Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN14G1587 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 2342.8 1204 100.0
FvH4_6g04110 Fragaria vesca HOM05D004384 ORTHO05D005797 0.0e+00 2328.9 1204 99.5
FAN05G3638 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 2316.2 1204 98.5
FAN09G2428 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 2309.3 1204 98.3
FAN02G3203 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 2306.9 1204 98.5
FAN09G2922 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 2305.8 1204 98.3
FAN05G1088 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 2301.2 1214 97.4
RcHm_v2.0_Chr3g0452661 Rosa chinensis HOM05D004384 ORTHO05D005797 0.0e+00 2189.8 1207 93.3
Prupe.6G336100 Prunus persica HOM05D004384 ORTHO05D005797 0.0e+00 2013.8 1198 85.5
MD04G1216400 Malus domestica HOM05D004384 ORTHO05D005797 0.0e+00 1951.0 1203 82.5
MD12G1232900 Malus domestica HOM05D004384 ORTHO05D005797 0.0e+00 1933.7 1203 81.9
CANSAT54G2523 Cannabis sativa HOM05D004384 ORTHO05D005797 0.0e+00 1807.0 1198 76.7
CiPaw.07G010400 Carya illinoinensis HOM05D004384 ORTHO05D005797 0.0e+00 1805.8 1206 76.1
Cfa006495 Carpinus fangiana HOM05D004384 ORTHO05D005797 0.0e+00 1804.3 1206 76.8
Dinv04274 Davidia involucrata HOM05D004384 ORTHO05D005797 0.0e+00 1794.6 1204 75.4
QL03p001130 Quercus lobata HOM05D004384 ORTHO05D005797 0.0e+00 1786.9 1201 76.9
Duzib177G1205 Durio zibethinus HOM05D004384 ORTHO05D005797 0.0e+00 1783.5 1212 75.4
Thecc.05G292400 Theobroma cacao HOM05D004384 ORTHO05D005797 0.0e+00 1780.0 1214 75.1
Gohir.A13G171600 Gossypium hirsutum HOM05D004384 ORTHO05D005797 0.0e+00 1768.4 1210 75.2
Nn3g21301 Nelumbo nucifera HOM05D004384 ORTHO05D005797 0.0e+00 1761.1 1207 74.0
Gorai.013G122800 Gossypium raimondii HOM05D004384 ORTHO05D005797 0.0e+00 1760.7 1205 74.4
GSVIVG01021908001 Vitis vinifera HOM05D004384 ORTHO05D005797 0.0e+00 1758.8 1203 74.7
Manes.09G159100 Manihot esculenta HOM05D004384 ORTHO05D005797 0.0e+00 1753.0 1211 74.4
Potri.013G032100 Populus trichocarpa HOM05D004384 ORTHO05D005797 0.0e+00 1751.5 1206 73.5
Cpa.g.sc117.32 Carica papaya HOM05D004384 ORTHO05D005797 0.0e+00 1749.2 1206 74.0
Actinidia05750 Actinidia chinensis HOM05D004384 ORTHO05D005797 0.0e+00 1748.0 1202 73.6
Rhsim10G0110700 Rhododendron simsii HOM05D004384 ORTHO05D005797 0.0e+00 1722.6 1203 72.8
Lj1g0011638 Lotus japonicus HOM05D004384 ORTHO05D005797 0.0e+00 1721.8 1198 73.3
Glyma.19G240700 Glycine max HOM05D004384 ORTHO05D005797 0.0e+00 1717.2 1209 71.6
Glyma.03G243400 Glycine max HOM05D004384 ORTHO05D005797 0.0e+00 1716.0 1224 71.5
Gohir.D13G109200 Gossypium hirsutum HOM05D004384 ORTHO05D005797 0.0e+00 1712.6 1186 73.9
TWI56G1253 Tripterygium wilfordii HOM05D004384 ORTHO05D005797 0.0e+00 1710.7 1208 72.1
Lalb_Chr04g0261021 Lupinus albus HOM05D004384 ORTHO05D005797 0.0e+00 1707.6 1203 72.2
Eucgr.H04418 Eucalyptus grandis HOM05D004384 ORTHO05D005797 0.0e+00 1692.2 1205 71.9
Gorai.013G202700 Gossypium raimondii HOM05D004384 ORTHO05D005797 0.0e+00 1689.9 1210 72.5
Nitab4.5_0000245g0070 Nicotiana tabacum HOM05D004384 ORTHO05D005797 0.0e+00 1688.7 1200 72.4
Sc06g0003540 Simmondsia chinensis HOM05D004384 ORTHO05D005797 0.0e+00 1686.4 1205 70.4
PGR004G0471 Punica granatum HOM05D004384 ORTHO05D005797 0.0e+00 1679.8 1204 71.0
CSS0010917 Camellia sinensis var. sinensis HOM05D004384 ORTHO05D005797 0.0e+00 1679.5 1186 73.2
VMungo0540G2235 Vigna mungo HOM05D004384 ORTHO05D005797 0.0e+00 1677.9 1209 69.6
Ciclev10000072m.g Citrus clementina HOM05D004384 ORTHO05D005797 0.0e+00 1675.6 1206 72.0
Solyc01g098170.3 Solanum lycopersicum HOM05D004384 ORTHO05D005797 0.0e+00 1675.2 1197 71.9
TAR362G1140 Trochodendron aralioides HOM05D004384 ORTHO05D005797 0.0e+00 1672.9 1172 73.0
CAN.G134.202 Capsicum annuum HOM05D004384 ORTHO05D005797 0.0e+00 1669.4 1197 71.9
Hund07007 Selenicereus undatus HOM05D004384 ORTHO05D005797 0.0e+00 1665.6 1203 69.3
Ca_09392_v3 Cicer arietinum L. HOM05D004384 ORTHO05D005797 0.0e+00 1650.6 1165 71.4
TPR.G6955 Trifolium pratense HOM05D004384 ORTHO05D005797 0.0e+00 1649.8 1195 70.0
Psat3g008440 Pisum sativum HOM05D004384 ORTHO05D005797 0.0e+00 1644.0 1196 69.9
Sabra13G0030800 Salix brachista HOM05D004384 ORTHO05D005797 0.0e+00 1640.9 1188 70.1
Gohir.D13G177400 Gossypium hirsutum HOM05D004384 ORTHO05D005797 0.0e+00 1640.6 1210 70.9
Cc02_g32190 Coffea canephora HOM05D004384 ORTHO05D005797 0.0e+00 1639.8 1200 70.5
ClCG02G016280 Citrullus lanatus HOM05D004384 ORTHO05D005797 0.0e+00 1630.5 1206 69.7
CsaV3_2G004460 Cucumis sativus L. HOM05D004384 ORTHO05D005797 0.0e+00 1629.4 1203 69.7
Peaxi162Scf00225g00421 Petunia axillaris HOM05D004384 ORTHO05D005797 0.0e+00 1628.2 1204 70.1
EL10Ac4g09231 Beta vulgaris HOM05D004384 ORTHO05D005797 0.0e+00 1625.1 1200 69.0
Medtr7g114260 Medicago truncatula HOM05D004384 ORTHO05D005797 0.0e+00 1624.4 1195 68.5
THA.LOC104821698 Tarenaya hassleriana HOM05D004384 ORTHO05D005797 0.0e+00 1623.6 1206 68.6
Aa31LG11G8890 Aethionema arabicum HOM05D004384 ORTHO05D005797 0.0e+00 1619.0 1210 67.7
Aqoxy2G03095 Aquilegia oxysepala HOM05D004384 ORTHO05D005797 0.0e+00 1607.0 1205 67.6
MELO3C004347.2 Cucumis melo HOM05D004384 ORTHO05D005797 0.0e+00 1602.8 1203 69.3
Sp2g20420 Schrenkiella parvula HOM05D004384 ORTHO05D005797 0.0e+00 1602.8 1204 67.9
A06p37710 Brassica napus HOM05D004384 ORTHO05D005797 0.0e+00 1601.6 1210 67.3
BraA06t26690Z Brassica rapa HOM05D004384 ORTHO05D005797 0.0e+00 1599.3 1210 67.2
AUR62005028 Chenopodium quinoa HOM05D004384 ORTHO05D005797 0.0e+00 1597.0 1203 67.5
Thhalv10003536m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 0.0e+00 1596.3 1205 67.2
BolC7t44588H Brassica oleracea HOM05D004384 ORTHO05D005797 0.0e+00 1594.7 1205 67.2
DCAR_022275 Daucus carota HOM05D004384 ORTHO05D005797 0.0e+00 1593.6 1204 67.3
C07p40520 Brassica napus HOM05D004384 ORTHO05D005797 0.0e+00 1592.4 1205 67.2
CARHR185780 Cardamine hirsuta HOM05D004384 ORTHO05D005797 0.0e+00 1590.1 1207 66.9
arahy.Tifrunner.gnm1.ann1.KAQB8D Arachis hypogaea HOM05D004384 ORTHO05D005797 0.0e+00 1579.3 1113 71.3
MSTRG.20437 Avicennia marina HOM05D004384 ORTHO05D005797 0.0e+00 1577.4 1200 67.5
Carub.0006s2534 Capsella rubella HOM05D004384 ORTHO05D005797 0.0e+00 1571.6 1210 66.0
PSO170G1333 Papaver somniferum HOM05D004384 ORTHO05D005797 0.0e+00 1569.3 1202 67.0
Sed0012875 Sechium edule HOM05D004384 ORTHO05D005797 0.0e+00 1566.6 1185 68.7
SalBow8G4829 Salvia bowleyana HOM05D004384 ORTHO05D005797 0.0e+00 1565.8 1197 66.8
Ah.06g192860 Amaranthus hybridus HOM05D004384 ORTHO05D005797 0.0e+00 1563.9 1198 66.6
SGA_v2.0_scaffold36G14404 Striga asiatica HOM05D004384 ORTHO05D005797 0.0e+00 1557.7 1208 66.5
AL3G15430 Arabidopsis lyrata HOM05D004384 ORTHO05D005797 0.0e+00 1557.0 1190 66.7
COL.COLO4_13624 Corchorus olitorius HOM05D004384 ORTHO05D005797 0.0e+00 1553.1 1206 67.9
ECA238G0831 Erigeron canadensis HOM05D004384 ORTHO05D005797 0.0e+00 1550.8 1196 65.6
Thhalv10022131m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 0.0e+00 1550.8 1182 66.8
HanXRQChr14g0446631 Helianthus annuus HOM05D004384 ORTHO05D005797 0.0e+00 1548.5 1199 66.1
Lsat_1_v5_gn_2_64920 Lactuca sativa HOM05D004384 ORTHO05D005797 0.0e+00 1541.9 1200 65.8
arahy.Tifrunner.gnm1.ann1.RD3H93 Arachis hypogaea HOM05D004384 ORTHO05D005797 0.0e+00 1538.9 1198 66.3
Nitab4.5_0010351g0010 Nicotiana tabacum HOM05D004384 ORTHO05D005797 0.0e+00 1537.3 1199 67.3
AT3G05040 Arabidopsis thaliana HOM05D004384 ORTHO05D005797 0.0e+00 1533.5 1190 65.9
Migut.B01068 Erythranthe guttata HOM05D004384 ORTHO05D005797 0.0e+00 1531.5 1199 65.2
Carub.0003s0429 Capsella rubella HOM05D004384 ORTHO05D005797 0.0e+00 1503.8 1188 65.4
Oeu053262.1 Olea europaea HOM05D004384 ORTHO05D005797 0.0e+00 1486.5 1254 63.0
AUR62000939 Chenopodium quinoa HOM05D004384 ORTHO05D005797 0.0e+00 1439.9 1136 65.4
Phvul.006G097400 Phaseolus vulgaris HOM05D004384 ORTHO05D005797 0.0e+00 1432.9 1025 70.6
CDE01G0361 Ceratophyllum demersum HOM05D004384 ORTHO05D005797 0.0e+00 1431.8 1182 62.9
vmacro05244 Vaccinium macrocarpon HOM05D004384 ORTHO05D005797 0.0e+00 1417.5 1293 59.8
Lj7A481G46 Lonicera japonica HOM05D004384 ORTHO05D005797 0.0e+00 1411.0 982 73.3
Sp3g03870 Schrenkiella parvula HOM05D004384 ORTHO05D005797 0.0e+00 1381.7 1137 62.4
BcaNung04267 Brassica carinata HOM05D004384 ORTHO05D005797 0.0e+00 1365.9 1202 61.0
Zm00001eb341370 Zea mays HOM05D004384 ORTHO05D005797 0.0e+00 1356.3 1204 59.1
ATR0618G249 Amborella trichopoda HOM05D004384 ORTHO05D005797 0.0e+00 1349.7 1180 59.5
Os01g0363900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 0.0e+00 1335.1 1203 58.1
unitig_0.g2222 Utricularia gibba HOM05D004384 ORTHO05D005797 0.0e+00 1301.6 1210 57.3
Aqoxy179s001 Aquilegia oxysepala HOM05D004384 ORTHO05D005797 0.0e+00 1245.0 1051 62.4
CARHR079360 Cardamine hirsuta HOM05D004384 ORTHO05D005797 0.0e+00 1170.2 889 67.0
Atru.chr2.639 Acer truncatum HOM05D004384 ORTHO05D005797 0.0e+00 1169.8 961 65.1
Haze_04294 Corylus avellana HOM05D004384 ORTHO05D005797 0.0e+00 1141.7 834 71.3
Sopen01g041740 Solanum pennellii HOM05D004384 ORTHO05D005797 0.0e+00 1129.8 816 71.6
Medtr1g063040 Medicago truncatula HOM05D004384 ORTHO05D005797 0.0e+00 1088.6 1150 53.7
Pp3c11_26800 Physcomitrium patens HOM05D004384 ORTHO05D005797 2.1e-265 919.8 1220 43.1
Pp3c7_3740 Physcomitrium patens HOM05D004384 ORTHO05D005797 2.3e-264 916.4 1219 43.3
Mapoly0015s0189 Marchantia polymorpha HOM05D004384 ORTHO05D005797 8.2e-262 907.9 1214 43.8
Sopen00g006580 Solanum pennellii HOM05D004384 ORTHO05D005797 1.9e-250 870.2 648 69.8
BolC1t05723H Brassica oleracea HOM05D004384 ORTHO05D005797 2.5e-250 869.8 1196 44.4
BcaB04g21343 Brassica carinata HOM05D004384 ORTHO05D005797 2.8e-241 839.7 1180 43.6
BNapus_Darmor_BZH_scaffold_78p01040 Brassica napus HOM05D004384 ORTHO05D005797 4.7e-241 839.0 1159 43.6
BraA01t04501Z Brassica rapa HOM05D004384 ORTHO05D005797 2.2e-238 830.1 1159 43.3
SMO145G0253 Selaginella moellendorffii HOM05D004384 ORTHO05D005797 1.9e-234 817.0 1182 40.4
BcaC05g29989 Brassica carinata HOM05D004384 ORTHO05D005797 9.5e-226 788.1 993 47.1
SEGI_22518 Sequoiadendron giganteum HOM05D004384 ORTHO05D005797 3.3e-218 763.1 796 52.0
AagrBONN_evm.TU.Sc2ySwM_340.422 Anthoceros agrestis HOM05D004384 ORTHO05D005797 7.3e-210 735.3 1217 37.4
Actinidia30910 Actinidia chinensis HOM05D004384 ORTHO05D005797 2.9e-206 723.4 600 63.8
HPP92_011287 Vanilla planifolia HOM05D004384 ORTHO05D005797 1.8e-192 677.6 635 55.7
HPP92_011308 Vanilla planifolia HOM05D004384 ORTHO05D005797 2.5e-189 667.2 569 60.3
HPP92_011286 Vanilla planifolia HOM05D004384 ORTHO05D005797 3.8e-174 616.7 538 58.7
Haze_04301 Corylus avellana HOM05D004384 ORTHO05D005797 9.1e-168 595.5 481 66.9
Gohir.A13G106433 Gossypium hirsutum HOM05D004384 ORTHO05D005797 5.9e-167 592.8 418 72.2
HPP92_011309 Vanilla planifolia HOM05D004384 ORTHO05D005797 1.0e-147 528.9 486 56.4
PGSC0003DMG400022491 Solanum tuberosum HOM05D004384 ORTHO05D005797 5.9e-127 459.9 319 73.7
Sopen01g041750 Solanum pennellii HOM05D004384 ORTHO05D005797 8.3e-113 412.9 295 71.9
MCO07G327 Micromonas commoda HOM05D004384 ORTHO05D005797 2.4e-83 315.1 1384 23.9
Sopen00g006590 Solanum pennellii HOM05D004384 ORTHO05D005797 5.1e-78 297.4 210 71.0
Glyma.02G183700 Glycine max HOM05D004384 ORTHO05D005797 1.9e-77 295.4 210 69.0
SEGI_23591 Sequoiadendron giganteum HOM05D004384 ORTHO05D005797 7.4e-77 293.5 263 55.5
Lj7C481T10 Lonicera japonica HOM05D004384 ORTHO05D005797 4.2e-64 251.1 195 66.7
arahy.Tifrunner.gnm1.ann1.2MX35J Arachis hypogaea HOM05D000319 ORTHO05D002646 2.5e-61 241.9 215 60.5
Os11g0513900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 3.7e-52 211.5 461 32.1
Os11g0518900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 1.0e-49 203.4 436 32.6
CSS0044605 Camellia sinensis var. sinensis HOM05D004384 ORTHO05D005797 3.1e-43 181.8 109 83.5
Ciclev10003957m.g Citrus clementina HOM05D004384 ORTHO05D005797 1.7e-25 122.9 96 68.8
MBI18_g14725_MAGBIO Magnolia biondii HOM05D004384 ORTHO05D005797 7.0e-19 100.9 74 68.9
Os11g0517800 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D299849 9.2e-19 100.5 213 32.9
FvH4_6g04501 Fragaria vesca HOM05D004384 ORTHO05D005797 1.2e-18 100.1 172 44.2
Cre10.g420400 Chlamydomonas reinhardtii HOM05D004384 ORTHO05D005797 5.6e-16 91.3 558 22.6
BcaC03g17773 Brassica carinata HOM05D004384 ORTHO05D005797 9.5e-16 90.5 90 53.3
Lsat_1_v5_gn_5_147500 Lactuca sativa HOM05D001610 ORTHO05D005797 8.0e-15 87.4 73 60.3
C02p57890 Brassica napus HOM05D004384 ORTHO05D005797 6.8e-14 84.3 63 69.8
CAN.G124.14 Capsicum annuum HOM05D004384 ORTHO05D022156 2.2e-12 79.3 50 82.0
CAN.G37.9 Capsicum annuum HOM05D001673 ORTHO05D013418 2.2e-12 79.3 50 82.0
BcaNung06429 Brassica carinata HOM05D004384 ORTHO05D005797 3.7e-12 78.6 79 49.4
BolC2t11857H Brassica oleracea HOM05D004384 ORTHO05D005797 6.4e-12 77.8 79 55.7
Medtr7g062520 Medicago truncatula HOM05D004384 ORTHO05D005797 2.4e-11 75.9 62 64.5
HPP92_011310 Vanilla planifolia HOM05D004384 ORTHO05D005797 4.1e-11 75.1 69 58.0
BraA01t04627Z Brassica rapa HOM05D004384 ORTHO05D005797 1.2e-10 73.6 69 52.2
Thhalv10011164m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 4.6e-10 71.6 76 46.1
Cre10.g420250 Chlamydomonas reinhardtii HOM05D004384 ORTHO05D005797 3.0e-09 68.9 182 29.7
A05p42530 Brassica napus HOM05D004384 ORTHO05D005797 1.9e-08 66.2 54 64.8
BraA05t22999Z Brassica rapa HOM05D004384 ORTHO05D005797 1.9e-08 66.2 54 64.8
Os11g0519500 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D300109 9.5e-08 63.9 343 23.3
Lsat_1_v5_gn_5_15721 Lactuca sativa HOM05D001610 ORTHO05D001585 2.8e-07 62.4 48 62.5
CAN.G473.63 Capsicum annuum HOM05D004384 ORTHO05D115006 1.0e-06 60.5 36 77.8
Sabra13G0031800 Salix brachista HOM05D004384 ORTHO05D037489 1.0e-06 60.5 108 37.0
CAN.G71.10 Capsicum annuum HOM05D001871 ORTHO05D002022 3.1e-06 58.9 83 44.6
Sabra13G0031100 Salix brachista HOM05D004384 ORTHO05D037489 3.1e-06 58.9 89 40.4


User provided reference genes

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