Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_6g12190 Fragaria vesca HOM05D005357 ORTHO05D006354 1.9e-270 935.3 462 100.0
FAN09G0023 Fragaria x ananassa HOM05D005357 ORTHO05D006354 1.9e-270 935.3 462 100.0
FAN14G1666 Fragaria x ananassa HOM05D005357 ORTHO05D006354 1.9e-270 935.3 462 100.0
FAN14G2781 Fragaria x ananassa HOM05D005357 ORTHO05D006354 9.2e-270 932.9 462 99.8
FAN05G3392 Fragaria x ananassa HOM05D005357 ORTHO05D006354 6.4e-263 910.2 462 97.4
FAN02G3235 Fragaria x ananassa HOM05D005357 ORTHO05D006354 7.1e-254 880.2 446 97.5
RcHm_v2.0_Chr3g0463991 Rosa chinensis HOM05D005357 ORTHO05D006354 4.4e-248 860.9 469 91.7
Prupe.6G269500 Prunus persica HOM05D005357 ORTHO05D006354 4.6e-205 718.0 482 78.2
MD12G1159000 Malus domestica HOM05D005357 ORTHO05D006354 3.0e-196 688.7 479 74.7
MD04G1145200 Malus domestica HOM05D005357 ORTHO05D006354 2.0e-192 676.0 473 74.0
CANSAT35G1827 Cannabis sativa HOM05D005357 ORTHO05D006354 1.5e-166 590.1 477 68.1
QL07p036221 Quercus lobata HOM05D005357 ORTHO05D006354 1.5e-166 590.1 485 65.6
CiPaw.09G205000 Carya illinoinensis HOM05D005357 ORTHO05D006354 2.5e-166 589.3 484 66.1
Cfa017262 Carpinus fangiana HOM05D005357 ORTHO05D006354 2.8e-165 585.9 486 65.4
Haze_20938 Corylus avellana HOM05D005357 ORTHO05D006354 8.6e-159 564.3 481 63.6
Duzib093G0024 Durio zibethinus HOM05D005357 ORTHO05D006354 6.2e-157 558.1 488 64.1
COL.COLO4_14619 Corchorus olitorius HOM05D005357 ORTHO05D006354 7.0e-153 544.7 481 63.4
Thecc.05G023500 Theobroma cacao HOM05D005357 ORTHO05D006354 1.3e-151 540.4 480 62.7
Gohir.D09G158500 Gossypium hirsutum HOM05D005357 ORTHO05D006354 3.6e-149 532.3 476 62.4
Gohir.A09G163000 Gossypium hirsutum HOM05D005357 ORTHO05D006354 1.4e-148 530.4 480 62.1
TWI77G0073 Tripterygium wilfordii HOM05D005357 ORTHO05D006354 5.2e-148 528.5 489 60.1
Duzib128G1243 Durio zibethinus HOM05D005357 ORTHO05D006354 9.8e-147 524.2 478 61.1
Ciclev10011563m.g Citrus clementina HOM05D005357 ORTHO05D006354 4.9e-146 521.9 488 62.1
Gorai.006G180200 Gossypium raimondii HOM05D005357 ORTHO05D006354 1.1e-145 520.8 476 61.3
TAR633G0560 Trochodendron aralioides HOM05D005357 ORTHO05D006354 2.4e-145 519.6 510 58.8
Potri.006G095600 Populus trichocarpa HOM05D005357 ORTHO05D006354 4.1e-145 518.8 473 63.2
Peaxi162Scf00141g00133 Petunia axillaris HOM05D005357 ORTHO05D006354 5.4e-145 518.5 492 59.3
Hma1.2p1_0703F.1_g206335 Hydrangea macrophylla HOM05D005357 ORTHO05D006354 7.8e-144 514.6 490 61.6
Nitab4.5_0006254g0010 Nicotiana tabacum HOM05D005357 ORTHO05D006354 1.3e-143 513.8 488 59.6
Duzib106G1773 Durio zibethinus HOM05D005357 ORTHO05D006354 6.6e-143 511.5 480 60.8
Actinidia29139 Actinidia chinensis HOM05D005357 ORTHO05D006354 8.6e-143 511.1 488 58.6
Actinidia13789 Actinidia chinensis HOM05D005357 ORTHO05D006354 1.2e-141 507.3 489 57.3
Dinv37091 Davidia involucrata HOM05D005357 ORTHO05D006354 2.8e-141 506.1 487 59.5
ClCG10G021740 Citrullus lanatus HOM05D005357 ORTHO05D006354 8.9e-140 501.1 481 57.4
Manes.08G086900 Manihot esculenta HOM05D005357 ORTHO05D006354 2.0e-139 500.0 476 61.8
TAR636G3085 Trochodendron aralioides HOM05D005357 ORTHO05D006354 1.3e-138 497.3 483 58.2
TWI74G0304 Tripterygium wilfordii HOM05D005357 ORTHO05D006354 8.4e-138 494.6 449 61.9
Cpa.g.sc312.3 Carica papaya HOM05D005357 ORTHO05D006354 1.9e-137 493.4 483 59.8
Nn1g02852 Nelumbo nucifera HOM05D005357 ORTHO05D006354 2.5e-134 483.0 502 55.8
Cc06_g01760 Coffea canephora HOM05D005357 ORTHO05D006354 3.3e-134 482.6 487 56.9
CsaV3_3G034230 Cucumis sativus L. HOM05D005357 ORTHO05D006354 1.1e-132 477.6 482 56.2
Nitab4.5_0000008g0560 Nicotiana tabacum HOM05D005357 ORTHO05D006354 1.2e-131 474.2 490 56.7
Eucgr.B02762 Eucalyptus grandis HOM05D005357 ORTHO05D006354 3.8e-130 469.2 498 56.2
CAN.G284.13 Capsicum annuum HOM05D005357 ORTHO05D006354 8.4e-130 468.0 493 55.2
Sed0007832 Sechium edule HOM05D005357 ORTHO05D006354 2.4e-129 466.5 420 59.3
Glyma.07G144300 Glycine max HOM05D005357 ORTHO05D006354 3.3e-126 456.1 474 55.7
Gohir.A04G087700 Gossypium hirsutum HOM05D005357 ORTHO05D006354 9.6e-126 454.5 378 64.3
arahy.Tifrunner.gnm1.ann1.H8VZ0K Arachis hypogaea HOM05D005357 ORTHO05D006354 3.6e-125 452.6 474 56.8
Gorai.012G111100 Gossypium raimondii HOM05D005357 ORTHO05D006354 3.1e-124 449.5 383 63.4
Phvul.008G108800 Phaseolus vulgaris HOM05D005357 ORTHO05D006354 4.0e-124 449.1 474 55.3
MBI06_g17209_MAGBIO Magnolia biondii HOM05D005357 ORTHO05D006354 1.2e-123 447.6 507 52.3
Glyma.18G195500 Glycine max HOM05D005357 ORTHO05D006354 4.5e-123 445.7 475 54.5
arahy.Tifrunner.gnm1.ann1.5ZZ6F4 Arachis hypogaea HOM05D005357 ORTHO05D006354 9.9e-123 444.5 493 54.8
MELO3C009198.2 Cucumis melo HOM05D005357 ORTHO05D006354 1.3e-122 444.1 476 53.4
Sabra06G0073400 Salix brachista HOM05D005357 ORTHO05D006354 2.4e-121 439.9 567 49.9
Medtr7g066710 Medicago truncatula HOM05D005357 ORTHO05D006354 9.3e-121 438.0 474 56.5
PSO384G3148 Papaver somniferum HOM05D005357 ORTHO05D006354 4.6e-120 435.6 492 51.2
Medtr7g056183 Medicago truncatula HOM05D005357 ORTHO05D006354 1.8e-119 433.7 475 55.4
Lalb_Chr03g0042941 Lupinus albus HOM05D005357 ORTHO05D006354 1.5e-118 430.6 474 54.9
Lj3g0024478 Lotus japonicus HOM05D005357 ORTHO05D006354 2.5e-118 429.9 476 55.0
Lalb_Chr01g0022881 Lupinus albus HOM05D005357 ORTHO05D006354 2.1e-117 426.8 473 53.9
AUR62011861 Chenopodium quinoa HOM05D005357 ORTHO05D006354 6.2e-117 425.2 390 60.5
Ca_09168_v3 Cicer arietinum L. HOM05D005357 ORTHO05D006354 1.1e-116 424.5 474 53.8
EL10As5g23477 Beta vulgaris HOM05D005357 ORTHO05D006354 5.3e-116 422.2 391 59.6
SalBow3G4061 Salvia bowleyana HOM05D005357 ORTHO05D006354 2.0e-115 420.2 475 53.5
PSO585G0030 Papaver somniferum HOM05D005357 ORTHO05D006354 2.6e-115 419.9 486 50.2
Gohir.D04G128100 Gossypium hirsutum HOM05D005357 ORTHO05D006354 5.8e-115 418.7 383 60.6
Lj2A78G31 Lonicera japonica HOM05D005357 ORTHO05D006354 1.7e-114 417.2 477 54.1
AUR62024704 Chenopodium quinoa HOM05D005357 ORTHO05D006354 2.9e-114 416.4 390 59.5
Aqoxy1G00739 Aquilegia oxysepala HOM05D005357 ORTHO05D006354 4.9e-114 415.6 501 52.3
TPR.G1557 Trifolium pratense HOM05D005357 ORTHO05D006354 8.4e-114 414.8 387 60.2
vmacro01296 Vaccinium macrocarpon HOM05D005357 ORTHO05D006354 1.4e-113 414.1 484 52.7
PGSC0003DMG402020324 Solanum tuberosum HOM05D005357 ORTHO05D006354 6.0e-112 408.7 482 52.1
GSVIVG01034021001 Vitis vinifera HOM05D005357 ORTHO05D006354 3.0e-111 406.4 369 59.3
PGR031G1436 Punica granatum HOM05D005357 ORTHO05D006354 3.9e-111 406.0 513 50.7
Sopen09g006960 Solanum pennellii HOM05D005357 ORTHO05D006354 5.3e-108 395.6 476 51.3
Migut.J00234 Erythranthe guttata HOM05D005357 ORTHO05D006354 7.6e-107 391.7 471 51.6
Dinv03649 Davidia involucrata HOM05D005357 ORTHO05D006354 5.5e-105 385.6 392 58.2
MSTRG.5603 Avicennia marina HOM05D005357 ORTHO05D006354 2.1e-104 383.6 484 50.0
THA.LOC104827038 Tarenaya hassleriana HOM05D005357 ORTHO05D006354 4.6e-104 382.5 476 51.3
Ah.11g049570 Amaranthus hybridus HOM05D005357 ORTHO05D006354 4.3e-102 375.9 391 57.0
DCAR_005589 Daucus carota HOM05D005357 ORTHO05D006354 4.1e-100 369.4 494 48.2
Hund09607 Selenicereus undatus HOM05D005357 ORTHO05D006354 2.6e-99 366.7 388 54.1
CSS0020158 Camellia sinensis var. sinensis HOM05D005357 ORTHO05D006354 5.5e-97 359.0 373 56.0
Hund02920 Selenicereus undatus HOM05D005357 ORTHO05D006354 3.6e-96 356.3 387 54.3
Aa31LG1G22800 Aethionema arabicum HOM05D005357 ORTHO05D006354 1.3e-95 354.4 443 49.7
Oeu030537.4 Olea europaea HOM05D005357 ORTHO05D006354 2.3e-95 353.6 455 48.1
SGA_v2.0_scaffold85G26772 Striga asiatica HOM05D005357 ORTHO05D006354 1.5e-94 350.9 455 49.2
Sp6g40520 Schrenkiella parvula HOM05D005357 ORTHO05D006354 1.4e-92 344.4 399 52.9
Carub.0006s0073 Capsella rubella HOM05D005357 ORTHO05D006354 9.1e-92 341.7 392 52.6
CARHR211480 Cardamine hirsuta HOM05D005357 ORTHO05D006354 1.7e-90 337.4 380 53.7
Atru.chr8.2135 Acer truncatum HOM05D005357 ORTHO05D006354 1.1e-89 334.7 370 56.8
Thhalv10014073m.g Eutrema salsugineum HOM05D005357 ORTHO05D006354 1.1e-89 334.7 373 53.4
HPP92_021066 Vanilla planifolia HOM05D005357 ORTHO05D006354 1.1e-89 334.7 504 45.0
AT5G01160 Arabidopsis thaliana HOM05D005357 ORTHO05D006354 2.7e-88 330.1 384 52.3
AL6G11040 Arabidopsis lyrata HOM05D005357 ORTHO05D006354 3.0e-87 326.6 382 52.4
A10p33610 Brassica napus HOM05D005357 ORTHO05D006354 5.7e-86 322.4 384 51.6
Sc05g0000650 Simmondsia chinensis HOM05D005357 ORTHO05D006354 1.4e-84 317.8 322 56.2
BcaB05g21942 Brassica carinata HOM05D005357 ORTHO05D006354 3.1e-84 316.6 403 50.4
CDE04G3126 Ceratophyllum demersum HOM05D005357 ORTHO05D006354 4.1e-84 316.2 453 44.8
Os10g0494500 Oryza sativa ssp. japonica HOM05D005357 ORTHO05D006354 1.3e-82 311.2 440 45.7
C09p74540 Brassica napus HOM05D005357 ORTHO05D006354 3.2e-81 306.6 380 50.3
BolC9t60186H Brassica oleracea HOM05D005357 ORTHO05D006354 1.2e-80 304.7 380 50.3
BraA10t45393Z Brassica rapa HOM05D005357 ORTHO05D006354 1.6e-80 304.3 381 49.6
Psat3g131000 Pisum sativum HOM05D005357 ORTHO05D006354 6.7e-79 298.9 390 49.7
BcaNung02762 Brassica carinata HOM05D005357 ORTHO05D006354 1.5e-78 297.7 405 48.1
Oeu044369.1 Olea europaea HOM05D005357 ORTHO05D006354 5.7e-78 295.8 420 44.8
HanXRQChr13g0406371 Helianthus annuus HOM05D005357 ORTHO05D006354 7.4e-78 295.4 470 42.3
SGA_v2.0_scaffold75G24995 Striga asiatica HOM05D005357 ORTHO05D006354 1.7e-77 294.3 273 58.6
CDE03G0086 Ceratophyllum demersum HOM05D005357 ORTHO05D006354 4.8e-77 292.7 450 42.9
PGSC0003DMG400002411 Solanum tuberosum HOM05D005357 ORTHO05D006354 1.4e-76 291.2 376 49.2
Zm00001eb044800 Zea mays HOM05D005357 ORTHO05D006354 1.8e-76 290.8 445 44.5
ECA248G2096 Erigeron canadensis HOM05D005357 ORTHO05D006354 1.6e-75 287.7 402 47.8
BcaNung02766 Brassica carinata HOM05D005357 ORTHO05D006354 2.2e-74 283.9 397 47.1
VMungo1383G1762 Vigna mungo HOM05D005357 ORTHO05D006354 2.6e-70 270.4 354 48.3
Lsat_1_v5_gn_5_155380 Lactuca sativa HOM05D005357 ORTHO05D006354 1.1e-65 255.0 355 47.6
Solyc09g013120.4 Solanum lycopersicum HOM05D005357 ORTHO05D006354 7.5e-62 242.3 377 45.4
unitig_22.g6590 Utricularia gibba HOM05D005357 ORTHO05D006354 7.5e-62 242.3 471 38.4
Zm00001eb221140 Zea mays HOM05D005357 ORTHO05D006354 2.7e-59 233.8 242 55.4
HanXRQChr13g0397571 Helianthus annuus HOM05D005357 ORTHO05D006354 1.5e-57 228.0 378 41.5
SHI12776 Sapria himalayana HOM05D005357 ORTHO05D006354 6.1e-56 222.6 454 39.2
HanXRQChr13g0397921 Helianthus annuus HOM05D005357 ORTHO05D006354 5.2e-55 219.5 223 51.6
SEGI_31043 Sequoiadendron giganteum HOM05D005357 ORTHO05D006354 4.7e-48 196.4 220 48.2
DCAR_008325 Daucus carota HOM05D005357 ORTHO05D006354 4.0e-47 193.4 213 47.9
Hma1.2p1_0125F.1_g058510 Hydrangea macrophylla HOM05D005357 ORTHO05D006354 3.5e-43 180.3 356 38.8
Atru.chr8.2134 Acer truncatum HOM05D005357 ORTHO05D006354 9.5e-41 172.2 108 78.7
ATR0605G041 Amborella trichopoda HOM05D005357 ORTHO05D006354 3.2e-36 157.1 379 33.5
Mapoly0068s0057 Marchantia polymorpha HOM05D005357 ORTHO05D006354 3.2e-36 157.1 140 51.4
Pp3c20_10060 Physcomitrium patens HOM05D005357 ORTHO05D006354 1.2e-32 145.2 227 37.9
Pp3c23_4130 Physcomitrium patens HOM05D005357 ORTHO05D006354 3.6e-32 143.7 258 35.7
Pp3c8_18230 Physcomitrium patens HOM05D005357 ORTHO05D006354 5.8e-30 136.3 161 41.6
Glyma.18G195800 Glycine max HOM05D005357 ORTHO05D006354 4.9e-29 133.3 229 39.3
CBR_g24154 Chara braunii HOM05D005357 ORTHO05D006354 7.3e-25 119.4 106 47.2
Oeu055280.1 Olea europaea HOM05D005357 ORTHO05D006354 1.8e-23 114.8 242 38.0
SEGI_08495 Sequoiadendron giganteum HOM05D054687 ORTHO05D006354 5.2e-23 113.2 342 30.1
Rhsim01G0256700 Rhododendron simsii HOM05D005357 ORTHO05D004574 1.5e-22 111.7 163 45.4
PGSC0003DMG401020324 Solanum tuberosum HOM05D005357 ORTHO05D006354 4.4e-22 110.2 115 52.2
CSS0030830 Camellia sinensis var. sinensis HOM05D005357 ORTHO05D006354 2.4e-15 87.8 68 67.6
RcHm_v2.0_Chr3g0492291 Rosa chinensis HOM05D005357 ORTHO05D006354 7.6e-06 56.2 52 67.3


User provided reference genes

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