740 Amaranthus hybridus HOM05D000003 ORTHO05D000126 7.9e-09 65.9 142 29.6
FvH4_2g06802 Fragaria vesca HOM05D007432 ORTHO05D005238 1.0e-08 65.5 160 31.9
FvH4_6g03011 Fragaria vesca HOM05D008430 ORTHO05D010682 1.0e-08 65.5 337 22.3
FAN10G1469 Fragaria x ananassa HOM05D003375 ORTHO05D004719 1.3e-08 65.1 252 22.6
Lj4g0024219 Lotus japonicus HOM05D000003 ORTHO05D000126 1.3e-08 65.1 125 32.0
FAN03G0184 Fragaria x ananassa HOM05D007432 ORTHO05D005238 1.8e-08 64.7 121 36.4
FAN10G0217 Fragaria x ananassa HOM05D003375 ORTHO05D004719 2.3e-08 64.3 247 22.3
FAN21G1308 Fragaria x ananassa HOM05D008430 ORTHO05D010682 2.3e-08 64.3 331 23.0
RcHm_v2.0_Chr7g0191711 Rosa chinensis HOM05D000031 ORTHO05D000030 2.3e-08 64.3 52 55.8
FAN25G3030 Fragaria x ananassa HOM05D045573 ORTHO05D035868 3.0e-08 63.9 118 42.4
QL04p086004 Quercus lobata HOM05D000003 ORTHO05D000006 3.0e-08 63.9 119 37.0
QL03p061103 Quercus lobata HOM05D000003 ORTHO05D000126 3.9e-08 63.5 133 30.1
QL06p008405 Quercus lobata HOM05D000003 ORTHO05D000126 3.9e-08 63.5 78 42.3
QL12p016245 Quercus lobata HOM05D000003 ORTHO05D000126 3.9e-08 63.5 82 37.8
Atru.chr7.130 Acer truncatum HOM05D000003 ORTHO05D000126 5.1e-08 63.2 199 23.1
FvH4_5g37180 Fragaria vesca HOM05D000003 ORTHO05D011454 5.1e-08 63.2 126 31.7
FvH4_7g07641 Fragaria vesca HOM05D009201 ORTHO05D005238 5.1e-08 63.2 178 29.8
FAN10G3952 Fragaria x ananassa HOM05D009150 ORTHO05D005238 5.1e-08 63.2 229 24.9
FvH4_3g22921 Fragaria vesca HOM05D000003 ORTHO05D000126 6.7e-08 62.8 126 31.0
FAN26G1926 Fragaria x ananassa HOM05D003375 ORTHO05D004719 6.7e-08 62.8 220 23.6
Atru.chr13.2168 Acer truncatum HOM05D000003 ORTHO05D000126 8.7e-08 62.4 192 27.1
Atru.chr2.933 Acer truncatum HOM05D000003 ORTHO05D000126 8.7e-08 62.4 73 39.7
Atru.chr6.1097 Acer truncatum HOM05D000003 ORTHO05D000126 1.5e-07 61.6 105 30.5
Atru.chr7.549 Acer truncatum HOM05D000003 ORTHO05D000126 1.5e-07 61.6 69 43.5
Ah.04g157460 Amaranthus hybridus HOM05D000003 ORTHO05D000126 1.5e-07 61.6 129 27.9
FAN24G1017 Fragaria x ananassa HOM05D007432 ORTHO05D005238 1.5e-07 61.6 73 46.6
QL02p050455 Quercus lobata HOM05D000003 ORTHO05D000126 1.5e-07 61.6 84 34.5
FAN08G2941 Fragaria x ananassa HOM05D003375 ORTHO05D004719 1.9e-07 61.2 194 23.2
Atru.chr3.2388 Acer truncatum HOM05D000003 ORTHO05D000126 2.5e-07 60.8 90 35.6
Prupe.1G197400 Prunus persica HOM05D000003 ORTHO05D000126 2.5e-07 60.8 112 33.9
QL03p026642 Quercus lobata HOM05D000003 ORTHO05D000126 2.5e-07 60.8 84 33.3
QL06p049455 Quercus lobata HOM05D000003 ORTHO05D000126 2.5e-07 60.8 151 26.5
TPR.G16107 Trifolium pratense HOM05D000003 ORTHO05D000126 2.5e-07 60.8 145 28.3
Atru.chr1.2555 Acer truncatum HOM05D000003 ORTHO05D000126 3.3e-07 60.5 182 22.5
Atru.chr8.1207 Acer truncatum HOM05D000003 ORTHO05D000126 3.3e-07 60.5 106 37.7
FAN12G1540 Fragaria x ananassa HOM05D003375 ORTHO05D004719 3.3e-07 60.5 148 23.6
Lj4g0023781 Lotus japonicus HOM05D000003 ORTHO05D000126 3.3e-07 60.5 152 29.6
Atru.chr13.2083 Acer truncatum HOM05D000003 ORTHO05D000006 4.3e-07 60.1 147 28.6
Atru.chr2.314 Acer truncatum HOM05D000003 ORTHO05D000126 4.3e-07 60.1 73 38.4
FAN18G4118 Fragaria x ananassa HOM05D007432 ORTHO05D005238 4.3e-07 60.1 71 45.1
FAN25G3537 Fragaria x ananassa HOM05D003375 ORTHO05D004719 4.3e-07 60.1 127 31.5
Atru.chr4.887 Acer truncatum HOM05D000003 ORTHO05D000126 5.6e-07 59.7 111 32.4
FvH4_6g17062 Fragaria vesca HOM05D009201 ORTHO05D029658 5.6e-07 59.7 168 33.3
FAN25G0390 Fragaria x ananassa HOM05D003375 ORTHO05D004719 5.6e-07 59.7 122 27.9
QL05p032863 Quercus lobata HOM05D000003 ORTHO05D000126 5.6e-07 59.7 117 32.5
LjContig00408g0002404 Lotus japonicus HOM05D000003 ORTHO05D000126 7.4e-07 59.3 141 25.5
Prupe.3G196300 Prunus persica HOM05D000003 ORTHO05D000126 7.4e-07 59.3 130 29.2
TPR.G36487 Trifolium pratense HOM05D000003 ORTHO05D000126 7.4e-07 59.3 241 24.5
Atru.chr11.2021 Acer truncatum HOM05D000003 ORTHO05D000126 9.6e-07 58.9 184 27.2
Atru.chr11.854 Acer truncatum HOM05D000003 ORTHO05D000126 9.6e-07 58.9 183 24.6
QL05p018238 Quercus lobata HOM05D000003 ORTHO05D000126 9.6e-07 58.9 80 35.0
Ah.10g029660 Amaranthus hybridus HOM05D000003 ORTHO05D000126 1.3e-06 58.5 124 28.2
AUR62024889 Chenopodium quinoa HOM05D000003 ORTHO05D000126 1.3e-06 58.5 193 26.9
Ah.09g230460 Amaranthus hybridus HOM05D000003 ORTHO05D000126 1.6e-06 58.2 149 26.2
QL09p033642 Quercus lobata HOM05D000003 ORTHO05D000126 1.6e-06 58.2 83 33.7
Atru.chr1.3557 Acer truncatum HOM05D000003 ORTHO05D000126 2.1e-06 57.8 84 32.1
AUR62034731 Chenopodium quinoa HOM05D000003 ORTHO05D000126 2.1e-06 57.8 185 27.6
FAN05G5003 Fragaria x ananassa HOM05D002480 ORTHO05D003145 2.1e-06 57.8 126 26.2
FAN24G1105 Fragaria x ananassa HOM05D007432 ORTHO05D005238 2.1e-06 57.8 218 24.3
QL03p061166 Quercus lobata HOM05D000003 ORTHO05D000126 2.1e-06 57.8 84 32.1
QL05p016467 Quercus lobata HOM05D000003 ORTHO05D000006 2.1e-06 57.8 80 35.0
Sed0001472 Sechium edule HOM05D000003 ORTHO05D000126 2.1e-06 57.8 220 25.5
Atru.chr13.2346 Acer truncatum HOM05D000003 ORTHO05D000004 2.8e-06 57.4 196 26.0
COL.COLO4_10561 Corchorus olitorius HOM05D000003 ORTHO05D000126 2.8e-06 57.4 191 22.5
Dinv06062 Davidia involucrata HOM05D000003 ORTHO05D000126 2.8e-06 57.4 78 34.6
FAN14G1343 Fragaria x ananassa HOM05D003375 ORTHO05D004719 2.8e-06 57.4 122 26.2
FAN26G2577 Fragaria x ananassa HOM05D007432 ORTHO05D005238 2.8e-06 57.4 117 32.5
Lj1P1051T34 Lonicera japonica HOM05D000003 ORTHO05D000126 2.8e-06 57.4 143 25.9
QL02p003383 Quercus lobata HOM05D000003 ORTHO05D000126 2.8e-06 57.4 80 31.2
QL07p007097 Quercus lobata HOM05D000003 ORTHO05D000126 2.8e-06 57.4 71 40.8
QL07p021558 Quercus lobata HOM05D000003 ORTHO05D000006 2.8e-06 57.4 73 41.1
QL09p045506 Quercus lobata HOM05D000003 ORTHO05D000004 2.8e-06 57.4 84 32.1
CSS0004935 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000126 3.7e-06 57.0 191 26.7
CSS0016982 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000126 3.7e-06 57.0 191 26.7
AUR62030615 Chenopodium quinoa HOM05D000003 ORTHO05D000126 3.7e-06 57.0 126 31.7
FAN12G3587 Fragaria x ananassa HOM05D003375 ORTHO05D004719 3.7e-06 57.0 127 28.3
QL02p019249 Quercus lobata HOM05D000003 ORTHO05D000126 3.7e-06 57.0 84 32.1
QL09p040040 Quercus lobata HOM05D000003 ORTHO05D000126 3.7e-06 57.0 86 30.2
Sed0009255 Sechium edule HOM05D000003 ORTHO05D000126 3.7e-06 57.0 151 25.2
Atru.chr10.301 Acer truncatum HOM05D000003 ORTHO05D000126 4.8e-06 56.6 66 37.9
CANSAT51G0005 Cannabis sativa HOM05D000003 ORTHO05D000126 4.8e-06 56.6 150 28.0
Lj5P270T37 Lonicera japonica HOM05D000003 ORTHO05D000126 4.8e-06 56.6 142 26.8
QL03p060676 Quercus lobata HOM05D000003 ORTHO05D000126 4.8e-06 56.6 87 33.3
AUR62001732 Chenopodium quinoa HOM05D000003 ORTHO05D000126 6.2e-06 56.2 141 30.5
FvH4_3g10980 Fragaria vesca HOM05D003375 ORTHO05D004719 6.2e-06 56.2 82 28.0
FAN16G2163 Fragaria x ananassa HOM05D007432 ORTHO05D005238 6.2e-06 56.2 118 35.6
Lj8P336T24 Lonicera japonica HOM05D000003 ORTHO05D000126 6.2e-06 56.2 147 25.2
FAN09G4372 Fragaria x ananassa HOM05D036571 ORTHO05D005238 8.1e-06 55.8 111 30.6
FAN16G0830 Fragaria x ananassa HOM05D003375 ORTHO05D004719 8.1e-06 55.8 294 22.4
QL04p027291 Quercus lobata HOM05D000003 ORTHO05D000126 8.1e-06 55.8 78 34.6
QL07p020252 Quercus lobata HOM05D000003 ORTHO05D000126 8.1e-06 55.8 80 36.2


User provided reference genes

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