Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN14G1612 Fragaria x ananassa HOM05D004239 ORTHO05D005191 1.3e-227 792.7 409 100.0
FAN02G3565 Fragaria x ananassa HOM05D004239 ORTHO05D005191 5.7e-223 777.3 409 98.3
FAN09G3705 Fragaria x ananassa HOM05D004239 ORTHO05D005191 1.3e-219 766.1 409 97.3
FAN05G0638 Fragaria x ananassa HOM05D004239 ORTHO05D005191 2.2e-219 765.4 409 96.6
FAN14G2823 Fragaria x ananassa HOM05D004239 ORTHO05D005191 8.6e-203 710.3 409 92.2
FvH4_6g05650 Fragaria vesca HOM05D004239 ORTHO05D005191 2.6e-199 698.7 420 89.3
FAN05G5256 Fragaria x ananassa HOM05D004239 ORTHO05D005191 1.2e-196 689.9 409 89.5
RcHm_v2.0_Chr3g0454501 Rosa chinensis HOM05D004239 ORTHO05D005191 5.4e-189 664.5 420 85.0
MD12G1220700 Malus domestica HOM05D004239 ORTHO05D005191 1.6e-169 599.7 418 75.6
Prupe.6G327600 Prunus persica HOM05D004239 ORTHO05D005191 4.0e-168 595.1 420 75.2
MD04G1206900 Malus domestica HOM05D004239 ORTHO05D005191 3.0e-163 578.9 420 73.1
CiPaw.07G016500 Carya illinoinensis HOM05D004239 ORTHO05D005191 8.4e-158 560.8 420 71.7
Dinv40275 Davidia involucrata HOM05D004239 ORTHO05D005191 2.4e-157 559.3 420 71.4
QL03p006503 Quercus lobata HOM05D004239 ORTHO05D005191 3.5e-156 555.4 419 71.4
Cpa.g.sc48.35 Carica papaya HOM05D004239 ORTHO05D005191 1.3e-155 553.5 420 69.8
Cfa006576 Carpinus fangiana HOM05D004239 ORTHO05D005191 2.5e-154 549.3 420 70.2
Haze_04207 Corylus avellana HOM05D004239 ORTHO05D005191 3.3e-154 548.9 417 70.3
Manes.09G165700 Manihot esculenta HOM05D004239 ORTHO05D005191 9.6e-154 547.4 420 70.5
Potri.013G024000 Populus trichocarpa HOM05D004239 ORTHO05D005191 3.7e-153 545.4 420 68.8
Eucgr.B01993 Eucalyptus grandis HOM05D004239 ORTHO05D005191 4.8e-153 545.0 418 70.1
Potri.005G035300 Populus trichocarpa HOM05D004239 ORTHO05D005191 1.1e-152 543.9 420 68.8
CANSAT54G0620 Cannabis sativa HOM05D004239 ORTHO05D005191 6.9e-152 541.2 420 69.0
Oeu027738.1 Olea europaea HOM05D004239 ORTHO05D005191 5.8e-151 538.1 420 67.6
Manes.08G122300 Manihot esculenta HOM05D004239 ORTHO05D005191 9.9e-151 537.3 420 68.3
Peaxi162Scf00037g00226 Petunia axillaris HOM05D004239 ORTHO05D005191 3.2e-149 532.3 420 66.9
Actinidia23624 Actinidia chinensis HOM05D004239 ORTHO05D005191 1.6e-148 530.0 420 68.6
Cc00_g15600 Coffea canephora HOM05D004239 ORTHO05D005191 2.1e-148 529.6 420 67.1
Oeu038249.1 Olea europaea HOM05D004239 ORTHO05D005191 6.7e-147 524.6 420 66.4
Nitab4.5_0005388g0060 Nicotiana tabacum HOM05D004239 ORTHO05D005191 1.3e-145 520.4 420 66.4
SGA_v2.0_scaffold81G26082 Striga asiatica HOM05D004239 ORTHO05D005191 1.6e-145 520.0 420 66.0
TAR636G0428 Trochodendron aralioides HOM05D004239 ORTHO05D005191 2.1e-145 519.6 421 65.8
Ciclev10001383m.g Citrus clementina HOM05D004239 ORTHO05D005191 1.8e-144 516.5 409 66.3
GSVIVG01000037001 Vitis vinifera HOM05D004239 ORTHO05D005191 1.8e-144 516.5 419 66.3
Hund21687 Selenicereus undatus HOM05D004239 ORTHO05D005191 4.0e-144 515.4 418 65.8
PGSC0003DMG401028586 Solanum tuberosum HOM05D004239 ORTHO05D005191 9.0e-144 514.2 417 65.0
MSTRG.5107 Avicennia marina HOM05D004239 ORTHO05D005191 3.4e-143 512.3 418 65.3
Sed0007278 Sechium edule HOM05D004239 ORTHO05D005191 4.5e-143 511.9 421 65.8
Nn4g26228 Nelumbo nucifera HOM05D004239 ORTHO05D005191 7.6e-143 511.1 418 64.6
PSO063G4628 Papaver somniferum HOM05D004239 ORTHO05D005191 7.6e-143 511.1 419 64.9
vmacro19629 Vaccinium macrocarpon HOM05D004239 ORTHO05D005191 7.6e-143 511.1 420 66.2
Aqoxy2G03302 Aquilegia oxysepala HOM05D004239 ORTHO05D005191 1.0e-142 510.8 422 65.9
Solyc01g098840.3 Solanum lycopersicum HOM05D004239 ORTHO05D005191 1.3e-142 510.4 417 65.0
Sopen01g042380 Solanum pennellii HOM05D004239 ORTHO05D005191 1.3e-142 510.4 417 64.7
Sabra13G0025600 Salix brachista HOM05D004239 ORTHO05D005191 2.2e-142 509.6 438 63.5
Migut.N01997 Erythranthe guttata HOM05D004239 ORTHO05D005191 3.8e-142 508.8 420 64.3
Glyma.03G239000 Glycine max HOM05D004239 ORTHO05D005191 3.8e-142 508.8 420 64.8
CAN.G1077.21 Capsicum annuum HOM05D004239 ORTHO05D005191 4.9e-142 508.4 417 64.5
Ca_09364_v3 Cicer arietinum L. HOM05D004239 ORTHO05D005191 4.9e-142 508.4 421 66.3
Nitab4.5_0009323g0010 Nicotiana tabacum HOM05D004239 ORTHO05D005191 4.9e-142 508.4 420 65.5
Rhsim05G0142700 Rhododendron simsii HOM05D004239 ORTHO05D005191 4.9e-142 508.4 420 66.7
vmacro23128 Vaccinium macrocarpon HOM05D004239 ORTHO05D005191 4.9e-142 508.4 420 64.8
DCAR_029425 Daucus carota HOM05D004239 ORTHO05D005191 8.4e-142 507.7 420 64.8
Lalb_Chr04g0260811 Lupinus albus HOM05D004239 ORTHO05D005191 8.4e-142 507.7 415 65.5
SalBow3G0110 Salvia bowleyana HOM05D004239 ORTHO05D005191 8.4e-142 507.7 417 64.0
Lj9A25G19 Lonicera japonica HOM05D004239 ORTHO05D005191 1.4e-141 506.9 417 65.5
Lj9A26G17 Lonicera japonica HOM05D004239 ORTHO05D005191 1.4e-141 506.9 417 65.5
EL10Ac4g09340 Beta vulgaris HOM05D004239 ORTHO05D005191 1.9e-141 506.5 418 65.1
Peaxi162Scf00471g00018 Petunia axillaris HOM05D004239 ORTHO05D005191 3.2e-141 505.8 412 65.3
AUR62005132 Chenopodium quinoa HOM05D004239 ORTHO05D005191 3.5e-140 502.3 419 64.2
Nn1g02198 Nelumbo nucifera HOM05D004239 ORTHO05D005191 3.5e-140 502.3 419 64.2
CSS0041428 Camellia sinensis var. sinensis HOM05D004239 ORTHO05D005191 6.1e-140 501.5 420 66.9
AUR62000841 Chenopodium quinoa HOM05D004239 ORTHO05D005191 1.3e-139 500.4 427 63.2
ClCG02G015900 Citrullus lanatus HOM05D004239 ORTHO05D005191 1.3e-139 500.4 412 65.8
PGR083G1755 Punica granatum HOM05D004239 ORTHO05D005191 1.3e-139 500.4 420 65.2
Phvul.006G092900 Phaseolus vulgaris HOM05D004239 ORTHO05D005191 3.9e-139 498.8 420 65.0
Dinv23953 Davidia involucrata HOM05D004239 ORTHO05D005191 5.1e-139 498.4 369 71.5
TWI12G0310 Tripterygium wilfordii HOM05D004239 ORTHO05D005191 6.7e-139 498.0 415 64.1
TWI36G1635 Tripterygium wilfordii HOM05D004239 ORTHO05D005191 6.7e-139 498.0 416 65.1
MELO3C004278.2 Cucumis melo HOM05D004239 ORTHO05D005191 8.7e-139 497.7 420 64.8
VMungo0540G1286 Vigna mungo HOM05D004239 ORTHO05D005191 1.5e-138 496.9 420 64.8
Medtr7g113660 Medicago truncatula HOM05D004239 ORTHO05D005191 1.9e-138 496.5 421 65.3
TPR.G33198 Trifolium pratense HOM05D004239 ORTHO05D005191 1.9e-138 496.5 425 65.2
CsaV3_2G005140 Cucumis sativus L. HOM05D004239 ORTHO05D005191 4.3e-138 495.4 420 64.5
Sed0006954 Sechium edule HOM05D004239 ORTHO05D005191 9.7e-138 494.2 415 64.1
Psat3g010600 Pisum sativum HOM05D004239 ORTHO05D005191 3.1e-136 489.2 421 64.1
unitig_0.g2376 Utricularia gibba HOM05D004239 ORTHO05D005191 8.5e-134 481.1 420 62.4
arahy.Tifrunner.gnm1.ann1.VWT09S Arachis hypogaea HOM05D004239 ORTHO05D005191 1.1e-133 480.7 422 64.2
Lsat_1_v5_gn_4_139401 Lactuca sativa HOM05D004239 ORTHO05D005191 5.5e-133 478.4 421 62.7
Sc09g0003220 Simmondsia chinensis HOM05D004239 ORTHO05D005191 1.2e-132 477.2 369 68.6
THA.LOC104802807 Tarenaya hassleriana HOM05D004239 ORTHO05D005191 2.1e-132 476.5 417 63.3
Lj1g0017751 Lotus japonicus HOM05D004239 ORTHO05D005191 7.9e-132 474.6 368 68.5
arahy.Tifrunner.gnm1.ann1.5NK7V3 Arachis hypogaea HOM05D004239 ORTHO05D005191 1.0e-131 474.2 446 61.4
A09p05280 Brassica napus HOM05D004239 ORTHO05D005191 1.4e-131 473.8 418 62.7
TAR365G0701 Trochodendron aralioides HOM05D004239 ORTHO05D005191 1.8e-131 473.4 370 66.8
BraA09t36167Z Brassica rapa HOM05D004239 ORTHO05D005191 3.0e-131 472.6 417 62.6
Aa31LG11G9210 Aethionema arabicum HOM05D004239 ORTHO05D005191 8.8e-131 471.1 418 62.4
BcaB04g19671 Brassica carinata HOM05D004239 ORTHO05D005191 4.3e-130 468.8 419 61.8
Thhalv10004396m.g Eutrema salsugineum HOM05D004239 ORTHO05D005191 5.7e-130 468.4 417 62.8
C09p05760 Brassica napus HOM05D004239 ORTHO05D005191 8.2e-129 464.5 417 62.1
ECA234G2741 Erigeron canadensis HOM05D004239 ORTHO05D005191 8.2e-129 464.5 424 60.6
BcaC04g23678 Brassica carinata HOM05D004239 ORTHO05D005191 1.8e-128 463.4 418 62.0
BolC9t53503H Brassica oleracea HOM05D004239 ORTHO05D005191 1.8e-128 463.4 418 62.0
Sp2g20670 Schrenkiella parvula HOM05D004239 ORTHO05D005191 2.4e-128 463.0 417 61.9
A02p38630 Brassica napus HOM05D004239 ORTHO05D005191 5.3e-128 461.8 419 61.1
BraA02t08839Z Brassica rapa HOM05D004239 ORTHO05D005191 6.9e-128 461.5 419 60.9
Duzib106G0174 Durio zibethinus HOM05D004239 ORTHO05D005191 2.0e-127 459.9 420 58.8
C02p58120 Brassica napus HOM05D004239 ORTHO05D005191 5.9e-127 458.4 418 60.8
BolC2t11880H Brassica oleracea HOM05D004239 ORTHO05D005191 1.0e-126 457.6 418 60.5
HanXRQChr09g0259671 Helianthus annuus HOM05D004239 ORTHO05D005191 3.8e-126 455.7 420 60.0
Actinidia19795 Actinidia chinensis HOM05D004239 ORTHO05D005191 5.0e-126 455.3 373 67.0
Carub.0006s2508 Capsella rubella HOM05D004239 ORTHO05D005191 6.5e-126 454.9 414 61.6
AL6G39560 Arabidopsis lyrata HOM05D004239 ORTHO05D005191 3.2e-125 452.6 414 61.8
Thecc.05G305000 Theobroma cacao HOM05D004239 ORTHO05D005191 4.2e-125 452.2 418 58.1
AT5G27450 Arabidopsis thaliana HOM05D004239 ORTHO05D005191 1.2e-124 450.7 414 61.4
Gohir.A11G295900 Gossypium hirsutum HOM05D004239 ORTHO05D005191 3.6e-124 449.1 420 58.8
Gorai.007G342800 Gossypium raimondii HOM05D004239 ORTHO05D005191 1.0e-123 447.6 420 58.8
Gohir.D11G311000 Gossypium hirsutum HOM05D004239 ORTHO05D005191 2.3e-123 446.4 420 58.8
CARHR186060 Cardamine hirsuta HOM05D004239 ORTHO05D005191 1.5e-122 443.7 414 60.1
Lsat_1_v5_gn_2_64361 Lactuca sativa HOM05D004239 ORTHO05D005191 1.5e-122 443.7 422 58.8
ClCG10G005450 Citrullus lanatus HOM05D004239 ORTHO05D005191 1.0e-118 431.0 411 59.6
ATR0561G047 Amborella trichopoda HOM05D004239 ORTHO05D005191 9.4e-117 424.5 415 57.3
Glyma.19G236200 Glycine max HOM05D004239 ORTHO05D005191 6.1e-116 421.8 369 61.5
Sed0017775 Sechium edule HOM05D004239 ORTHO05D005191 5.2e-115 418.7 409 58.4
BcaC03g17788 Brassica carinata HOM05D004239 ORTHO05D005191 7.4e-114 414.8 418 57.4
RcHm_v2.0_Chr7g0220931 Rosa chinensis HOM05D004239 ORTHO05D005191 7.4e-114 414.8 329 71.4
Os10g0329300 Oryza sativa ssp. japonica HOM05D004239 ORTHO05D005191 2.5e-109 399.8 426 54.2
Gorai.007G296000 Gossypium raimondii HOM05D004239 ORTHO05D005191 7.2e-109 398.3 411 54.5
Zm00001eb209270 Zea mays HOM05D004239 ORTHO05D005191 1.6e-108 397.1 424 53.1
SEGI_00819 Sequoiadendron giganteum HOM05D004239 ORTHO05D005191 8.0e-108 394.8 420 53.1
Nitab4.5_0002031g0070 Nicotiana tabacum HOM05D004239 ORTHO05D005191 7.5e-106 388.3 420 53.3
Zm00001eb209470 Zea mays HOM05D004239 ORTHO05D005191 3.1e-104 382.9 409 52.6
SHI18197 Sapria himalayana HOM05D004239 ORTHO05D005191 1.1e-101 374.4 431 51.3
Gohir.D11G274300 Gossypium hirsutum HOM05D004239 ORTHO05D005191 7.2e-101 371.7 411 52.8
MELO3C004281.2 Cucumis melo HOM05D004239 ORTHO05D005191 1.3e-97 360.9 303 64.0
CDE02G3721 Ceratophyllum demersum HOM05D004239 ORTHO05D005191 9.2e-88 328.2 327 52.6
Pp3c22_490 Physcomitrium patens HOM05D004239 ORTHO05D005191 2.1e-84 317.0 445 45.2
Actinidia05711 Actinidia chinensis HOM05D004239 ORTHO05D005191 5.2e-83 312.4 258 64.7
Mapoly0214s0007 Marchantia polymorpha HOM05D004239 ORTHO05D005191 2.8e-76 290.0 470 39.4
HPP92_020860 Vanilla planifolia HOM05D004239 ORTHO05D005191 2.8e-76 290.0 297 52.9
AagrBONN_evm.TU.Sc2ySwM_368.2263 Anthoceros agrestis HOM05D004239 ORTHO05D005191 2.0e-74 283.9 391 43.2
SMO347G0436 Selaginella moellendorffii HOM05D004239 ORTHO05D005191 3.5e-63 246.5 418 39.5
Cfa007056 Carpinus fangiana HOM05D004239 ORTHO05D005191 1.5e-50 204.5 144 79.2
CBR_g3053 Chara braunii HOM05D004239 ORTHO05D005191 3.4e-50 203.4 491 32.0
CSS0049885 Camellia sinensis var. sinensis HOM05D004239 ORTHO05D005191 1.4e-48 198.0 168 64.9
Nitab4.5_0000327g0030 Nicotiana tabacum HOM05D004239 ORTHO05D005191 1.7e-46 191.0 131 77.1
SMO167G0025 Selaginella moellendorffii HOM05D004239 ORTHO05D005191 4.8e-44 183.0 243 44.0
RcHm_v2.0_Chr3g0454481 Rosa chinensis HOM05D004239 ORTHO05D005191 3.1e-43 180.3 128 78.9
vmacro05023 Vaccinium macrocarpon HOM05D004239 ORTHO05D005191 3.8e-41 173.3 200 51.5
Lj5A557G19 Lonicera japonica HOM05D004239 ORTHO05D005191 1.3e-28 131.7 149 53.7
RcHm_v2.0_Chr7g0220941 Rosa chinensis HOM05D004239 ORTHO05D005191 5.3e-27 126.3 89 79.8
Lj5A557T20 Lonicera japonica HOM05D004239 ORTHO05D005191 1.7e-25 121.3 155 49.0
Cfa027123 Carpinus fangiana HOM05D004239 ORTHO05D005191 1.1e-24 118.6 412 28.2
Lj5A555G9 Lonicera japonica HOM05D004239 ORTHO05D005191 4.6e-23 113.2 138 51.4
Zm00001eb063950 Zea mays HOM05D004239 ORTHO05D005191 7.9e-23 112.5 209 36.4
Lj5A556G14 Lonicera japonica HOM05D004239 ORTHO05D005191 1.0e-22 112.1 120 53.3
AagrBONN_evm.TU.Sc2ySwM_117.3520 Anthoceros agrestis HOM05D004239 ORTHO05D005191 7.4e-21 105.9 213 36.6
Lj5A558T15 Lonicera japonica HOM05D004239 ORTHO05D005191 1.8e-19 101.3 82 63.4
Lsat_1_v5_gn_7_76161 Lactuca sativa HOM05D004239 ORTHO05D005191 2.6e-18 97.4 79 63.3
COL.COLO4_16926 Corchorus olitorius HOM05D004239 ORTHO05D005191 7.7e-18 95.9 108 50.9
Actinidia05710 Actinidia chinensis HOM05D004239 ORTHO05D005191 1.0e-17 95.5 79 68.4
Lj5A549T14 Lonicera japonica HOM05D004239 ORTHO05D005191 6.5e-17 92.8 127 50.4
Lj5A552G14 Lonicera japonica HOM05D004239 ORTHO05D005191 6.5e-17 92.8 82 59.8
Lj5A558T16 Lonicera japonica HOM05D004239 ORTHO05D005191 1.2e-15 88.6 127 48.8
Zm00001eb252600 Zea mays HOM05D004239 ORTHO05D005191 1.4e-14 85.1 106 44.3
Lj5A550T6 Lonicera japonica HOM05D004239 ORTHO05D005191 5.7e-13 79.7 125 45.6
CiPaw.07G016300 Carya illinoinensis HOM05D006625 ORTHO05D008060 1.3e-12 78.6 44 84.1
Zm00001eb313220 Zea mays HOM05D004239 ORTHO05D005191 3.7e-12 77.0 81 50.6
COL.COLO4_16925 Corchorus olitorius HOM05D004239 ORTHO05D005191 1.8e-11 74.7 49 67.3
RcHm_v2.0_Chr3g0454471 Rosa chinensis HOM05D004239 ORTHO05D005191 1.0e-09 68.9 36 97.2
Potri.015G125201 Populus trichocarpa HOM05D004239 ORTHO05D005191 1.3e-09 68.6 51 60.8
arahy.Tifrunner.gnm1.ann1.04YHM3 Arachis hypogaea HOM05D004239 ORTHO05D005191 1.7e-09 68.2 100 45.0
Oeu038248.1 Olea europaea HOM05D004239 ORTHO05D288322 3.8e-09 67.0 42 78.6
Zm00001eb406200 Zea mays HOM05D004239 ORTHO05D005191 2.1e-07 61.2 77 45.5
Zm00001eb342830 Zea mays HOM05D004239 ORTHO05D005191 3.0e-06 57.4 38 71.1


User provided reference genes

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