Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN14G1686 Fragaria x ananassa HOM05D004903 ORTHO05D005849 2.8e-149 531.9 276 100.0
FAN09G2808 Fragaria x ananassa HOM05D004903 ORTHO05D005849 5.3e-148 527.7 276 98.9
FAN02G0327 Fragaria x ananassa HOM05D004903 ORTHO05D005849 8.5e-146 520.4 276 94.9
FAN14G0435 Fragaria x ananassa HOM05D004903 ORTHO05D005849 8.5e-146 520.4 276 94.9
FvH4_6g36070 Fragaria vesca HOM05D004903 ORTHO05D005849 3.0e-143 511.9 276 93.1
RcHm_v2.0_Chr2g0148141 Rosa chinensis HOM05D004903 ORTHO05D005849 6.1e-136 487.6 278 88.1
Prupe.3G030200 Prunus persica HOM05D004903 ORTHO05D005849 1.3e-114 416.8 286 75.5
MD09G1171800 Malus domestica HOM05D004903 ORTHO05D005849 3.3e-105 385.6 286 71.0
MD17G1155200 Malus domestica HOM05D004903 ORTHO05D005849 4.4e-102 375.2 290 68.3
QL05p000751 Quercus lobata HOM05D004903 ORTHO05D005849 2.0e-99 366.3 286 67.1
Manes.11G011500 Manihot esculenta HOM05D004903 ORTHO05D005849 1.0e-98 364.0 291 65.6
CiPaw.01G210600 Carya illinoinensis HOM05D004903 ORTHO05D005849 3.0e-98 362.5 293 67.9
QL05p000658 Quercus lobata HOM05D004903 ORTHO05D005849 6.6e-98 361.3 291 65.3
Atru.chr1.4170 Acer truncatum HOM05D004903 ORTHO05D005849 9.5e-97 357.5 286 64.0
Dinv20374 Davidia involucrata HOM05D004903 ORTHO05D005849 9.5e-97 357.5 290 63.4
TAR624G0709 Trochodendron aralioides HOM05D004903 ORTHO05D005849 1.8e-95 353.2 290 63.1
Potri.001G161800 Populus trichocarpa HOM05D004903 ORTHO05D005849 5.2e-95 351.7 290 63.1
CANSAT56G0172 Cannabis sativa HOM05D004903 ORTHO05D005849 5.8e-94 348.2 287 64.5
GSVIVG01016657001 Vitis vinifera HOM05D004903 ORTHO05D005849 7.5e-94 347.8 281 63.3
Duzib160G0805 Durio zibethinus HOM05D004903 ORTHO05D005849 9.9e-94 347.4 286 61.5
Ciclev10026250m.g Citrus clementina HOM05D004903 ORTHO05D005849 2.2e-93 346.3 292 63.0
Gorai.010G172600 Gossypium raimondii HOM05D004903 ORTHO05D005849 4.9e-93 345.1 286 61.9
Gohir.A06G142500 Gossypium hirsutum HOM05D004903 ORTHO05D005849 6.4e-93 344.7 286 61.9
CSS0022789 Camellia sinensis var. sinensis HOM05D004903 ORTHO05D005849 1.1e-92 344.0 290 61.7
Hund18627 Selenicereus undatus HOM05D004903 ORTHO05D005849 2.4e-92 342.8 284 63.4
ClCG09G001430 Citrullus lanatus HOM05D004903 ORTHO05D005849 4.1e-92 342.0 280 62.1
CAN.G1633.2 Capsicum annuum HOM05D004903 ORTHO05D005849 1.6e-91 340.1 288 60.4
Thecc.06G131400 Theobroma cacao HOM05D004903 ORTHO05D005849 1.6e-91 340.1 286 59.8
Actinidia25997 Actinidia chinensis HOM05D004903 ORTHO05D005849 3.5e-91 339.0 284 61.3
TWI59G0350 Tripterygium wilfordii HOM05D004903 ORTHO05D005849 3.5e-91 339.0 289 59.5
EL10Ac7g18248 Beta vulgaris HOM05D004903 ORTHO05D005849 1.0e-90 337.4 281 63.3
PGSC0003DMG400004869 Solanum tuberosum HOM05D004903 ORTHO05D005849 1.3e-90 337.0 289 59.5
Nitab4.5_0006190g0020 Nicotiana tabacum HOM05D004903 ORTHO05D005849 5.1e-90 335.1 288 59.4
AUR62001391 Chenopodium quinoa HOM05D004903 ORTHO05D005849 1.5e-89 333.6 281 61.9
Migut.I01143 Erythranthe guttata HOM05D004903 ORTHO05D005849 4.3e-89 332.0 284 60.2
THA.LOC104810400 Tarenaya hassleriana HOM05D004903 ORTHO05D005849 4.3e-89 332.0 273 62.6
AT1G53760 Arabidopsis thaliana HOM05D004903 ORTHO05D005849 5.6e-89 331.6 283 60.4
CARHR044070 Cardamine hirsuta HOM05D004903 ORTHO05D005849 5.6e-89 331.6 289 60.6
CsaV3_7G033900 Cucumis sativus L. HOM05D004903 ORTHO05D005849 9.5e-89 330.9 276 60.9
Lj3g0025901 Lotus japonicus HOM05D004903 ORTHO05D005849 9.5e-89 330.9 283 62.2
Peaxi162Scf00207g01534 Petunia axillaris HOM05D004903 ORTHO05D005849 1.2e-88 330.5 289 58.5
Lsat_1_v5_gn_5_137641 Lactuca sativa HOM05D004903 ORTHO05D005849 1.6e-88 330.1 267 63.7
Glyma.07G046600 Glycine max HOM05D004903 ORTHO05D005849 2.1e-88 329.7 283 59.4
Thhalv10011709m.g Eutrema salsugineum HOM05D004903 ORTHO05D005849 2.8e-88 329.3 285 60.4
Solyc06g063130.3 Solanum lycopersicum HOM05D004903 ORTHO05D005849 2.8e-88 329.3 289 58.5
AL1G62450 Arabidopsis lyrata HOM05D004903 ORTHO05D005849 4.7e-88 328.6 282 59.9
Sopen06g022580 Solanum pennellii HOM05D004903 ORTHO05D005849 4.7e-88 328.6 289 58.5
BcaB02g10893 Brassica carinata HOM05D004903 ORTHO05D005849 8.1e-88 327.8 273 61.5
C06p09540 Brassica napus HOM05D004903 ORTHO05D005849 1.1e-87 327.4 277 61.7
BolC6t36028H Brassica oleracea HOM05D004903 ORTHO05D005849 1.1e-87 327.4 277 61.7
Gohir.D06G202400 Gossypium hirsutum HOM05D004903 ORTHO05D005849 1.1e-87 327.4 274 61.7
Gorai.010G236300 Gossypium raimondii HOM05D004903 ORTHO05D005849 1.4e-87 327.0 274 61.7
Actinidia24416 Actinidia chinensis HOM05D004903 ORTHO05D005849 1.8e-87 326.6 297 56.9
Lj5A28T47 Lonicera japonica HOM05D004903 ORTHO05D005849 3.1e-87 325.9 345 52.8
Sed0027894 Sechium edule HOM05D004903 ORTHO05D005849 3.1e-87 325.9 278 64.7
A05p17920 Brassica napus HOM05D004903 ORTHO05D005849 5.2e-87 325.1 273 61.2
BraA05t20686Z Brassica rapa HOM05D004903 ORTHO05D005849 1.5e-86 323.6 273 60.8
BcaC08g44129 Brassica carinata HOM05D004903 ORTHO05D005849 2.6e-86 322.8 274 60.6
BolC6t36703H Brassica oleracea HOM05D004903 ORTHO05D005849 2.6e-86 322.8 274 60.6
Lalb_Chr17g0343171 Lupinus albus HOM05D004903 ORTHO05D005849 2.6e-86 322.8 282 57.4
C06p15280 Brassica napus HOM05D004903 ORTHO05D005849 5.8e-86 321.6 274 60.2
BraA06t23313Z Brassica rapa HOM05D004903 ORTHO05D005849 5.8e-86 321.6 278 60.4
BcaC08g43554 Brassica carinata HOM05D004903 ORTHO05D005849 9.9e-86 320.9 278 60.4
Carub.0001s4303 Capsella rubella HOM05D004903 ORTHO05D005849 1.3e-85 320.5 283 58.7
Glyma.16G015600 Glycine max HOM05D004903 ORTHO05D005849 1.3e-85 320.5 281 59.1
COL.COLO4_30880 Corchorus olitorius HOM05D004903 ORTHO05D005849 2.2e-85 319.7 239 66.1
A06p00790 Brassica napus HOM05D004903 ORTHO05D005849 2.9e-85 319.3 278 60.1
BcaB07g33303 Brassica carinata HOM05D004903 ORTHO05D005849 3.8e-85 318.9 279 60.2
HanXRQChr12g0360041 Helianthus annuus HOM05D004903 ORTHO05D005849 4.9e-85 318.5 278 57.6
MSTRG.10905 Avicennia marina HOM05D004903 ORTHO05D005849 3.2e-84 315.8 286 58.0
Sp1g40280 Schrenkiella parvula HOM05D004903 ORTHO05D005849 3.2e-84 315.8 283 58.3
Gohir.A06G194700 Gossypium hirsutum HOM05D004903 ORTHO05D005849 5.4e-84 315.1 274 60.6
Medtr8g023500 Medicago truncatula HOM05D004903 ORTHO05D005849 9.2e-84 314.3 293 56.7
arahy.Tifrunner.gnm1.ann1.97GHXX Arachis hypogaea HOM05D004903 ORTHO05D005849 2.1e-83 313.2 286 57.7
Eucgr.J02586 Eucalyptus grandis HOM05D004903 ORTHO05D005849 2.7e-83 312.8 291 57.7
Nn8g38503 Nelumbo nucifera HOM05D004903 ORTHO05D005849 1.0e-82 310.8 287 59.6
DCAR_022636 Daucus carota HOM05D004903 ORTHO05D005849 1.3e-82 310.5 292 57.2
vmacro18714 Vaccinium macrocarpon HOM05D004903 ORTHO05D005849 1.3e-82 310.5 289 58.1
arahy.Tifrunner.gnm1.ann1.AA2XIP Arachis hypogaea HOM05D004903 ORTHO05D005849 6.6e-82 308.1 289 57.1
arahy.Tifrunner.gnm1.ann1.3XU7EE Arachis hypogaea HOM05D004903 ORTHO05D005849 1.9e-81 306.6 285 57.5
Sc12g0011010 Simmondsia chinensis HOM05D004903 ORTHO05D005849 4.3e-81 305.4 264 59.1
Aa31LG10G1530 Aethionema arabicum HOM05D000070 ORTHO05D003301 5.6e-81 305.1 254 60.6
Sabra03G0044200 Salix brachista HOM05D004903 ORTHO05D005849 5.6e-81 305.1 317 53.6
arahy.Tifrunner.gnm1.ann1.M9BVNS Arachis hypogaea HOM05D004903 ORTHO05D005849 1.6e-80 303.5 286 57.0
SalBow6G3230 Salvia bowleyana HOM05D004903 ORTHO05D005849 2.1e-80 303.1 284 54.9
Aqoxy7G00919 Aquilegia oxysepala HOM05D004903 ORTHO05D005849 4.7e-80 302.0 299 53.8
PSO135G0609 Papaver somniferum HOM05D004903 ORTHO05D005849 4.7e-80 302.0 284 54.9
Phvul.010G122300 Phaseolus vulgaris HOM05D004903 ORTHO05D005849 6.2e-80 301.6 286 54.5
Cc04_g00600 Coffea canephora HOM05D004903 ORTHO05D005849 1.1e-79 300.8 294 55.1
Nitab4.5_0010570g0050 Nicotiana tabacum HOM05D004903 ORTHO05D005849 1.4e-79 300.4 278 56.1
Psat4g164720 Pisum sativum HOM05D004903 ORTHO05D005849 2.4e-79 299.7 282 55.0
PSO724G0850 Papaver somniferum HOM05D004903 ORTHO05D005849 3.1e-79 299.3 284 54.6
arahy.Tifrunner.gnm1.ann1.HDKQ14 Arachis hypogaea HOM05D004903 ORTHO05D005849 1.5e-78 297.0 306 52.9
Rhsim08G0245600 Rhododendron simsii HOM05D004903 ORTHO05D005849 1.7e-77 293.5 212 68.9
Sabra01G0130700 Salix brachista HOM05D004903 ORTHO05D005849 1.9e-76 290.0 311 54.0
arahy.Tifrunner.gnm1.ann1.ZQ2A8X Arachis hypogaea HOM05D004903 ORTHO05D005849 4.2e-76 288.9 306 52.9
Cpa.g.sc25.203 Carica papaya HOM05D004903 ORTHO05D005849 9.3e-76 287.7 199 70.9
arahy.Tifrunner.gnm1.ann1.5Z4EMJ Arachis hypogaea HOM05D004903 ORTHO05D005849 2.1e-75 286.6 277 56.0
MELO3C024303.2 Cucumis melo HOM05D004903 ORTHO05D005849 3.0e-74 282.7 197 69.0
TPR.G15248 Trifolium pratense HOM05D004903 ORTHO05D005849 3.0e-74 282.7 232 61.6
unitig_32.g11002 Utricularia gibba HOM05D004903 ORTHO05D005849 3.9e-74 282.3 285 50.9
Gorai.011G054300 Gossypium raimondii HOM05D004903 ORTHO05D005849 6.6e-74 281.6 225 62.7
SGA_v2.0_scaffold71G23946 Striga asiatica HOM05D004903 ORTHO05D005849 6.6e-74 281.6 282 54.6
Dinv37814 Davidia involucrata HOM05D004903 ORTHO05D005849 8.7e-74 281.2 211 68.2
ATR0006G080 Amborella trichopoda HOM05D004903 ORTHO05D005849 1.5e-73 280.4 276 49.6
AUR62025608 Chenopodium quinoa HOM05D004903 ORTHO05D005849 7.3e-73 278.1 280 55.4
HPP92_000828 Vanilla planifolia HOM05D004903 ORTHO05D005849 7.3e-73 278.1 277 52.0
Cfa003452 Carpinus fangiana HOM05D004903 ORTHO05D005849 1.3e-72 277.3 209 69.9
Oeu053414.1 Olea europaea HOM05D004903 ORTHO05D005849 2.1e-72 276.6 242 58.3
Ca_23466_v3 Cicer arietinum L. HOM05D004903 ORTHO05D005849 8.1e-72 274.6 230 60.4
Zm00001eb207930 Zea mays HOM05D004903 ORTHO05D005849 9.0e-71 271.2 286 50.3
VMungo0331G0875 Vigna mungo HOM05D004903 ORTHO05D005849 2.0e-70 270.0 213 63.4
ECA234G0009 Erigeron canadensis HOM05D004903 ORTHO05D005849 4.9e-69 265.4 215 61.9
MBI17_g12875_MAGBIO Magnolia biondii HOM05D004903 ORTHO05D005849 2.4e-68 263.1 274 50.4
Os02g0152600 Oryza sativa ssp. japonica HOM05D004903 ORTHO05D005849 4.2e-68 262.3 296 49.0
Gohir.A10G050050 Gossypium hirsutum HOM05D004903 ORTHO05D005849 6.0e-67 258.5 284 51.1
Oeu019513.1 Olea europaea HOM05D004903 ORTHO05D005849 3.0e-66 256.1 199 65.8
Hma1.2p1_1999F.1_g310500 Hydrangea macrophylla HOM05D004903 ORTHO05D005849 1.9e-65 253.4 199 63.3
Sed0021101 Sechium edule HOM05D004903 ORTHO05D005849 1.5e-62 243.8 208 60.6
Hma1.2p1_0090F.1_g045680 Hydrangea macrophylla HOM05D004903 ORTHO05D005849 8.4e-61 238.0 211 57.8
CDE06G0378 Ceratophyllum demersum HOM05D004903 ORTHO05D005849 1.6e-59 233.8 240 50.4
Actinidia31143 Actinidia chinensis HOM05D004903 ORTHO05D005849 1.8e-58 230.3 209 58.4
CDE04G1042 Ceratophyllum demersum HOM05D004903 ORTHO05D005849 1.8e-55 220.3 241 50.2
Gohir.D10G050650 Gossypium hirsutum HOM05D004903 ORTHO05D005849 6.5e-53 211.8 174 60.3
Mapoly0021s0048 Marchantia polymorpha HOM05D004903 ORTHO05D005849 1.1e-44 184.5 292 36.0
Haze_16148 Corylus avellana HOM05D003205 ORTHO05D003746 5.5e-44 182.2 194 56.2
AagrBONN_evm.TU.Sc2ySwM_228.2429 Anthoceros agrestis HOM05D004903 ORTHO05D005849 9.4e-44 181.4 214 40.7
Haze_16144 Corylus avellana HOM05D003205 ORTHO05D003746 5.1e-42 175.6 194 55.2
THA.LOC104822767 Tarenaya hassleriana HOM05D006671 ORTHO05D008637 3.1e-39 166.4 223 43.9
Gohir.D06G148232 Gossypium hirsutum HOM05D004903 ORTHO05D005849 2.5e-36 156.8 130 59.2
arahy.Tifrunner.gnm1.ann1.RS9BE1 Arachis hypogaea HOM05D004903 ORTHO05D005849 1.0e-34 151.4 174 50.0
BcaB02g07096 Brassica carinata HOM05D000219 ORTHO05D000226 5.1e-34 149.1 130 60.0
arahy.Tifrunner.gnm1.ann1.AT31DH Arachis hypogaea HOM05D004903 ORTHO05D005849 8.8e-34 148.3 96 74.0
BcaB07g32153 Brassica carinata HOM05D004903 ORTHO05D005849 5.7e-33 145.6 130 56.2
CBR_g34164 Chara braunii HOM05D004903 ORTHO05D005849 3.7e-32 142.9 217 34.6
Pp3c13_9790 Physcomitrium patens HOM05D004903 ORTHO05D005849 1.1e-31 141.4 280 31.8
Gohir.D02G109866 Gossypium hirsutum HOM05D004903 ORTHO05D005849 5.0e-21 105.9 97 53.6
CDE06G0441 Ceratophyllum demersum HOM05D004903 ORTHO05D005849 3.6e-19 99.8 88 54.5
SEGI_28585 Sequoiadendron giganteum HOM05D004903 ORTHO05D005849 3.3e-17 93.2 134 40.3
SEGI_38260 Sequoiadendron giganteum HOM05D004903 ORTHO05D005849 3.3e-17 93.2 143 39.2
Glyma.16G014900 Glycine max HOM05D004903 ORTHO05D005849 8.3e-16 88.6 87 52.9
Duzib192G1079 Durio zibethinus HOM05D004903 ORTHO05D005849 3.1e-15 86.7 205 33.2
Hma1.2p1_0090F.1_g045690 Hydrangea macrophylla HOM05D004903 ORTHO05D005849 2.7e-14 83.6 81 54.3
Cre08.g358557 Chlamydomonas reinhardtii HOM05D004903 ORTHO05D005849 1.3e-13 81.3 142 32.4
PRCOL_00005128 Prasinoderma coloniale HOM05D004903 ORTHO05D005849 5.0e-13 79.3 135 40.0
TPR.G26438 Trifolium pratense HOM05D004903 ORTHO05D005849 8.0e-11 72.0 85 45.9
arahy.Tifrunner.gnm1.ann1.1E2DFU Arachis hypogaea HOM05D001485 ORTHO05D005849 1.4e-10 71.2 47 78.7
Cpa.g.sc25.204 Carica papaya HOM05D004903 ORTHO05D005849 8.8e-10 68.6 109 42.2
MCO07G235 Micromonas commoda HOM05D004903 ORTHO05D005849 1.7e-08 64.3 144 27.1
MBI17_g12881_MAGBIO Magnolia biondii HOM05D007686 ORTHO05D009709 8.3e-08 62.0 56 53.6
Actinidia21845 Actinidia chinensis HOM05D004903 ORTHO05D005849 2.0e-06 57.4 44 56.8
TPR.G13375 Trifolium pratense HOM05D000083 ORTHO05D002968 2.7e-06 57.0 80 38.8
arahy.Tifrunner.gnm1.ann1.ZRCJ38 Arachis hypogaea HOM05D004903 ORTHO05D005849 7.7e-06 55.5 65 52.3


User provided reference genes

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