Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN14G1566 Fragaria x ananassa HOM05D006727 ORTHO05D008408 3.8e-128 461.5 225 100.0
FvH4_6g10100 Fragaria vesca HOM05D006727 ORTHO05D008408 2.1e-126 455.7 225 98.7
FAN02G0358 Fragaria x ananassa HOM05D006727 ORTHO05D008408 1.5e-124 449.5 225 96.9
FAN05G1856 Fragaria x ananassa HOM05D006727 ORTHO05D008408 6.3e-123 444.1 225 96.0
FAN05G4632 Fragaria x ananassa HOM05D006727 ORTHO05D008408 1.2e-121 439.9 225 95.1
RcHm_v2.0_Chr3g0460801 Rosa chinensis HOM05D006727 ORTHO05D008408 2.9e-120 435.3 225 93.8
Prupe.6G291700 Prunus persica HOM05D006727 ORTHO05D008408 3.5e-113 411.8 225 88.0
MD12G1186200 Malus domestica HOM05D006727 ORTHO05D008408 2.9e-112 408.7 226 88.1
MD04G1172900 Malus domestica HOM05D006727 ORTHO05D008408 1.0e-109 400.2 224 84.4
Manes.09G116800 Manihot esculenta HOM05D006727 ORTHO05D008408 2.6e-108 395.6 225 85.3
Gorai.011G128700 Gossypium raimondii HOM05D006727 ORTHO05D008408 2.7e-105 385.6 215 85.1
Thecc.04G153700 Theobroma cacao HOM05D006727 ORTHO05D008408 3.5e-105 385.2 215 85.6
Gohir.A10G149900 Gossypium hirsutum HOM05D006727 ORTHO05D008408 7.7e-105 384.0 215 84.7
Gohir.D10G116900 Gossypium hirsutum HOM05D006727 ORTHO05D008408 1.3e-104 383.3 215 84.7
Duzib212G0227 Durio zibethinus HOM05D006727 ORTHO05D008408 6.6e-104 380.9 215 84.7
QL07p032522 Quercus lobata HOM05D006727 ORTHO05D008408 1.1e-103 380.2 211 83.9
CSS0002185 Camellia sinensis var. sinensis HOM05D006727 ORTHO05D008408 2.5e-103 379.0 223 81.6
Cfa017053 Carpinus fangiana HOM05D006727 ORTHO05D008408 2.5e-103 379.0 226 80.5
Dinv11373 Davidia involucrata HOM05D006727 ORTHO05D008408 1.2e-102 376.7 217 82.9
CSS0012941 Camellia sinensis var. sinensis HOM05D006727 ORTHO05D008408 1.6e-102 376.3 223 80.7
Dinv25328 Davidia involucrata HOM05D006727 ORTHO05D008408 2.3e-101 372.5 217 82.9
GSVIVG01030200001 Vitis vinifera HOM05D006727 ORTHO05D008408 8.9e-101 370.5 212 82.1
COL.COLO4_16540 Corchorus olitorius HOM05D006727 ORTHO05D008408 1.2e-100 370.2 214 81.8
Potri.016G134700 Populus trichocarpa HOM05D006727 ORTHO05D008408 1.2e-100 370.2 206 83.0
Atru.chr8.2386 Acer truncatum HOM05D006727 ORTHO05D008408 3.4e-100 368.6 219 79.0
TAR220G0001 Trochodendron aralioides HOM05D006727 ORTHO05D008408 4.4e-100 368.2 215 80.0
CiPaw.09G219900 Carya illinoinensis HOM05D006727 ORTHO05D008408 1.3e-99 366.7 225 79.1
TWI53G1665 Tripterygium wilfordii HOM05D006727 ORTHO05D008408 1.3e-99 366.7 225 78.7
HanXRQChr01g0000191 Helianthus annuus HOM05D006727 ORTHO05D008408 4.9e-99 364.8 226 78.8
Aqoxy4G02378 Aquilegia oxysepala HOM05D006727 ORTHO05D008408 6.4e-99 364.4 219 81.3
PGR004G2541 Punica granatum HOM05D006727 ORTHO05D008408 8.3e-99 364.0 217 80.2
MELO3C009112.2 Cucumis melo HOM05D006727 ORTHO05D008408 1.8e-98 362.8 214 80.4
Rhsim05G0229700 Rhododendron simsii HOM05D006727 ORTHO05D008408 2.4e-98 362.5 218 82.1
Sabra04G0152100 Salix brachista HOM05D006727 ORTHO05D008408 2.4e-98 362.5 227 75.8
Hund03725 Selenicereus undatus HOM05D006727 ORTHO05D008408 2.4e-98 362.5 225 76.4
PSO017G7044 Papaver somniferum HOM05D006727 ORTHO05D008408 4.1e-98 361.7 215 78.1
CANSAT35G0523 Cannabis sativa HOM05D006727 ORTHO05D008408 5.4e-98 361.3 221 78.7
Nitab4.5_0000950g0010 Nicotiana tabacum HOM05D006727 ORTHO05D008408 7.0e-98 360.9 220 76.4
Peaxi162Scf00732g00434 Petunia axillaris HOM05D006727 ORTHO05D008408 1.2e-97 360.1 216 77.8
CsaV3_3G033190 Cucumis sativus L. HOM05D006727 ORTHO05D008408 1.6e-97 359.8 214 79.0
Phvul.008G083900 Phaseolus vulgaris HOM05D006727 ORTHO05D008408 3.5e-97 358.6 225 76.4
Migut.J00054 Erythranthe guttata HOM05D006727 ORTHO05D008408 7.8e-97 357.5 217 77.9
Sc19g0002650 Simmondsia chinensis HOM05D006727 ORTHO05D008408 7.8e-97 357.5 225 75.6
THA.LOC104823356 Tarenaya hassleriana HOM05D006727 ORTHO05D008408 7.8e-97 357.5 214 77.1
SGA_v2.0_scaffold373G50173 Striga asiatica HOM05D006727 ORTHO05D008408 2.9e-96 355.5 225 75.6
Sed0012883 Sechium edule HOM05D006727 ORTHO05D008408 5.0e-96 354.8 211 78.7
Lalb_Chr19g0124021 Lupinus albus HOM05D006727 ORTHO05D008408 6.6e-96 354.4 217 77.9
arahy.Tifrunner.gnm1.ann1.U8U4T8 Arachis hypogaea HOM05D006727 ORTHO05D008408 1.1e-95 353.6 218 76.1
arahy.Tifrunner.gnm1.ann1.SP3HKJ Arachis hypogaea HOM05D006727 ORTHO05D008408 1.5e-95 353.2 218 76.1
Glyma.18G215000 Glycine max HOM05D006727 ORTHO05D008408 2.5e-95 352.4 219 76.7
Ciclev10012697m.g Citrus clementina HOM05D006727 ORTHO05D008408 4.3e-95 351.7 219 75.8
ECA248G2137 Erigeron canadensis HOM05D006727 ORTHO05D008408 7.3e-95 350.9 199 83.9
Lsat_1_v5_gn_5_150061 Lactuca sativa HOM05D006727 ORTHO05D008408 7.3e-95 350.9 214 79.9
Eucgr.K01278 Eucalyptus grandis HOM05D006727 ORTHO05D008408 1.2e-94 350.1 224 74.1
Lj1g0012647 Lotus japonicus HOM05D006727 ORTHO05D008408 3.6e-94 348.6 205 77.1
EL10Ac7g17073 Beta vulgaris HOM05D006727 ORTHO05D008408 6.2e-94 347.8 206 80.6
Cc06_g00470 Coffea canephora HOM05D006727 ORTHO05D008408 6.2e-94 347.8 200 80.5
TPR.G26930 Trifolium pratense HOM05D006727 ORTHO05D008408 4.0e-93 345.1 215 75.3
Glyma.09G276200 Glycine max HOM05D006727 ORTHO05D008408 6.8e-93 344.4 222 74.8
Medtr7g072680 Medicago truncatula HOM05D006727 ORTHO05D008408 1.5e-92 343.2 205 77.6
MSTRG.18948 Avicennia marina HOM05D006727 ORTHO05D008408 4.4e-92 341.7 214 74.8
Aa31sc296G30 Aethionema arabicum HOM05D006727 ORTHO05D008408 7.5e-92 340.9 219 74.4
Psat3g120440 Pisum sativum HOM05D006727 ORTHO05D008408 3.7e-91 338.6 214 74.3
Zm00001eb281990 Zea mays HOM05D006727 ORTHO05D008408 6.4e-91 337.8 217 72.4
CARHR161200 Cardamine hirsuta HOM05D006727 ORTHO05D008408 9.2e-90 334.0 212 75.0
Thhalv10010694m.g Eutrema salsugineum HOM05D006727 ORTHO05D008408 1.6e-89 333.2 211 75.4
HPP92_001138 Vanilla planifolia HOM05D006727 ORTHO05D008408 1.6e-89 333.2 225 68.9
FAN09G3050 Fragaria x ananassa HOM05D006727 ORTHO05D008408 7.8e-89 330.9 171 93.0
AT3G51610 Arabidopsis thaliana HOM05D006727 ORTHO05D008408 1.7e-88 329.7 200 77.0
BcaNung00375 Brassica carinata HOM05D006727 ORTHO05D008408 2.3e-88 329.3 219 72.1
C01p28960 Brassica napus HOM05D006727 ORTHO05D008408 2.3e-88 329.3 227 71.4
AL5G32050 Arabidopsis lyrata HOM05D006727 ORTHO05D008408 3.0e-88 328.9 200 76.5
BcaC09g50100 Brassica carinata HOM05D006727 ORTHO05D008408 3.0e-88 328.9 227 71.4
BolC1t02827H Brassica oleracea HOM05D006727 ORTHO05D008408 3.0e-88 328.9 227 71.4
ATR0681G348 Amborella trichopoda HOM05D006727 ORTHO05D008408 8.6e-88 327.4 208 72.1
A01p23320 Brassica napus HOM05D006727 ORTHO05D008408 1.1e-87 327.0 230 70.9
BraA01t02241Z Brassica rapa HOM05D006727 ORTHO05D008408 1.1e-87 327.0 230 70.9
Haze_21159 Corylus avellana HOM05D006727 ORTHO05D008408 1.6e-86 323.2 178 84.8
Carub.0005s1797 Capsella rubella HOM05D006727 ORTHO05D008408 4.7e-86 321.6 212 73.1
Os05g0168400 Oryza sativa ssp. japonica HOM05D006727 ORTHO05D008408 2.3e-85 319.3 210 71.0
vmacro20362 Vaccinium macrocarpon HOM05D006727 ORTHO05D008408 2.0e-84 316.2 222 72.5
PSO170G4157 Papaver somniferum HOM05D006727 ORTHO05D008408 4.4e-84 315.1 178 80.3
CDE04G1801 Ceratophyllum demersum HOM05D006727 ORTHO05D008408 1.0e-80 303.9 187 72.2
Oeu026955.4 Olea europaea HOM05D006727 ORTHO05D008408 3.0e-80 302.4 260 58.8
Nn2g10333 Nelumbo nucifera HOM05D006727 ORTHO05D008408 3.9e-80 302.0 182 76.9
Ah.15g090120 Amaranthus hybridus HOM05D006727 ORTHO05D008408 1.9e-79 299.7 218 70.6
Sp5g10660 Schrenkiella parvula HOM05D006727 ORTHO05D008408 1.7e-75 286.6 179 74.3
unitig_749.g14090 Utricularia gibba HOM05D006727 ORTHO05D008408 3.2e-74 282.3 186 70.4
TAR623G1271 Trochodendron aralioides HOM05D006727 ORTHO05D008408 2.8e-70 269.2 218 65.1
CAN.G119.2 Capsicum annuum HOM05D006727 ORTHO05D008408 2.4e-69 266.2 152 78.9
Mapoly0003s0079 Marchantia polymorpha HOM05D006727 ORTHO05D008408 4.4e-68 261.9 222 55.0
ClCG10G022640 Citrullus lanatus HOM05D006727 ORTHO05D008408 7.8e-65 251.1 222 61.7
SMO356G0277 Selaginella moellendorffii HOM05D006727 ORTHO05D008408 1.9e-63 246.5 192 56.8
Pp3c2_32200 Physcomitrium patens HOM05D006727 ORTHO05D008408 6.2e-62 241.5 220 53.2
AUR62006372 Chenopodium quinoa HOM05D006727 ORTHO05D008408 1.1e-61 240.7 206 59.7
Nitab4.5_0000330g0040 Nicotiana tabacum HOM05D006727 ORTHO05D008408 3.4e-60 235.7 140 77.1
Actinidia20787 Actinidia chinensis HOM05D006727 ORTHO05D008408 4.9e-59 231.9 129 82.9
Ca_07756_v3 Cicer arietinum L. HOM05D006727 ORTHO05D008408 1.3e-51 207.2 140 69.3
SHI12925 Sapria himalayana HOM05D006727 ORTHO05D008408 3.9e-48 195.7 137 70.1
Sopen03g037430 Solanum pennellii HOM05D006727 ORTHO05D008408 1.8e-45 186.8 115 75.7
AagrBONN_evm.TU.Sc2ySwM_344.2624 Anthoceros agrestis HOM05D006727 ORTHO05D008408 1.7e-43 180.3 155 51.0
Oeu060435.2 Olea europaea HOM05D006727 ORTHO05D008408 2.1e-41 173.3 103 76.7
Cre01.g049450 Chlamydomonas reinhardtii HOM05D006727 ORTHO05D008408 5.7e-39 165.2 216 37.5
BraA09t39934Z Brassica rapa HOM05D006727 ORTHO05D008408 2.2e-35 153.3 128 61.7
A09p44730 Brassica napus HOM05D006727 ORTHO05D008408 1.9e-34 150.2 128 59.4
PRCOL_00001207 Prasinoderma coloniale HOM05D006727 ORTHO05D008408 8.7e-32 141.4 223 30.0
MCO09G625 Micromonas commoda HOM05D006727 ORTHO05D008408 7.7e-28 128.3 170 33.5
AagrBONN_evm.TU.Sc2ySwM_344.2622 Anthoceros agrestis HOM05D006727 ORTHO05D008408 2.9e-27 126.3 107 51.4
Solyc03g118520.4 Solanum lycopersicum HOM05D006727 ORTHO05D008408 3.8e-27 125.9 88 71.6
PSO017G2966 Papaver somniferum HOM05D004863 ORTHO05D005802 1.1e-26 124.4 75 76.0
Sopen03g037400 Solanum pennellii HOM05D006727 ORTHO05D008408 1.6e-25 120.6 83 71.1
SEGI_08771 Sequoiadendron giganteum HOM05D006727 ORTHO05D008408 1.3e-22 110.9 58 75.9
AL1G25050 Arabidopsis lyrata HOM05D006727 ORTHO05D008408 3.4e-20 102.8 64 75.0
AL8G15680 Arabidopsis lyrata HOM05D006727 ORTHO05D008408 3.2e-18 96.3 51 80.4
BolC8t50296H Brassica oleracea HOM05D006727 ORTHO05D008408 7.9e-17 91.7 71 60.6
MD12G1088300 Malus domestica HOM05D006727 ORTHO05D008408 6.7e-16 88.6 70 68.6
CBR_g50885 Chara braunii HOM05D006727 ORTHO05D008408 1.1e-15 87.8 126 36.5
Carub.0007s3202 Capsella rubella HOM05D006727 ORTHO05D008408 1.7e-11 73.9 58 69.0
A03p48380 Brassica napus HOM05D023373 ORTHO05D024557 8.8e-08 61.6 93 44.1


User provided reference genes

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