Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN14G1555 Fragaria x ananassa HOM05D005608 ORTHO05D007543 4.1e-175 617.8 293 100.0
FvH4_6g24520 Fragaria vesca HOM05D005608 ORTHO05D007543 1.4e-170 602.8 293 98.3
FAN02G1028 Fragaria x ananassa HOM05D005608 ORTHO05D007543 4.2e-167 591.3 291 96.6
FAN05G0975 Fragaria x ananassa HOM05D005608 ORTHO05D007543 3.5e-166 588.2 293 96.2
RcHm_v2.0_Chr3g0483631 Rosa chinensis HOM05D005608 ORTHO05D007543 1.3e-160 569.7 293 91.8
Prupe.7G053400 Prunus persica HOM05D005608 ORTHO05D007543 9.3e-151 537.0 289 88.2
Manes.08G052000 Manihot esculenta HOM05D005608 ORTHO05D007543 8.2e-147 523.9 286 85.7
MD14G1077300 Malus domestica HOM05D005608 ORTHO05D007543 1.4e-146 523.1 287 84.7
GSVIVG01033232001 Vitis vinifera HOM05D005608 ORTHO05D007543 1.2e-145 520.0 290 82.8
CiPaw.09G040300 Carya illinoinensis HOM05D005608 ORTHO05D007543 5.8e-145 517.7 286 85.0
Atru.chr1.1230 Acer truncatum HOM05D005608 ORTHO05D007543 1.3e-144 516.5 286 84.6
QL07p003736 Quercus lobata HOM05D005608 ORTHO05D007543 2.2e-144 515.8 286 84.3
CANSAT80G2626 Cannabis sativa HOM05D005608 ORTHO05D007543 2.5e-143 512.3 288 83.7
Gohir.D01G184100 Gossypium hirsutum HOM05D005608 ORTHO05D007543 2.5e-143 512.3 286 84.3
Gorai.002G227600 Gossypium raimondii HOM05D005608 ORTHO05D007543 2.5e-143 512.3 286 84.3
Gohir.A01G193800 Gossypium hirsutum HOM05D005608 ORTHO05D007543 4.2e-143 511.5 286 83.2
Duzib106G2070 Durio zibethinus HOM05D005608 ORTHO05D007543 5.5e-143 511.1 286 83.6
TAR369G0715 Trochodendron aralioides HOM05D005608 ORTHO05D007543 5.5e-143 511.1 285 84.6
PSO339G6269 Papaver somniferum HOM05D005608 ORTHO05D007543 2.1e-142 509.2 288 83.0
CAN.G676.7 Capsicum annuum HOM05D005608 ORTHO05D007543 2.7e-142 508.8 286 82.9
Thecc.05G148100 Theobroma cacao HOM05D005608 ORTHO05D007543 2.7e-142 508.8 286 82.2
PSO384G3225 Papaver somniferum HOM05D005608 ORTHO05D007543 3.5e-142 508.4 288 82.6
Nn2g15128 Nelumbo nucifera HOM05D005608 ORTHO05D007543 4.6e-142 508.1 284 83.5
Sabra06G0032700 Salix brachista HOM05D005608 ORTHO05D007543 6.0e-142 507.7 286 82.9
Ciclev10005572m.g Citrus clementina HOM05D005608 ORTHO05D007543 1.0e-141 506.9 286 83.2
TWI77G0221 Tripterygium wilfordii HOM05D005608 ORTHO05D007543 1.8e-141 506.1 286 81.1
TAR369G0194 Trochodendron aralioides HOM05D005608 ORTHO05D007543 1.8e-141 506.1 285 83.9
EL10Ac3g07137 Beta vulgaris HOM05D005608 ORTHO05D007543 2.3e-141 505.8 286 83.2
Haze_19791 Corylus avellana HOM05D005608 ORTHO05D007543 3.0e-141 505.4 286 82.9
Haze_19795 Corylus avellana HOM05D005608 ORTHO05D007543 3.0e-141 505.4 286 82.9
Cfa016779 Carpinus fangiana HOM05D005608 ORTHO05D007543 5.1e-141 504.6 286 82.9
Potri.006G047000 Populus trichocarpa HOM05D005608 ORTHO05D007543 6.7e-141 504.2 286 82.2
CANSAT80G0897 Cannabis sativa HOM05D005608 ORTHO05D007543 8.7e-141 503.8 293 81.9
Lj5g0018305 Lotus japonicus HOM05D005608 ORTHO05D007543 8.7e-141 503.8 290 80.7
CSS0026365 Camellia sinensis var. sinensis HOM05D005608 ORTHO05D007543 1.1e-140 503.4 286 80.8
Actinidia39202 Actinidia chinensis HOM05D005608 ORTHO05D007543 1.9e-140 502.7 286 80.8
Oeu017928.1 Olea europaea HOM05D005608 ORTHO05D007543 1.9e-140 502.7 284 81.0
Nitab4.5_0001618g0150 Nicotiana tabacum HOM05D005608 ORTHO05D007543 2.5e-140 502.3 286 81.5
Phvul.007G250500 Phaseolus vulgaris HOM05D005608 ORTHO05D007543 2.5e-140 502.3 286 81.1
TAR633G2234 Trochodendron aralioides HOM05D005608 ORTHO05D007543 3.3e-140 501.9 284 83.5
Cc06_g18100 Coffea canephora HOM05D005608 ORTHO05D007543 4.3e-140 501.5 286 82.2
Aqoxy2G00245 Aquilegia oxysepala HOM05D005608 ORTHO05D007543 5.7e-140 501.1 286 80.4
DCAR_013613 Daucus carota HOM05D005608 ORTHO05D007543 5.7e-140 501.1 288 80.2
PGSC0003DMG401012699 Solanum tuberosum HOM05D005608 ORTHO05D007543 7.4e-140 500.7 286 81.1
Rhsim03G0028900 Rhododendron simsii HOM05D005608 ORTHO05D007543 9.7e-140 500.4 290 81.7
vmacro21968 Vaccinium macrocarpon HOM05D005608 ORTHO05D007543 1.3e-139 500.0 286 80.4
Lj1A1125T63 Lonicera japonica HOM05D005608 ORTHO05D007543 1.6e-139 499.6 289 81.7
Hma1.2p1_0110F.1_g052840 Hydrangea macrophylla HOM05D005608 ORTHO05D007543 3.7e-139 498.4 286 80.1
Hma1.2p1_1997F.1_g310445 Hydrangea macrophylla HOM05D005608 ORTHO05D007543 3.7e-139 498.4 286 80.1
Sc19g0008540 Simmondsia chinensis HOM05D005608 ORTHO05D007543 3.7e-139 498.4 286 81.1
Nitab4.5_0000826g0060 Nicotiana tabacum HOM05D005608 ORTHO05D007543 8.2e-139 497.3 286 81.1
Solyc04g016360.3 Solanum lycopersicum HOM05D005608 ORTHO05D007543 1.1e-138 496.9 286 81.1
Glyma.10G106900 Glycine max HOM05D005608 ORTHO05D007543 1.8e-138 496.1 285 80.7
Eucgr.K02019 Eucalyptus grandis HOM05D005608 ORTHO05D007543 2.4e-138 495.7 288 81.6
MELO3C026333.2 Cucumis melo HOM05D005608 ORTHO05D007543 3.1e-138 495.4 287 78.7
Glyma.02G186700 Glycine max HOM05D005608 ORTHO05D007543 4.1e-138 495.0 286 80.4
Sed0023334 Sechium edule HOM05D005608 ORTHO05D007543 5.3e-138 494.6 287 78.4
AUR62026096 Chenopodium quinoa HOM05D005608 ORTHO05D007543 1.5e-137 493.0 300 78.3
CsaV3_4G027510 Cucumis sativus L. HOM05D005608 ORTHO05D007543 1.5e-137 493.0 287 78.4
Sopen04g008450 Solanum pennellii HOM05D005608 ORTHO05D007543 1.5e-137 493.0 286 80.1
MSTRG.19838 Avicennia marina HOM05D005608 ORTHO05D007543 2.6e-137 492.3 284 79.9
Lalb_Chr06g0173501 Lupinus albus HOM05D005608 ORTHO05D007543 2.6e-137 492.3 287 81.5
SalBow6G4364 Salvia bowleyana HOM05D005608 ORTHO05D007543 4.5e-137 491.5 284 80.3
HanXRQChr04g0125051 Helianthus annuus HOM05D005608 ORTHO05D007543 2.9e-136 488.8 287 80.1
Hund24681 Selenicereus undatus HOM05D005608 ORTHO05D007543 2.9e-136 488.8 286 79.4
VMungo0720G2960 Vigna mungo HOM05D005608 ORTHO05D007543 3.8e-136 488.4 286 78.7
TPR.G19657 Trifolium pratense HOM05D005608 ORTHO05D007543 7.2e-135 484.2 282 80.1
Medtr1g052175 Medicago truncatula HOM05D005608 ORTHO05D007543 1.6e-134 483.0 282 79.8
Aa31LG1G23580 Aethionema arabicum HOM05D005608 ORTHO05D007543 2.1e-134 482.6 287 79.4
CARHR136660 Cardamine hirsuta HOM05D005608 ORTHO05D007543 4.6e-134 481.5 282 79.4
Thhalv10017045m.g Eutrema salsugineum HOM05D005608 ORTHO05D007543 4.6e-134 481.5 282 78.7
arahy.Tifrunner.gnm1.ann1.RCN63F Arachis hypogaea HOM05D005608 ORTHO05D007543 7.9e-134 480.7 285 79.6
Medtr4g008660 Medicago truncatula HOM05D005608 ORTHO05D007543 1.0e-133 480.3 282 79.8
THA.LOC104801987 Tarenaya hassleriana HOM05D005608 ORTHO05D007543 1.8e-133 479.6 286 77.6
BcaNung04068 Brassica carinata HOM05D005608 ORTHO05D007543 2.3e-133 479.2 282 79.1
ECA236G2378 Erigeron canadensis HOM05D005608 ORTHO05D007543 2.3e-133 479.2 273 81.3
AT2G41530 Arabidopsis thaliana HOM05D005608 ORTHO05D007543 3.0e-133 478.8 282 79.4
MSTRG.26133 Avicennia marina HOM05D005608 ORTHO05D007543 3.0e-133 478.8 286 77.3
Ca_12257_v3 Cicer arietinum L. HOM05D005608 ORTHO05D007543 3.0e-133 478.8 281 80.1
Migut.J01725 Erythranthe guttata HOM05D005608 ORTHO05D007543 5.1e-133 478.0 284 77.5
arahy.Tifrunner.gnm1.ann1.QZL5XH Arachis hypogaea HOM05D005608 ORTHO05D007543 8.8e-133 477.2 296 76.7
Sp4g23810 Schrenkiella parvula HOM05D005608 ORTHO05D007543 8.8e-133 477.2 282 78.0
SGA_v2.0_scaffold273G46432 Striga asiatica HOM05D005608 ORTHO05D007543 1.5e-132 476.5 275 79.6
AL4G39630 Arabidopsis lyrata HOM05D005608 ORTHO05D007543 2.0e-132 476.1 282 79.1
CDE05G0378 Ceratophyllum demersum HOM05D005608 ORTHO05D007543 2.5e-132 475.7 284 77.8
BcaB01g03463 Brassica carinata HOM05D005608 ORTHO05D007543 4.3e-132 474.9 282 77.7
Peaxi162Scf00130g00829 Petunia axillaris HOM05D005608 ORTHO05D007543 2.8e-131 472.2 286 76.9
Carub.0004s2382 Capsella rubella HOM05D005608 ORTHO05D007543 4.8e-131 471.5 282 78.0
BcaC01g05330 Brassica carinata HOM05D005608 ORTHO05D007543 6.3e-131 471.1 282 77.3
Ca_12243_v3 Cicer arietinum L. HOM05D005608 ORTHO05D007543 1.4e-130 469.9 285 77.9
A03p23310 Brassica napus HOM05D005608 ORTHO05D007543 1.8e-130 469.5 282 76.6
C03p27830 Brassica napus HOM05D005608 ORTHO05D007543 1.8e-130 469.5 282 77.3
BraA03t11549Z Brassica rapa HOM05D005608 ORTHO05D007543 1.8e-130 469.5 282 76.6
BolC3t15154H Brassica oleracea HOM05D005608 ORTHO05D007543 3.1e-130 468.8 282 77.0
Peaxi162Scf00130g00828 Petunia axillaris HOM05D005608 ORTHO05D007543 3.1e-130 468.8 286 78.7
BraA05t19229Z Brassica rapa HOM05D005608 ORTHO05D007543 4.1e-130 468.4 283 78.8
Nitab4.5_0000636g0050 Nicotiana tabacum HOM05D005608 ORTHO05D007543 5.3e-130 468.0 286 76.9
HPP92_001434 Vanilla planifolia HOM05D005608 ORTHO05D007543 5.3e-130 468.0 283 77.4
A05p02350 Brassica napus HOM05D005608 ORTHO05D007543 6.9e-130 467.6 283 78.4
C04p02790 Brassica napus HOM05D005608 ORTHO05D007543 1.2e-129 466.8 283 78.4
BolC4t21919H Brassica oleracea HOM05D005608 ORTHO05D007543 1.2e-129 466.8 283 78.4
ClCG04G003700 Citrullus lanatus HOM05D005608 ORTHO05D007543 1.7e-128 463.0 287 75.3
Sed0008486 Sechium edule HOM05D005608 ORTHO05D007543 2.9e-128 462.2 287 73.2
Lsat_1_v5_gn_8_82180 Lactuca sativa HOM05D005608 ORTHO05D007543 8.5e-128 460.7 335 67.2
ATR0721G011 Amborella trichopoda HOM05D005608 ORTHO05D007543 7.2e-127 457.6 278 77.0
SEGI_13354 Sequoiadendron giganteum HOM05D005608 ORTHO05D007543 5.1e-125 451.4 281 75.1
Os01g0939700 Oryza sativa ssp. japonica HOM05D005608 ORTHO05D007543 1.0e-120 437.2 280 72.1
Cpa.g.sc182.15 Carica papaya HOM05D005608 ORTHO05D007543 1.4e-119 433.3 247 81.4
Sed0024564 Sechium edule HOM05D005608 ORTHO05D007543 9.4e-119 430.6 287 69.0
Eucgr.K01713 Eucalyptus grandis HOM05D005608 ORTHO05D007543 1.2e-118 430.3 277 74.7
AUR62024510 Chenopodium quinoa HOM05D005608 ORTHO05D007543 8.8e-117 424.1 238 82.8
MD12G1082500 Malus domestica HOM05D005608 ORTHO05D007543 5.0e-112 408.3 227 86.3
MBI19_g29889_MAGBIO Magnolia biondii HOM05D005608 ORTHO05D007543 9.4e-111 404.1 236 77.5
unitig_21.g20519 Utricularia gibba HOM05D005608 ORTHO05D007543 1.2e-110 403.7 297 67.3
Pp3c11_8660 Physcomitrium patens HOM05D005608 ORTHO05D007543 2.1e-110 402.9 284 66.2
Mapoly0020s0136 Marchantia polymorpha HOM05D005608 ORTHO05D007543 3.1e-106 389.0 282 66.3
SMO174G0027 Selaginella moellendorffii HOM05D005608 ORTHO05D007543 3.6e-102 375.6 281 64.8
CBR_g12387 Chara braunii HOM05D005608 ORTHO05D007543 5.7e-100 368.2 281 63.0
Dinv39657 Davidia involucrata HOM05D005608 ORTHO05D007543 8.3e-99 364.4 198 85.9
Zm00001eb363240 Zea mays HOM05D005608 ORTHO05D007543 4.5e-97 358.6 222 76.1
Cre03.g158800 Chlamydomonas reinhardtii HOM05D005608 ORTHO05D007543 9.5e-87 324.3 285 57.5
COL.COLO4_32782 Corchorus olitorius HOM05D005608 ORTHO05D007543 5.2e-85 318.5 275 58.5
SalBow6G3992 Salvia bowleyana HOM05D005608 ORTHO05D007543 3.4e-84 315.8 291 57.0
Haze_27232 Corylus avellana HOM05D005608 ORTHO05D007543 4.0e-77 292.4 311 48.9
Psat6g091560 Pisum sativum HOM05D005608 ORTHO05D007543 9.8e-76 287.7 169 81.1
TPR.G19661 Trifolium pratense HOM05D005608 ORTHO05D007543 1.9e-74 283.5 170 78.8
Haze_26706 Corylus avellana HOM05D005608 ORTHO05D007543 1.5e-63 247.3 280 45.4
MCO09G089 Micromonas commoda HOM05D000219 ORTHO05D000226 1.8e-61 240.4 279 46.2
PRCOL_00003320 Prasinoderma coloniale HOM05D000219 ORTHO05D000226 2.4e-61 240.0 283 47.7
Medtr0931s0010 Medicago truncatula HOM05D005608 ORTHO05D044358 1.5e-60 237.3 232 52.2
Medtr1g052165 Medicago truncatula HOM05D005608 ORTHO05D048895 1.9e-50 203.8 114 79.8
TPR.G23055 Trifolium pratense HOM05D005608 ORTHO05D048895 4.5e-44 182.6 103 80.6
Zm00001eb010250 Zea mays HOM05D005608 ORTHO05D007543 9.0e-21 105.1 76 67.1
Zm00001eb141600 Zea mays HOM05D005608 ORTHO05D007543 6.7e-16 89.0 61 65.6
SEGI_35043 Sequoiadendron giganteum HOM05D005608 ORTHO05D384886 1.1e-13 81.6 73 57.5
Pp3c1_10050 Physcomitrium patens HOM05D005608 ORTHO05D319324 1.7e-11 74.3 56 58.9


User provided reference genes

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