Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN14G1478 Fragaria x ananassa HOM05D006569 ORTHO05D007515 0.0e+00 1983.0 1252 100.0
FAN05G0252 Fragaria x ananassa HOM05D006569 ORTHO05D007515 0.0e+00 1854.0 1250 84.5
FAN02G1154 Fragaria x ananassa HOM05D006569 ORTHO05D007515 0.0e+00 1729.5 1252 91.2
FAN09G2200 Fragaria x ananassa HOM05D006569 ORTHO05D007515 0.0e+00 1601.6 1183 82.5
FvH4_6g48150 Fragaria vesca HOM05D006569 ORTHO05D007515 0.0e+00 1518.8 1086 90.0
RcHm_v2.0_Chr2g0167491 Rosa chinensis HOM05D006569 ORTHO05D007515 0.0e+00 1434.5 1257 76.6
MD09G1053400 Malus domestica HOM05D006569 ORTHO05D007515 0.0e+00 1239.6 1248 64.9
Prupe.3G265200 Prunus persica HOM05D006569 ORTHO05D007515 0.0e+00 1132.9 1254 65.4
CANSAT64G0455 Cannabis sativa HOM05D006569 ORTHO05D007515 9.2e-264 914.4 1252 47.4
Manes.01G092900 Manihot esculenta HOM05D006569 ORTHO05D007515 1.1e-261 907.5 1260 54.4
CiPaw.04G004700 Carya illinoinensis HOM05D006569 ORTHO05D007515 3.3e-261 906.0 1262 58.0
TAR371G0591 Trochodendron aralioides HOM05D006569 ORTHO05D007515 7.3e-261 904.8 1217 54.7
Ciclev10013587m.g Citrus clementina HOM05D006569 ORTHO05D007515 9.2e-256 887.9 1223 53.8
Potri.017G086000 Populus trichocarpa HOM05D006569 ORTHO05D007515 6.0e-247 858.6 1047 47.0
QL02p053824 Quercus lobata HOM05D006569 ORTHO05D007515 3.0e-246 856.3 1256 53.2
Sabra17G0075800 Salix brachista HOM05D006569 ORTHO05D007515 5.6e-245 852.0 1047 46.4
GSVIVG01011442001 Vitis vinifera HOM05D006569 ORTHO05D007515 1.1e-243 847.8 1044 55.4
CSS0028247 Camellia sinensis var. sinensis HOM05D006569 ORTHO05D007515 8.9e-243 844.7 1030 51.1
FAN09G3888 Fragaria x ananassa HOM05D006569 ORTHO05D007515 2.2e-241 840.1 622 83.0
Rhsim10G0036300 Rhododendron simsii HOM05D006569 ORTHO05D007515 1.3e-238 830.9 1049 50.5
TWI60G0939 Tripterygium wilfordii HOM05D006569 ORTHO05D007515 8.6e-238 828.2 1059 46.9
Dinv33774 Davidia involucrata HOM05D006569 ORTHO05D007515 2.4e-235 820.1 1039 51.5
MELO3C023650.2 Cucumis melo HOM05D006569 ORTHO05D007515 4.8e-228 795.8 1202 52.6
CsaV3_7G024320 Cucumis sativus L. HOM05D006569 ORTHO05D007515 2.1e-223 780.4 1201 48.8
Atru.chr8.291 Acer truncatum HOM05D006569 ORTHO05D007515 6.0e-223 778.9 964 49.6
arahy.Tifrunner.gnm1.ann1.80L4ZA Arachis hypogaea HOM05D006569 ORTHO05D007515 3.0e-222 776.5 1000 46.1
Lalb_Chr15g0081471 Lupinus albus HOM05D006569 ORTHO05D007515 3.8e-217 759.6 1024 46.3
Oeu010220.1 Olea europaea HOM05D006569 ORTHO05D007515 2.4e-216 756.9 1211 52.0
Cpa.g.sc14.98 Carica papaya HOM05D006569 ORTHO05D007515 3.3e-213 746.5 1058 46.5
Lj6g0009481 Lotus japonicus HOM05D006569 ORTHO05D007515 3.7e-212 743.0 1246 50.0
Carub.0006s1347 Capsella rubella HOM05D006569 ORTHO05D007515 5.7e-205 719.2 1167 41.6
Haze_14089 Corylus avellana HOM05D006569 ORTHO05D007515 5.8e-202 709.1 1041 47.6
Cfa007985 Carpinus fangiana HOM05D006569 ORTHO05D007515 3.8e-201 706.4 1033 47.4
Medtr3g053000 Medicago truncatula HOM05D006569 ORTHO05D007515 6.5e-201 705.7 1163 45.6
AL6G26150 Arabidopsis lyrata HOM05D006569 ORTHO05D007515 1.2e-199 701.4 1235 40.3
Eucgr.I01955 Eucalyptus grandis HOM05D006569 ORTHO05D007515 2.7e-199 700.3 989 44.6
Sed0017024 Sechium edule HOM05D006569 ORTHO05D007515 1.0e-198 698.4 1237 49.6
AT5G15280 Arabidopsis thaliana HOM05D006569 ORTHO05D007515 5.7e-197 692.6 1232 42.2
ClCG09G010340 Citrullus lanatus HOM05D006569 ORTHO05D007515 4.8e-196 689.5 987 49.4
Hund15592 Selenicereus undatus HOM05D006569 ORTHO05D007515 2.0e-194 684.1 990 45.9
Psat5g175080 Pisum sativum HOM05D006569 ORTHO05D007515 1.0e-193 681.8 1173 47.1
Cc07_g03540 Coffea canephora HOM05D006569 ORTHO05D007515 6.5e-193 679.1 1045 45.4
Migut.K01310 Erythranthe guttata HOM05D006569 ORTHO05D007515 3.2e-192 676.8 1247 37.9
EL10Ac2g03001 Beta vulgaris HOM05D006569 ORTHO05D007515 3.6e-191 673.3 1238 44.7
PGR004G0299 Punica granatum HOM05D006569 ORTHO05D007515 6.1e-191 672.5 998 49.1
SGA_v2.0_scaffold236G43766 Striga asiatica HOM05D006569 ORTHO05D007515 1.4e-190 671.4 1187 42.6
Lju41C9T14 Lonicera japonica HOM05D006569 ORTHO05D007515 6.7e-190 669.1 753 55.0
Sp6g28790 Schrenkiella parvula HOM05D006569 ORTHO05D007515 2.0e-189 667.5 1159 39.9
CARHR198030 Cardamine hirsuta HOM05D006569 ORTHO05D007515 2.0e-186 657.5 1160 42.8
TPR.G33795 Trifolium pratense HOM05D006569 ORTHO05D007515 3.4e-186 656.8 1165 45.9
SalBow6G2371 Salvia bowleyana HOM05D006569 ORTHO05D007515 2.5e-184 650.6 986 43.4
Glyma.18G093100 Glycine max HOM05D006569 ORTHO05D007515 3.6e-183 646.7 1163 44.6
Solyc02g067200.4 Solanum lycopersicum HOM05D006569 ORTHO05D007515 1.8e-182 644.4 853 40.9
DCAR_021661 Daucus carota HOM05D006569 ORTHO05D007515 5.1e-182 642.9 868 48.0
Thhalv10012473m.g Eutrema salsugineum HOM05D006569 ORTHO05D007515 5.1e-182 642.9 1228 37.7
BcaNung03317 Brassica carinata HOM05D006569 ORTHO05D007515 6.7e-182 642.5 1173 39.4
AUR62018101 Chenopodium quinoa HOM05D006569 ORTHO05D007515 4.8e-180 636.3 1242 43.6
Nitab4.5_0000212g0030 Nicotiana tabacum HOM05D006569 ORTHO05D007515 6.3e-180 636.0 842 42.5
VMungo0540G0528 Vigna mungo HOM05D006569 ORTHO05D007515 5.9e-178 629.4 1164 47.5
THA.LOC104822352 Tarenaya hassleriana HOM05D006569 ORTHO05D007515 1.6e-175 621.3 880 40.9
Duzib264G1306 Durio zibethinus HOM05D006569 ORTHO05D007515 5.2e-174 616.3 965 44.4
Lsat_1_v5_gn_2_89461 Lactuca sativa HOM05D006569 ORTHO05D007515 2.0e-173 614.4 1211 42.7
BraA02t05270Z Brassica rapa HOM05D006569 ORTHO05D007515 7.7e-170 602.4 1161 34.7
Ca_14754_v3 Cicer arietinum L. HOM05D006569 ORTHO05D007515 3.8e-169 600.1 1085 44.7
Sc10g0003480 Simmondsia chinensis HOM05D006569 ORTHO05D007515 9.4e-168 595.5 1014 38.0
Nitab4.5_0003653g0010 Nicotiana tabacum HOM05D006569 ORTHO05D007515 5.2e-166 589.7 787 40.4
Sopen02g016380 Solanum pennellii HOM05D006569 ORTHO05D007515 1.3e-164 585.1 790 39.9
PGSC0003DMG400025133 Solanum tuberosum HOM05D006569 ORTHO05D007515 3.7e-164 583.6 789 39.7
Ah.10g031720 Amaranthus hybridus HOM05D006569 ORTHO05D007515 8.3e-164 582.4 971 40.8
Peaxi162Scf00011g00263 Petunia axillaris HOM05D006569 ORTHO05D007515 1.0e-161 575.5 778 39.8
AUR62034434 Chenopodium quinoa HOM05D006569 ORTHO05D007515 4.2e-160 570.1 1041 40.0
Aqoxy3G03442 Aquilegia oxysepala HOM05D006569 ORTHO05D007515 2.3e-158 564.3 732 49.0
ECA238G4289 Erigeron canadensis HOM05D006569 ORTHO05D007515 1.2e-157 562.0 1082 43.5
HanXRQChr07g0199321 Helianthus annuus HOM05D006569 ORTHO05D007515 1.2e-157 562.0 1386 35.3
Aa31LG11G14260 Aethionema arabicum HOM05D006569 ORTHO05D007515 1.7e-156 558.1 1159 36.6
CAN.G1103.13 Capsicum annuum HOM05D006569 ORTHO05D007515 1.8e-155 554.7 718 44.6
BolC2t06696H Brassica oleracea HOM05D006569 ORTHO05D007515 7.0e-155 552.7 1162 33.9
FvH4_6g47953 Fragaria vesca HOM05D006569 ORTHO05D007515 7.0e-155 552.7 353 96.3
C02p07640 Brassica napus HOM05D006569 ORTHO05D007515 1.6e-154 551.6 1162 33.9
BcaC03g13417 Brassica carinata HOM05D006569 ORTHO05D007515 3.5e-154 550.4 1162 33.9
MSTRG.15471 Avicennia marina HOM05D006569 ORTHO05D007515 4.5e-154 550.1 1039 40.1
FAN09G1632 Fragaria x ananassa HOM05D006569 ORTHO05D007515 1.8e-150 538.1 294 93.2
FAN05G1756 Fragaria x ananassa HOM05D006569 ORTHO05D007515 3.0e-145 520.8 351 93.2
PSO832G0544 Papaver somniferum HOM05D006569 ORTHO05D007515 7.8e-130 469.5 718 45.4
MBI05_g41591_MAGBIO Magnolia biondii HOM05D006569 ORTHO05D007515 2.1e-127 461.5 1006 37.3
PSO013G0141 Papaver somniferum HOM05D006569 ORTHO05D007515 6.8e-126 456.4 770 43.2
CDE04G0154 Ceratophyllum demersum HOM05D006569 ORTHO05D007515 9.6e-120 436.0 637 36.7
Zm00001eb005280 Zea mays HOM05D006569 ORTHO05D007515 1.2e-119 435.6 1196 29.8
RcHm_v2.0_Chr2g0167581 Rosa chinensis HOM05D006569 ORTHO05D007515 5.1e-113 413.7 226 89.4
COL.COLO4_10330 Corchorus olitorius HOM05D006569 ORTHO05D007515 6.6e-113 413.3 792 33.6
HPP92_012798 Vanilla planifolia HOM05D006569 ORTHO05D007515 2.5e-104 384.8 898 29.6
ATR1145G048 Amborella trichopoda HOM05D006569 ORTHO05D007515 1.6e-103 382.1 1171 43.5
A02p02990 Brassica napus HOM05D006569 ORTHO05D007515 7.1e-99 366.7 813 35.7
Phvul.006G046500 Phaseolus vulgaris HOM05D006569 ORTHO05D007515 7.1e-99 366.7 775 42.1
MBI05_g10764_MAGBIO Magnolia biondii HOM05D006569 ORTHO05D007515 2.1e-98 365.2 754 31.3
RcHm_v2.0_Chr2g0167571 Rosa chinensis HOM05D006569 ORTHO05D007515 1.8e-97 362.1 196 91.3
FAN14G0320 Fragaria x ananassa HOM05D006569 ORTHO05D007515 1.7e-92 345.5 197 91.4
FvH4_6g47954 Fragaria vesca HOM05D006569 ORTHO05D007515 3.2e-91 341.3 197 89.8
FvH4_6g48880 Fragaria vesca HOM05D006569 ORTHO05D007515 3.5e-90 337.8 180 95.0
QL93p0100_0341 Quercus lobata HOM05D006569 ORTHO05D007515 9.7e-72 276.6 610 32.6
QL02p057930 Quercus lobata HOM05D006569 ORTHO05D007515 1.5e-69 269.2 561 33.5
QL08p010038 Quercus lobata HOM05D006569 ORTHO05D007515 2.2e-68 265.4 948 31.2
FAN09G4849 Fragaria x ananassa HOM05D006569 ORTHO05D007515 9.7e-56 223.4 131 90.8
Thecc.04G085700 Theobroma cacao HOM05D006569 ORTHO05D007515 2.0e-53 215.7 209 50.7
FAN05G1232 Fragaria x ananassa HOM05D006569 ORTHO05D007515 6.3e-47 194.1 244 50.4
Glyma.18G108202 Glycine max HOM05D006569 ORTHO05D007515 2.9e-44 185.3 330 50.9
HPP92_012677 Vanilla planifolia HOM05D006569 ORTHO05D007515 3.3e-35 155.2 669 38.4
Thecc.04G085800 Theobroma cacao HOM05D006569 ORTHO05D007515 3.6e-34 151.8 331 30.8
HanXRQChr05g0134551 Helianthus annuus HOM05D006569 ORTHO05D007515 6.6e-28 131.0 305 63.6
MBI05_g36424_MAGBIO Magnolia biondii HOM05D006569 ORTHO05D007515 1.9e-27 129.4 235 34.9
Medtr3g052970 Medicago truncatula HOM05D006569 ORTHO05D007515 4.1e-22 111.7 88 55.7
ATR0974G001 Amborella trichopoda HOM05D006569 ORTHO05D007515 1.6e-21 109.8 220 32.3
SEGI_17455 Sequoiadendron giganteum HOM05D006569 ORTHO05D007515 6.8e-17 94.4 556 33.8
MBI05_g36420_MAGBIO Magnolia biondii HOM05D006569 ORTHO05D007515 3.4e-16 92.0 82 58.5
Os03g0168400 Oryza sativa ssp. japonica HOM05D006569 ORTHO05D007515 1.9e-14 86.3 124 34.7
Glyma.08G319450 Glycine max HOM05D006569 ORTHO05D007515 1.0e-12 80.5 78 47.4
CsaV3_6G032540 Cucumis sativus L. HOM05D005622 ORTHO05D002854 2.1e-10 72.8 244 25.8
SEGI_26115 Sequoiadendron giganteum HOM05D006819 ORTHO05D008763 2.1e-10 72.8 191 29.8
QL03p000909 Quercus lobata HOM05D005622 ORTHO05D002854 6.2e-10 71.2 274 24.1
QL03p001266 Quercus lobata HOM05D005622 ORTHO05D002854 6.2e-10 71.2 274 24.5
THA.LOC104808568 Tarenaya hassleriana HOM05D005622 ORTHO05D002854 4.0e-09 68.6 207 27.1
Migut.E00052 Erythranthe guttata HOM05D005622 ORTHO05D002854 1.5e-08 66.6 263 24.0
Oeu004580.1 Olea europaea HOM05D005622 ORTHO05D002854 3.4e-08 65.5 332 22.9
Haze_16531 Corylus avellana HOM05D006819 ORTHO05D008763 7.6e-08 64.3 170 26.5
CARHR275790 Cardamine hirsuta HOM05D005764 ORTHO05D006600 1.3e-07 63.5 238 26.9
Cfa001984 Carpinus fangiana HOM05D006819 ORTHO05D008763 1.3e-07 63.5 170 26.5
Lj1P893G46 Lonicera japonica HOM05D003039 ORTHO05D008410 1.3e-07 63.5 338 21.3
Lj4g0007925 Lotus japonicus HOM05D002460 ORTHO05D002716 1.3e-07 63.5 254 24.0
Phvul.003G043300 Phaseolus vulgaris HOM05D005622 ORTHO05D002854 1.3e-07 63.5 286 24.1
CSS0009290 Camellia sinensis var. sinensis HOM05D005622 ORTHO05D002854 1.7e-07 63.2 274 22.6
DCAR_027464 Daucus carota HOM05D005622 ORTHO05D002854 1.7e-07 63.2 225 24.9
Aa31LG7G8600 Aethionema arabicum HOM05D005622 ORTHO05D002854 2.2e-07 62.8 286 23.1
Cc11_g12130 Coffea canephora HOM05D005622 ORTHO05D002854 2.2e-07 62.8 308 22.4
Nitab4.5_0007438g0010 Nicotiana tabacum HOM05D005622 ORTHO05D002854 2.2e-07 62.8 270 21.9
Rhsim12G0135600 Rhododendron simsii HOM05D005622 ORTHO05D002854 2.9e-07 62.4 249 22.9
HanXRQChr16g0524351 Helianthus annuus HOM05D006569 ORTHO05D007515 3.8e-07 62.0 80 33.8
Potri.016G086100 Populus trichocarpa HOM05D005622 ORTHO05D002854 3.8e-07 62.0 249 24.1
RcHm_v2.0_Chr4g0438541 Rosa chinensis HOM05D005622 ORTHO05D002854 3.8e-07 62.0 270 23.0
ATR0721G158 Amborella trichopoda HOM05D003900 ORTHO05D005009 8.4e-07 60.8 185 23.2
MSTRG.13447 Avicennia marina HOM05D005622 ORTHO05D002854 8.4e-07 60.8 261 21.5
ClCG08G010340 Citrullus lanatus HOM05D005622 ORTHO05D002854 1.1e-06 60.5 222 22.5
MELO3C011426.2 Cucumis melo HOM05D005622 ORTHO05D002854 1.1e-06 60.5 137 27.0
MBI05_g36422_MAGBIO Magnolia biondii HOM05D006569 ORTHO05D007515 1.1e-06 60.5 62 48.4
Lsat_1_v5_gn_1_46480 Lactuca sativa HOM05D001126 ORTHO05D000991 1.4e-06 60.1 82 41.5
MBI16_g36318_MAGBIO Magnolia biondii HOM05D002460 ORTHO05D002716 1.4e-06 60.1 163 29.4
Nitab4.5_0000014g0340 Nicotiana tabacum HOM05D005622 ORTHO05D002854 1.4e-06 60.1 270 22.2
Psat4g060760 Pisum sativum HOM05D002460 ORTHO05D002716 1.4e-06 60.1 175 26.9
Ca_04951_v3 Cicer arietinum L. HOM05D005622 ORTHO05D002854 1.9e-06 59.7 261 21.5
FAN18G1084 Fragaria x ananassa HOM05D002453 ORTHO05D008746 1.9e-06 59.7 140 31.4
TWI18G0691 Tripterygium wilfordii HOM05D006819 ORTHO05D008763 1.9e-06 59.7 170 27.1
HPP92_025826 Vanilla planifolia HOM05D006999 ORTHO05D008936 1.9e-06 59.7 201 25.4
Aa31LG11G1530 Aethionema arabicum HOM05D005764 ORTHO05D006600 2.4e-06 59.3 261 25.3
CiPaw.02G155800 Carya illinoinensis HOM05D006819 ORTHO05D008763 2.4e-06 59.3 176 26.7
Zm00001eb227290 Zea mays HOM05D000891 ORTHO05D000761 2.4e-06 59.3 252 21.8
Aa31LG9G1210 Aethionema arabicum HOM05D007358 ORTHO05D009117 3.2e-06 58.9 118 30.5
AUR62000117 Chenopodium quinoa HOM05D001669 ORTHO05D002854 3.2e-06 58.9 286 21.0
Psat2g129840 Pisum sativum HOM05D005622 ORTHO05D002854 3.2e-06 58.9 249 21.7
Sabra16G0092400 Salix brachista HOM05D005622 ORTHO05D002854 3.2e-06 58.9 249 23.3
Aqoxy3G03617 Aquilegia oxysepala HOM05D005622 ORTHO05D002854 4.1e-06 58.5 311 22.5
Medtr5g044120 Medicago truncatula HOM05D005622 ORTHO05D002854 5.4e-06 58.2 249 21.3
QL05p028543 Quercus lobata HOM05D006819 ORTHO05D008763 5.4e-06 58.2 178 27.5
Thecc.02G332900 Theobroma cacao HOM05D005622 ORTHO05D002854 5.4e-06 58.2 261 22.6
MSTRG.4712 Avicennia marina HOM05D000891 ORTHO05D000761 9.2e-06 57.4 226 22.1
Lalb_Chr02g0149121 Lupinus albus HOM05D007536 ORTHO05D009390 9.2e-06 57.4 96 34.4
Psat4g140040 Pisum sativum HOM05D002453 ORTHO05D008746 9.2e-06 57.4 117 24.8
Sp1g22250 Schrenkiella parvula HOM05D005622 ORTHO05D002854 9.2e-06 57.4 211 24.6


User provided reference genes

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